FvH4_6g22850

Ras-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
16535322 .. 16537714
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22850.t1

Sequence Viewer

Length: 672 bp
ATGTCAAATCATGTTGCTGATTATAGTCAAAAGATTGATTATGTTTTCAAAGTGGTTTTGATTGGTGACTCGGCGGTTGGAAAAACACAACTCCTGGCACGATTTGCTAGAAATGAGTTCAGTTTAGAATCTAAAGCCACAATCGGAGTCGAATTTCAGACGAAAACGCTTGTTCTTGATCAAAAGACTGTTAAGGCGCAAATTTGGGATACTGCTGGCCAAGAAAGATACAGAGCAGTCACGAGTGCATACTACCGAGGTGCAGTTGGAGCAATGTTGGTTTATGACATGACCAAGCGTCAATCATTTGATCACATGGCTAGGTGGTTGGAGGAACTAAGAGGGTATGCTGATAAAAACATTGTTATAATGCTCATTGGCAACAAATGTGATTTAGGAAGTCTTCGAGCAGTGCCAACTGAAGATGCTCAGGAGTTTGCTCAAAGAGAGAATCTATTTTTTATGGAGACATCTGCTCTTGAGTCCACCAACGTTGAAACAGCATTTCTAATGATTTTGATGGAGATATATCAATTAATGAGGAAGAAGACCCTCGCCTCTAATGAAGGAGATGCTGGTGATTCAAGTTTTCTAAAAGGGACGACAATTATTCTTCCTACTCCAGAACCGCCTAGTGCCCAGAAGGGTAGCTGTTGTTTCTCCTCTTCTTAA

Protein Analysis

224

Amino Acids

24.92

Weight (kDa)

5.8

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 150 2.6e-13 ADP-ribosylation factor family
Ras PF00071 17 - 177 1.7e-62 Ras family
Roc PF08477 17 - 131 2.2e-35 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12160
fragaria_vesca FvH4_6g22850
malus_domestica MD12G1062500.v1.1 MD14G1063200.v1.1
prunus_persica Prupe.7G071600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0480591
rosa_laevigata RLG00000023465
rosa_multiflora Rmu_sc0002205.1_g000059
rosa_roxburghii Rroxscaffold_6G00401260
rosa_rugosa Rorug03G0184300
rosa_samantha Rh3AG236400 Rh3CG265900 Rh3DG261700
rosa_wichuraiana Rw3G021180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AciI CCGC 2 cut(s) 74, 629
AclI AACGTT 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 2 cut(s) 152, 201
AcuI CTGAAG 1 cut(s) 441
AgsI TTSAA 3 cut(s) 49, 497, 585
AhdI GACNNNNNGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 1 cut(s) 651
AluI AGCT 1 cut(s) 651
Alw26I GTCTC 1 cut(s) 461
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 152, 201
AseI ATTAAT 1 cut(s) 536
AspLEI GCGC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 77, 590
BaeGI GKGCMC 1 cut(s) 640
BalI TGGCCA 1 cut(s) 219
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 395, 554
BccI CCATC 1 cut(s) 514
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 202
BclI TGATCA 2 cut(s) 178, 310
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 3 cut(s) 108, 321, 633
BfuI GTATCC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 95
BmeRI GACNNNNNGTC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 415, 562
BpiI GAAGAC 2 cut(s) 395, 554
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 652
BseSI GKGCMC 1 cut(s) 640
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 613
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 178, 310
BspACI CCGC 2 cut(s) 74, 629
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 178, 310
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 338, 429
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 181, 313
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 178, 310
BstMWI GCNNNNNNNGC 2 cut(s) 104, 269
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 640
BstV2I GAAGAC 2 cut(s) 395, 554
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 199
CseI GACGC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 3 cut(s) 11, 289, 316
CviJI RGCY 4 cut(s) 137, 219, 320, 651
CviKI_1 RGCY 4 cut(s) 137, 219, 320, 651
DdeI CTNAG 2 cut(s) 338, 429
DpnI GATC 2 cut(s) 180, 312
DpnII GATC 2 cut(s) 178, 310
DriI GACNNNNNGTC 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 217
Eam1105I GACNNNNNGTC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 14, 292, 319
FaqI GGGAC 1 cut(s) 613
FatI CATG 3 cut(s) 10, 288, 315
FbaI TGATCA 2 cut(s) 178, 310
FspBI CTAG 3 cut(s) 108, 321, 633
GlaI GCGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 1 cut(s) 219
HgaI GACGC 1 cut(s) 287
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 14, 292, 319
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 6 cut(s) 68, 128, 147, 451, 482, 581
HphI GGTGA 2 cut(s) 77, 590
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 2 cut(s) 146, 159
Hpy188III TCNNGA 5 cut(s) 176, 241, 431, 479, 623
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 2 cut(s) 560, 637
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 2 cut(s) 248, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 269
HpyF3I CTNAG 2 cut(s) 338, 429
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 3 cut(s) 14, 292, 319
HspAI GCGC 1 cut(s) 197
Ksp22I TGATCA 2 cut(s) 178, 310
Kzo9I GATC 2 cut(s) 178, 310
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 80, 107, 201, 416, 561, 636, 653
LweI GCATC 2 cut(s) 415, 562
MaeI CTAG 3 cut(s) 108, 321, 633
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 65, 238
MalI GATC 2 cut(s) 180, 312
MboI GATC 2 cut(s) 178, 310
MboII GAAGA 6 cut(s) 395, 434, 556, 559, 605, 657
MhlI GDGCHC 1 cut(s) 640
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 4 cut(s) 152, 201, 533, 606
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 3 cut(s) 62, 156, 491
MmeI TCCRAC 3 cut(s) 58, 247, 309
MnlI CCTC 6 cut(s) 251, 325, 335, 534, 563, 568
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
MseI TTAA 3 cut(s) 192, 536, 670
Msp20I TGGCCA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 104, 269
NdeII GATC 2 cut(s) 178, 310
NlaIII CATG 3 cut(s) 14, 292, 319
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 65, 238
PfeI GAWTC 3 cut(s) 128, 451, 581
PleI GAGTC 3 cut(s) 62, 155, 490
PpsI GAGTC 3 cut(s) 62, 155, 490
PshBI ATTAAT 1 cut(s) 536
PsiI TTATAA 1 cut(s) 368
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
SaqAI TTAA 3 cut(s) 192, 536, 670
Sau3AI GATC 2 cut(s) 178, 310
SchI GAGTC 3 cut(s) 62, 156, 491
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 640
SetI ASST 4 cut(s) 262, 326, 495, 653
SfaNI GCATC 2 cut(s) 415, 562
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 152, 201, 533, 606
SsiI CCGC 2 cut(s) 74, 629
SspMI CTAG 3 cut(s) 108, 321, 633
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 150, 406
TasI AATT 4 cut(s) 152, 201, 533, 606
TfiI GAWTC 3 cut(s) 128, 451, 581
Tru1I TTAA 3 cut(s) 192, 536, 670
Tru9I TTAA 3 cut(s) 192, 536, 670
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 65, 238
Tsp45I GTSAC 2 cut(s) 65, 238
TspDTI ATGAA 1 cut(s) 579
TspRI CASTG 1 cut(s) 417
VspI ATTAAT 1 cut(s) 536
XapI RAATTY 2 cut(s) 152, 201
XspI CTAG 3 cut(s) 108, 321, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.