AT3G13140

cellular transition metal ion homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014977
Physical Location & Seq
Reverse (-)
4226654 .. 4227528
875 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13140.1

Sequence Viewer

Length: 552 bp
ATGGATTACACTGTCGATATGAGCTGTGTGATGAAAGTGAACAGAGGTTGCCAGCTTTGTCGGCAAAAAGTGTCAGAAGTCATGCATTGTGTCTACGGAGTTTACTCTGTGGATTTCACCGGAGACGACAACTCAATGAAACTCAAGGCCAGAGTTAACCCTAATGTATTGTTGGCTGTTGCTGAACGGTACGGTGAACATGGAAAGATCACTAATCTCCGTTTCGACGGAGAAGTTATGACTCCTCGCGGCGGCGGTGGTTATTACGGTCAATCAGGCTATTACATTCCTACCACCTCCCGTGGTAACTATGCATATCCTTCGTTGTATCAATATCCTCCTCCGCCACATGTTTATGGCGGAAACTATGCTCATCCGCCGTCAAATCCCCCGCGGCACTCGGAGGCACCACGGCAGGCAACTAACCCGCATACAACACCGCCGTATTATAGTCTACCGGCGCCACCACCAAGAACGTTGCATAGTTACTCTTACGTAGAACCGCAGTATCGGATGTCGAGTTCGTCGGGTAGTGGATGCGTGATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

183

Amino Acids

20.36

Weight (kDa)

8.74

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13140
fragaria_vesca FvH4_3g29421
malus_domestica MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis pycom11g17370
rosa_chinensis RchiOBHm_Chr5g0053851
rosa_multiflora Rmu_sc0001759.1_g000008
rosa_roxburghii Rroxscaffold_1G00026750
rosa_samantha Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 406, 460
AccI GTMKAC 2 cut(s) 93, 454
AccII CGCG 2 cut(s) 249, 394
AclI AACGTT 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 505, 537
AluBI AGCT 2 cut(s) 24, 55
AluI AGCT 2 cut(s) 24, 55
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 463
AsuHPI GGTGA 2 cut(s) 109, 206
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BanI GGYRCC 2 cut(s) 406, 460
BceAI ACGGC 3 cut(s) 364, 427, 428
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BclI TGATCA 1 cut(s) 543
BcoDI GTCTC 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 3 cut(s) 250, 253, 395
BlsI GCNGC 3 cut(s) 251, 254, 396
BmiI GGNNCC 2 cut(s) 408, 462
BmsI GCATC 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 496
BsaHI GRCGYC 1 cut(s) 461
BsaJI CCNNGG 3 cut(s) 301, 392, 410
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 457
BseDI CCNNGG 3 cut(s) 301, 392, 410
BseGI GGATG 3 cut(s) 373, 519, 542
BseLI CCNNNNNNNGG 1 cut(s) 251
BseRI GAGGAG 2 cut(s) 234, 330
Bsh1236I CGCG 2 cut(s) 249, 394
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 2 cut(s) 406, 460
BsiSI CCGG 2 cut(s) 120, 458
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 207, 543
BspANI GGCC 1 cut(s) 149
BspFNI CGCG 2 cut(s) 249, 394
BspLI GGNNCC 2 cut(s) 408, 462
BspT107I GGYRCC 2 cut(s) 406, 460
BsrFI RCCGGY 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 301, 392, 410
BssMI GATC 2 cut(s) 207, 543
BssNI GRCGYC 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 13, 189, 194, 269
BstACI GRCGYC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 53, 417
BstDSI CCRYGG 3 cut(s) 301, 392, 410
BstF5I GGATG 3 cut(s) 373, 519, 542
BstFNI CGCG 2 cut(s) 249, 394
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 210, 546
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 207, 543
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 353
BstSNI TACGTA 1 cut(s) 496
BstUI CGCG 2 cut(s) 249, 394
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 3 cut(s) 301, 392, 410
BtsCI GGATG 3 cut(s) 373, 519, 542
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 53, 417
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 457
Cfr42I CCGCGG 1 cut(s) 395
Csp6I GTAC 1 cut(s) 190
CviAII CATG 4 cut(s) 82, 200, 350, 547
CviJI RGCY 5 cut(s) 24, 55, 149, 176, 279
CviKI_1 RGCY 5 cut(s) 24, 55, 149, 176, 279
CviQI GTAC 1 cut(s) 190
DinI GGCGCC 1 cut(s) 462
DpnI GATC 2 cut(s) 209, 545
DpnII GATC 2 cut(s) 207, 543
EciI GGCGGA 3 cut(s) 333, 366, 375
Eco105I TACGTA 1 cut(s) 496
EcoT22I ATGCAT 2 cut(s) 87, 316
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 4 cut(s) 85, 203, 353, 550
FatI CATG 4 cut(s) 81, 199, 349, 546
FauI CCCGC 2 cut(s) 399, 435
FbaI TGATCA 1 cut(s) 543
FblI GTMKAC 2 cut(s) 93, 454
Fnu4HI GCNGC 3 cut(s) 250, 253, 395
FokI GGATG 2 cut(s) 360, 526
Fsp4HI GCNGC 3 cut(s) 250, 253, 395
GlaI GCGC 1 cut(s) 462
GluI GCNGC 3 cut(s) 250, 253, 395
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 1 cut(s) 149
HapII CCGG 2 cut(s) 120, 458
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 4 cut(s) 85, 203, 353, 550
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 120, 458
HphI GGTGA 2 cut(s) 109, 206
Hpy166II GTNNAC 6 cut(s) 40, 94, 103, 157, 197, 455
Hpy188I TCNGA 3 cut(s) 76, 403, 513
Hpy8I GTNNAC 6 cut(s) 40, 94, 103, 157, 197, 455
Hpy99I CGWCG 2 cut(s) 230, 529
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 4 cut(s) 13, 189, 194, 269
HpyCH4IV ACGT 2 cut(s) 476, 495
HpyCH4V TGCA 3 cut(s) 85, 314, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpySE526I ACGT 2 cut(s) 476, 495
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 4 cut(s) 85, 203, 353, 550
HspAI GCGC 1 cut(s) 461
KasI GGCGCC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 543
KspAI GTTAAC 1 cut(s) 157
KspI CCGCGG 1 cut(s) 395
Kzo9I GATC 2 cut(s) 207, 543
LpnPI CCDG 6 cut(s) 65, 133, 163, 261, 401, 471
LweI GCATC 1 cut(s) 527
MaeII ACGT 2 cut(s) 476, 495
MaeIII GTNAC 2 cut(s) 305, 485
MalI GATC 2 cut(s) 209, 545
MboI GATC 2 cut(s) 207, 543
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 6 cut(s) 38, 255, 307, 348, 351, 397
Mph1103I ATGCAT 2 cut(s) 87, 316
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 2 cut(s) 120, 458
MvnI CGCG 2 cut(s) 249, 394
MwoI GCNNNNNNNGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 461
NdeII GATC 2 cut(s) 207, 543
NlaIII CATG 4 cut(s) 85, 203, 353, 550
NlaIV GGNNCC 2 cut(s) 408, 462
NsiI ATGCAT 2 cut(s) 87, 316
NspI RCATGY 1 cut(s) 353
PciI ACATGT 1 cut(s) 349
PkrI GCNGC 3 cut(s) 251, 254, 396
PleI GAGTC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 235
Ppu21I YACGTR 1 cut(s) 496
PscI ACATGT 1 cut(s) 349
Psp1406I AACGTT 1 cut(s) 476
PspN4I GGNNCC 2 cut(s) 408, 462
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 354
SacII CCGCGG 1 cut(s) 395
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 250, 253, 395
Sau3AI GATC 2 cut(s) 207, 543
SchI GAGTC 1 cut(s) 235
SetI ASST 6 cut(s) 26, 49, 57, 299, 479, 498
SfaNI GCATC 1 cut(s) 527
SfoI GGCGCC 1 cut(s) 462
Sfr303I CCGCGG 1 cut(s) 395
SgrBI CCGCGG 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 496
SspDI GGCGCC 1 cut(s) 460
TaaI ACNGT 4 cut(s) 13, 189, 194, 269
TaiI ACGT 2 cut(s) 479, 498
TaqI TCGA 3 cut(s) 15, 225, 518
TauI GCSGC 3 cut(s) 252, 255, 397
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 47, 152
TspGWI ACGGA 3 cut(s) 111, 209, 243
TspRI CASTG 1 cut(s) 16
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 2 cut(s) 93, 454
Zsp2I ATGCAT 2 cut(s) 87, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.