MD11G1201200.v1.1

Meiotic recombination protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
29154935 .. 29158535
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1201200.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGAGGGAAAGCACTGGAGATGGAGCTCACAGCCGCGGCCGCGCGATCTGCTAAGAAAAGTCAGAGAATTTACTCGAGCTATGGTTGAAGATCTTAGCAATGAACGGTCTCCGGAGATTATCATCGATCGCTTCAGAAATTACTGCACGAATCCCGATTCAAATTGCTATTGTAGCTTCGATTCACCAAAATGGCGGGAGATTCTCACGCTTCGAAGGGCAAGCCATGTGCGTAGATTAGATGTTTTGCTCAAGGTTCTATTGATTGTTCAGCAACTTCTGCAAGAAAACAGACACGGGTCTAAGAGGGATATCTATTACATGCATCCTTCTATATTTTCAGATCAGTCAGTTGTAGACCGTGCAATCAATGATATATGTATCCTTCTGCAGTGTAGTCGCCACAATTTGAATGTGGTGTCTGTAGGAAAGGGGTTGGTAATGGGCTGGTTAAGGTTTTCAGAAGCTGGAAACGTATTTGATTGCATAAACAGGCCAAACACAGCCTTCTCTGTCCCTATTCATGTTGAAGAGGTCAAAGATATTGTCAGTGTAGCTCGGTGCATACTTGTTGTGGAGAAAGAATCAGTTTTTCAACGATTGGCAGATGACCAGTTTTGCAACAAAAACCATTGCATCGTTATCACTGGACGTGGCTATCCTGATATTCCCACAAGAAGGTTTTTGGGGCTCCTTGTTGATACTTTGCATCTCCCTATCTATTGCTTGGTAGATTGTGATCCATACGGTTTTGACATCCTCTCCATATATCGGTTTGGTTCTATGCAAATGGCCTATGATGCAAAATTTCTACGCGTCCCCGAGGTACTCTGGCTTGGAGCCTTCCCTTCGGACTCAGAGAAGTACAGTCTTCCACAACAGTGCCTCCTTCCCTTGACAGCAGAAGACAAGAGGAAAACGGAGGCAATGCTACTTCGATGCTACTTACAAAGAGAAGCCCCACAGTGGAGATTGGAGCTACAGTTGATGCTGGAAAGAGGAGTGAAGTTTGAGTTAGAAGCGTTGTCTGTGCACGAAATTAACTTTTTGTCGGAGGTGTACATACCATCTAAAATTCAAGGTGGAGTACACATCTAA

Protein Analysis

366

Amino Acids

42.48

Weight (kDa)

7.92

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 78 - 139 3.3e-21 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 189 - 359 3.1e-65 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014977)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccII CGCG 4 cut(s) 37, 43, 45, 816
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 4 cut(s) 35, 37, 41, 196
AclWI GGATC 1 cut(s) 734
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 3 cut(s) 68, 806, 1074
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 4 cut(s) 828, 866, 1061, 1089
AfiI CCNNNNNNNGG 3 cut(s) 678, 771, 966
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 6 cut(s) 89, 162, 412, 530, 596, 1079
AjiI CACGTC 1 cut(s) 653
AleI CACNNNNGTG 1 cut(s) 880
AluBI AGCT 6 cut(s) 27, 80, 177, 467, 557, 979
AluI AGCT 6 cut(s) 27, 80, 177, 467, 557, 979
Alw21I GWGCWC 2 cut(s) 29, 1035
Alw26I GTCTC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 1031
AlwI GGATC 1 cut(s) 734
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 2 cut(s) 75, 821
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 3 cut(s) 38, 494, 792
ApaLI GTGCAC 1 cut(s) 1031
ApoI RAATTY 3 cut(s) 68, 806, 1074
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
AspLEI GCGC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 177
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 2 cut(s) 75, 821
BaeGI GKGCMC 1 cut(s) 1035
BanII GRGCYC 2 cut(s) 29, 693
BbsI GAAGAC 2 cut(s) 863, 912
Bbv12I GWGCWC 2 cut(s) 29, 1035
BccI CCATC 2 cut(s) 15, 1075
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciVI GTATCC 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 3 cut(s) 389, 423, 980
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 1 cut(s) 91
BisI GCNGC 3 cut(s) 35, 38, 41
BlsI GCNGC 3 cut(s) 36, 39, 42
BmeT110I CYCGRG 2 cut(s) 75, 821
BmgBI CACGTC 1 cut(s) 653
BmiI GGNNCC 2 cut(s) 692, 841
BmsI GCATC 6 cut(s) 334, 645, 718, 790, 929, 978
BoxI GACNNNNGTC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 863, 912
BpmI CTGGAG 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 236
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 2 cut(s) 122, 738
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 35, 822
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 6 cut(s) 746, 776, 870, 900, 968, 998
Bsc4I CCNNNNNNNGG 3 cut(s) 678, 771, 966
Bse1I ACTGG 3 cut(s) 20, 613, 652
Bse3DI GCAATG 3 cut(s) 106, 631, 933
Bse8I GATNNNNATC 2 cut(s) 122, 738
BseAI TCCGGA 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 35, 822
BseGI GGATG 2 cut(s) 325, 756
BseJI GATNNNNATC 2 cut(s) 122, 738
BseLI CCNNNNNNNGG 3 cut(s) 678, 771, 966
BseMI GCAATG 3 cut(s) 106, 631, 933
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 3 cut(s) 20, 613, 652
BseRI GAGGAG 1 cut(s) 1014
BseSI GKGCMC 1 cut(s) 1035
BseX3I CGGCCG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 130
Bsh1236I CGCG 4 cut(s) 37, 43, 45, 816
Bsh1285I CGRYCG 2 cut(s) 41, 130
BshFI GGCC 3 cut(s) 40, 496, 794
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 2 cut(s) 41, 130
BsiHKAI GWGCWC 2 cut(s) 29, 1035
BsiHKCI CYCGRG 2 cut(s) 75, 821
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 500, 803
BslI CCNNNNNNNGG 3 cut(s) 678, 771, 966
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 500, 803
BsnI GGCC 3 cut(s) 40, 496, 794
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 2 cut(s) 75, 821
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 29, 693, 1035
Bsp13I TCCGGA 1 cut(s) 112
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 5 cut(s) 46, 91, 127, 343, 739
BspACI CCGC 4 cut(s) 35, 37, 41, 196
BspANI GGCC 3 cut(s) 40, 496, 794
BspCNI CTCAG 1 cut(s) 869
BspDI ATCGAT 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 4 cut(s) 37, 43, 45, 816
BspLI GGNNCC 2 cut(s) 692, 841
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 3 cut(s) 106, 631, 933
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 3 cut(s) 20, 613, 652
BssECI CCNNGG 2 cut(s) 35, 822
BssMI GATC 5 cut(s) 46, 91, 127, 343, 739
Bst4CI ACNGT 7 cut(s) 108, 362, 749, 869, 882, 966, 984
Bst6I CTCTTC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 1059
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 4 cut(s) 53, 95, 303, 856
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 325, 756
BstFNI CGCG 4 cut(s) 37, 43, 45, 816
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 5 cut(s) 49, 94, 130, 346, 742
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 5 cut(s) 46, 91, 127, 343, 739
BstMCI CGRYCG 2 cut(s) 41, 130
BstMWI GCNNNNNNNGC 5 cut(s) 40, 49, 174, 280, 800
BstNSI RCATGY 1 cut(s) 325
BstPAI GACNNNNGTC 1 cut(s) 298
BstSFI CTRYAG 3 cut(s) 389, 423, 980
BstSLI GKGCMC 1 cut(s) 1035
BstUI CGCG 4 cut(s) 37, 43, 45, 816
BstV2I GAAGAC 2 cut(s) 863, 912
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BstZI CGGCCG 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 126
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 3 cut(s) 40, 496, 794
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 35
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 2 cut(s) 325, 756
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 6 cut(s) 13, 398, 556, 645, 887, 971
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 467
CciNI GCGGCCGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 45
Cfr42I CCGCGG 1 cut(s) 38
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 805
Csp6I GTAC 4 cut(s) 827, 865, 1060, 1088
CviAII CATG 3 cut(s) 227, 322, 524
CviQI GTAC 4 cut(s) 827, 865, 1060, 1088
DdeI CTNAG 4 cut(s) 53, 95, 303, 856
DpnI GATC 5 cut(s) 48, 93, 129, 345, 741
DpnII GATC 5 cut(s) 46, 91, 127, 343, 739
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 29, 693
Eco31I GGTCTC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 313
Eco52I CGGCCG 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 75, 821
EcoICRI GAGCTC 1 cut(s) 27
EcoRV GATATC 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 327
EcoT38I GRGCYC 2 cut(s) 29, 693
FaeI CATG 3 cut(s) 230, 325, 527
FaqI GGGAC 2 cut(s) 500, 803
FatI CATG 3 cut(s) 226, 321, 523
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 35, 38, 41
FokI GGATG 2 cut(s) 312, 743
FriOI GRGCYC 2 cut(s) 29, 693
Fsp4HI GCNGC 3 cut(s) 35, 38, 41
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 35, 38, 41
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 3 cut(s) 40, 496, 794
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 805
HhaI GCGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 230, 325, 527
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 6 cut(s) 151, 158, 182, 202, 584, 854
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 4 cut(s) 358, 1033, 1060, 1090
Hpy188I TCNGA 7 cut(s) 65, 137, 343, 463, 853, 859, 1054
Hpy188III TCNNGA 3 cut(s) 113, 155, 662
Hpy8I GTNNAC 4 cut(s) 358, 1033, 1060, 1090
HpyAV CCTTC 8 cut(s) 210, 339, 395, 517, 672, 853, 858, 899
HpyCH4III ACNGT 7 cut(s) 108, 362, 749, 869, 882, 966, 984
HpyCH4IV ACGT 2 cut(s) 474, 652
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 49, 174, 280, 800
HpyF3I CTNAG 4 cut(s) 53, 95, 303, 856
HpySE526I ACGT 2 cut(s) 474, 652
Hsp92II CATG 3 cut(s) 230, 325, 527
HspAI GCGC 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 112
KspI CCGCGG 1 cut(s) 38
Kzo9I GATC 5 cut(s) 46, 91, 127, 343, 739
LmnI GCTCC 4 cut(s) 24, 696, 839, 976
LpnPI CCDG 9 cut(s) 126, 433, 453, 478, 626, 633, 675, 817, 977
LweI GCATC 6 cut(s) 334, 645, 718, 790, 929, 978
MaeII ACGT 2 cut(s) 474, 652
MalI GATC 5 cut(s) 48, 93, 129, 345, 741
MboI GATC 5 cut(s) 46, 91, 127, 343, 739
MboII GAAGA 4 cut(s) 101, 542, 863, 917
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 29, 693, 1035
MluCI AATT 7 cut(s) 68, 139, 163, 406, 806, 1038, 1074
MluI ACGCGT 1 cut(s) 814
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 1032
MnlI CCTC 9 cut(s) 300, 526, 770, 817, 896, 906, 916, 992, 1048
Mph1103I ATGCAT 1 cut(s) 327
MroI TCCGGA 1 cut(s) 112
MseI TTAA 2 cut(s) 452, 1041
MslI CAYNNNNRTG 2 cut(s) 190, 880
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 113
MvnI CGCG 4 cut(s) 37, 43, 45, 816
MwoI GCNNNNNNNGC 5 cut(s) 40, 49, 174, 280, 800
NdeII GATC 5 cut(s) 46, 91, 127, 343, 739
NlaIII CATG 3 cut(s) 230, 325, 527
NlaIV GGNNCC 2 cut(s) 692, 841
NotI GCGGCCGC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 327
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 75
PfeI GAWTC 5 cut(s) 151, 158, 182, 202, 584
PkrI GCNGC 3 cut(s) 36, 39, 42
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PshAI GACNNNNGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 692, 841
PspXI VCTCGAGB 1 cut(s) 75
PstI CTGCAG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 91
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 4 cut(s) 828, 866, 1061, 1089
RsaNI GTAC 4 cut(s) 827, 865, 1060, 1088
RseI CAYNNNNRTG 2 cut(s) 190, 880
SacI GAGCTC 1 cut(s) 29
SacII CCGCGG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 452, 1041
SatI GCNGC 3 cut(s) 35, 38, 41
Sau3AI GATC 5 cut(s) 46, 91, 127, 343, 739
SchI GAGTC 1 cut(s) 848
SduI GDGCHC 3 cut(s) 29, 693, 1035
SfaNI GCATC 6 cut(s) 334, 645, 718, 790, 929, 978
SfcI CTRYAG 3 cut(s) 389, 423, 980
Sfr274I CTCGAG 1 cut(s) 75
Sfr303I CCGCGG 1 cut(s) 38
SfuI TTCGAA 1 cut(s) 214
SgrBI CCGCGG 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 2 cut(s) 190, 880
SmlI CTYRAG 2 cut(s) 75, 251
SmoI CTYRAG 2 cut(s) 75, 251
Sse9I AATT 7 cut(s) 68, 139, 163, 406, 806, 1038, 1074
SsiI CCGC 4 cut(s) 35, 37, 41, 196
SstI GAGCTC 1 cut(s) 29
TaaI ACNGT 7 cut(s) 108, 362, 749, 869, 882, 966, 984
TaiI ACGT 2 cut(s) 477, 655
TaqI TCGA 5 cut(s) 76, 126, 180, 214, 937
TasI AATT 7 cut(s) 68, 139, 163, 406, 806, 1038, 1074
TatI WGTACW 3 cut(s) 864, 1059, 1087
TauI GCSGC 3 cut(s) 37, 40, 43
TfiI GAWTC 5 cut(s) 151, 158, 182, 202, 584
Tru1I TTAA 2 cut(s) 452, 1041
Tru9I TTAA 2 cut(s) 452, 1041
TscAI CASTG 6 cut(s) 20, 398, 556, 652, 887, 971
TspDTI ATGAA 2 cut(s) 117, 512
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 6 cut(s) 20, 398, 556, 652, 887, 971
VneI GTGCAC 1 cut(s) 1031
XapI RAATTY 3 cut(s) 68, 806, 1074
XceI RCATGY 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.