Rw0G009540

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00372
OG0014977
Physical Location & Seq
Reverse (-)
19452 .. 20553
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009540.1

Sequence Viewer

Length: 738 bp
ATGGATTCTTCCTCTGCAAAAATGGGTTTTATTGAGAATCAAAGTGGTGCATCAATATTAGCTTCGCTAAGTGATTCTAACCATGAAGGCATCGAAAGACTGCAGTATGAACTTAGCTATCAAATGTGGAACCAGATTCATTCAGTTGATTTTGTTCTTTTGCAGACATGTGTTATGAATGCAAATATGGATTGTGAAAAATGTAGGTTAAAAGTCTATGAAGTCGTGATCAATGTCTATGGTACTTATTCAATAGACATAGATGCAGAACAATCGATGGTAAAAGTTTCAGGCAAAGTAAATCCAAAGATAATTCTACAGGTGCTTGGAGGGAAACATGCCAAGGTAAAAAGTGTCAAGTTTGATAGTGAGGAACCGTCCATGGGGGGCGGTTATCCCCCTCCCCCTCCCCCTCCTCTTCCCCCATACGGAATGGGGTTGGGGCCCCATCCCTATTCCTATCCGAATGGAGGGCCATATGGCTACCCCATGATGATGCCACCACTTCTGATGCTGCCACCGTCACCACCACCACCACCACCATCAGTGGCAGCACAACCTCAACAAAAACCAACATTACTTTTAGAAGCACCACCCCAGAATTCGGGGGCCACAGCACAACCACAAAATTCAGGAACGTCAGCACCACCAACCACTAATGTTGCAGAGGAGGCAGTGATACCCTCAGATAAGAAGTCTAAGCGTTGCGGCATCGTGAAGAATTGCAGCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

245

Amino Acids

26.34

Weight (kDa)

6.08

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13140
fragaria_vesca FvH4_3g29421
malus_domestica MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis pycom11g17370
rosa_chinensis RchiOBHm_Chr5g0053851
rosa_multiflora Rmu_sc0001759.1_g000008
rosa_roxburghii Rroxscaffold_1G00026750
rosa_samantha Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 390, 708
AcsI RAATTY 2 cut(s) 601, 628
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 4 cut(s) 383, 428, 470, 604
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 252
AluBI AGCT 2 cut(s) 62, 117
AluI AGCT 2 cut(s) 62, 117
AoxI GGCC 3 cut(s) 443, 473, 609
ApaI GGGCCC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 514, 551, 726
ApoI RAATTY 2 cut(s) 601, 628
AspS9I GGNCC 4 cut(s) 443, 444, 473, 609
AsuHPI GGTGA 1 cut(s) 516
BaeGI GKGCMC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 501, 563
BccI CCATC 3 cut(s) 271, 456, 550
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BclI TGATCA 1 cut(s) 228
BfmI CTRYAG 2 cut(s) 101, 317
BisI GCNGC 4 cut(s) 515, 552, 709, 727
BlsI GCNGC 4 cut(s) 516, 553, 710, 728
BmgT120I GGNCC 4 cut(s) 443, 444, 473, 609
BmiI GGNNCC 6 cut(s) 131, 375, 444, 445, 446, 610
BmsI GCATC 6 cut(s) 59, 99, 253, 486, 501, 720
Bsa29I ATCGAT 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 342, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 428, 470, 604
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 342, 381
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 4 cut(s) 383, 428, 470, 604
BseMII CTCAG 1 cut(s) 699
BseRI GAGGAG 2 cut(s) 405, 683
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 2 cut(s) 501, 563
BshFI GGCC 3 cut(s) 445, 475, 611
BshVI ATCGAT 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 383, 428, 470, 604
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 3 cut(s) 445, 475, 611
Bsp120I GGGCCC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 1 cut(s) 228
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 2 cut(s) 390, 708
BspANI GGCC 3 cut(s) 445, 475, 611
BspCNI CTCAG 1 cut(s) 698
BspDI ATCGAT 1 cut(s) 275
BspLI GGNNCC 6 cut(s) 131, 375, 444, 445, 446, 610
BspMAI CTGCAG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 342, 381
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 342, 381
Bst4CI ACNGT 2 cut(s) 378, 522
Bst6I CTCTTC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 68, 113, 685, 699
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNSI RCATGY 2 cut(s) 171, 341
BstSFI CTRYAG 2 cut(s) 101, 317
BstSLI GKGCMC 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 501, 563
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 3 cut(s) 445, 475, 611
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 552, 681
Cfr13I GGNCC 4 cut(s) 443, 444, 473, 609
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 1 cut(s) 243
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 5 cut(s) 83, 168, 338, 382, 490
CviJI RGCY 6 cut(s) 62, 117, 445, 475, 483, 611
CviKI_1 RGCY 6 cut(s) 62, 117, 445, 475, 483, 611
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 4 cut(s) 68, 113, 685, 699
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 342, 381
Eco24I GRGCYC 1 cut(s) 447
EcoO109I RGGNCCY 2 cut(s) 443, 444
EcoRI GAATTC 1 cut(s) 601
EcoT14I CCWWGG 2 cut(s) 342, 381
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 342, 381
FaeI CATG 5 cut(s) 86, 171, 341, 385, 493
FatI CATG 5 cut(s) 82, 167, 337, 381, 489
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 515, 552, 709, 727
FokI GGATG 1 cut(s) 435
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 4 cut(s) 515, 552, 709, 727
GluI GCNGC 4 cut(s) 515, 552, 709, 727
HaeIII GGCC 3 cut(s) 445, 475, 611
Hin1II CATG 5 cut(s) 86, 171, 341, 385, 493
HinfI GANTC 4 cut(s) 5, 37, 74, 136
HphI GGTGA 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 465, 510, 688
Hpy188III TCNNGA 3 cut(s) 226, 633, 715
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 378, 522
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 8 cut(s) 17, 50, 103, 163, 182, 266, 665, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 4 cut(s) 68, 113, 685, 699
HpySE526I ACGT 1 cut(s) 638
Hsp92II CATG 5 cut(s) 86, 171, 341, 385, 493
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 146, 276, 305, 611, 618
Lsp1109I GCAGC 2 cut(s) 501, 563
LweI GCATC 6 cut(s) 59, 99, 253, 486, 501, 720
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 522
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 410, 730
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 312, 601, 628, 721
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 671
NcoI CCATGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 478
NdeII GATC 1 cut(s) 228
NlaIII CATG 5 cut(s) 86, 171, 341, 385, 493
NlaIV GGNNCC 6 cut(s) 131, 375, 444, 445, 446, 610
NmuCI GTSAC 1 cut(s) 522
NspI RCATGY 2 cut(s) 171, 341
PciI ACATGT 1 cut(s) 167
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 4 cut(s) 5, 37, 74, 136
PkrI GCNGC 4 cut(s) 516, 553, 710, 728
PscI ACATGT 1 cut(s) 167
PspN4I GGNNCC 6 cut(s) 131, 375, 444, 445, 446, 610
PspOMI GGGCCC 1 cut(s) 443
PspPI GGNCC 4 cut(s) 443, 444, 473, 609
PstI CTGCAG 1 cut(s) 105
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 494
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 4 cut(s) 515, 552, 709, 727
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 4 cut(s) 443, 444, 473, 609
SduI GDGCHC 1 cut(s) 447
SetI ASST 7 cut(s) 64, 119, 209, 324, 348, 562, 641
SfaNI GCATC 6 cut(s) 59, 99, 253, 486, 501, 720
SfcI CTRYAG 2 cut(s) 101, 317
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 4 cut(s) 312, 601, 628, 721
SsiI CCGC 2 cut(s) 390, 708
SspI AATATT 1 cut(s) 57
StyI CCWWGG 2 cut(s) 342, 381
TaaI ACNGT 2 cut(s) 378, 522
TaiI ACGT 1 cut(s) 641
TaqI TCGA 2 cut(s) 93, 275
TasI AATT 4 cut(s) 312, 601, 628, 721
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 4 cut(s) 5, 37, 74, 136
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 552, 681
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 3 cut(s) 514, 551, 726
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 5 cut(s) 99, 123, 128, 191, 234
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 2 cut(s) 552, 681
XapI RAATTY 2 cut(s) 601, 628
XceI RCATGY 2 cut(s) 171, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.