Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016535

Physical Location & Seq

Genomic Coordinates Reverse (-)

26411524 .. 26413375

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTGCAGTTAATGTTGCAAACAGAAAATTTTCAGTACACTTGGTTTGAAGACTTCGTGTATAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTCGGAGCAATGTTGGTGTATGACATGACCAAGCGTCAATCTTTTGACCACATGGCTAGGTGGTTGGAGGAATTAAGGGGGCATGCTGATAAGAACATTGTTATAATGCTCATTGGCAACAAATGTGACTTGGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCTCAGGAGTTCGCTCAAAGAGAGAACCTATTCTTTATGGAGACATCTGCTCTTCAGGCTACCAATGTTGAAACAGCATTTTTAATGATTTTAAGGGAGATATACCGAATAATGAGCAAGAAGACCCTCGCTGCTAATGAGGCAGATGGTGGGGATTCAGGGCTCCTTAAGGGGACTGCAATTACTGTTCCTAGTCCAGAACCGGCTGGTGCCCAGAAGGGTGGCTGCTGCTTTGCCTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0019899 GO:0019900 GO:0022414 GO:0022603 GO:0022604 GO:0030133 GO:0030154 GO:0030427 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0040008 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0070382 GO:0071840 GO:0080092 GO:0090404 GO:0090406 GO:0097708 GO:0099503 GO:0120025 GO:0120038 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

167

Amino Acids

18.66

Weight (kDa)

5.21

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	21 - 121	4.2e-33	Ras family
Roc	PF08477	21 - 75	5.1e-09	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016535)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12160
fragaria_vesca	FvH4_6g22850
malus_domestica	MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica	Prupe.7G071600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480591
rosa_laevigata	RLG00000023465
rosa_multiflora	Rmu_sc0002205.1_g000059
rosa_roxburghii	Rroxscaffold_6G00401260
rosa_rugosa	Rorug03G0184300
rosa_samantha	Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana	Rw3G021180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	273, 296
AfaI	GTAC	1 cut(s)	38
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	50, 329
AhdI	GACNNNNNGTC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	4, 389, 483, 486
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	2 cut(s)	30, 287
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	3 cut(s)	57, 227, 386
BbvI	GCAGC	3 cut(s)	376, 470, 473
BccI	CCATC	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	153, 450
BfmI	CTRYAG	1 cut(s)	5
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	4 cut(s)	5, 390, 484, 487
BlsI	GCNGC	4 cut(s)	6, 391, 485, 488
BmeRI	GACNNNNNGTC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	422, 469
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	3 cut(s)	57, 227, 386
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	376, 470, 473
BsgI	GTGCAG	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	423, 472
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	422, 469
BspMAI	CTGCAG	1 cut(s)	9
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	467
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 314, 398
BstNSI	RCATGY	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	376, 470, 473
BstV2I	GAAGAC	3 cut(s)	57, 227, 386
BstXI	CCANNNNNNTGG	1 cut(s)	479
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	460
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	3 cut(s)	121, 148, 179
CviJI	RGCY	5 cut(s)	152, 317, 421, 464, 483
CviKI_1	RGCY	5 cut(s)	152, 317, 421, 464, 483
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	273, 296
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	3 cut(s)	124, 151, 182
FaiI	YATR	9 cut(s)	63, 82, 117, 122, 149, 180, 200, 296, 361
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	3 cut(s)	120, 147, 178
Fnu4HI	GCNGC	4 cut(s)	5, 390, 484, 487
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	5, 390, 484, 487
FspBI	CTAG	2 cut(s)	153, 450
GluI	GCNGC	4 cut(s)	5, 390, 484, 487
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	124, 151, 182
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	3 cut(s)	73, 263, 455
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	5 cut(s)	7, 19, 80, 95, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 314, 398
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	124, 151, 182
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	101, 426
LpnPI	CCDG	7 cut(s)	248, 299, 402, 450, 468, 474, 485
Lsp1109I	GCAGC	3 cut(s)	376, 470, 473
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	153, 450
MaeIII	GTNAC	2 cut(s)	70, 221
MboII	GAAGA	6 cut(s)	62, 227, 266, 302, 391, 489
MhlI	GDGCHC	2 cut(s)	423, 472
MluCI	AATT	3 cut(s)	28, 167, 438
MmeI	TCCRAC	2 cut(s)	79, 141
MnlI	CCTC	4 cut(s)	83, 157, 391, 395
MroXI	GAANNNNTTC	2 cut(s)	30, 287
MseI	TTAA	5 cut(s)	11, 170, 341, 350, 426
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	101, 314, 398
NlaIII	CATG	3 cut(s)	124, 151, 182
NlaIV	GGNNCC	2 cut(s)	422, 469
NmuCI	GTSAC	2 cut(s)	70, 221
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	2 cut(s)	30, 287
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	6, 391, 485, 488
PsiI	TTATAA	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	422, 469
PstI	CTGCAG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	5 cut(s)	11, 170, 341, 350, 426
SatI	GCNGC	4 cut(s)	5, 390, 484, 487
SduI	GDGCHC	2 cut(s)	423, 472
SetI	ASST	3 cut(s)	94, 158, 288
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	28, 167, 438
SspMI	CTAG	2 cut(s)	153, 450
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	28, 167, 438
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	5 cut(s)	11, 170, 341, 350, 426
Tru9I	TTAA	5 cut(s)	11, 170, 341, 350, 426
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	70, 221
TseI	GCWGC	4 cut(s)	4, 389, 483, 486
Tsp45I	GTSAC	2 cut(s)	70, 221
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	30, 287
XspI	CTAG	2 cut(s)	153, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.