Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001759.1

Orthogroup ID

OG0014977

Physical Location & Seq

Genomic Coordinates Reverse (-)

25062 .. 27623

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001759.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggcgtatgatgcaaaatttctacgggtccccgagataatctggcttggagccttccctttggactcggagaagtaccatcttccacaccagtgtctccttcctttgactgcagaagacaagaggaaaactgaagccatgttacagagatgctacttagaaagagaagtgccacagtggagattggagctacagttgatgctggaaagaggcgtgaaatttgagctagaagcattgtctggttttattgagaatcaaagtggtgcatcaatattagcttcgctaagtggttctaaccatgaaggcatcgaaagactgcagtatgaacttagctatcaaatgtggaaccagattcattcagatgattttgttcttttgcagacatgtgttatgaatgcaaatatggattgcgaaaaatgtaggttaaaagtctatgaagtcgtgatcaatgtctatggtgcttattcaatagacatagatgcagaacaatcgatggtaaaagtttcaggcaaagtaaatccaaagataattctacaggtgcttggagggaaacatgccaaggtaaaaagtgtcaagtttgatagtgaggaaccgtccatggggggcggttatccccctccccctccccctcctcttcccccatacggaatggggctggggccccatccctattcctatccgaatggagggccatatgactaccccatgatgatgccaccacttctgatgctgccaccatcaccaccgccaccaccaccaccaccagtggcagcacaacctcaacaaaaaccaacattactattagaggcaccaccccagaattcgggggccacagcacaaccacaaaattcaggaacgtcagcaccaccaaccactaatgttgcagaggaggcagtgataccctcagataagaagtctaagcgttgcggcatcgtcaagaattgcagcattatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

318

Amino Acids

35.12

Weight (kDa)

5.75

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13140
fragaria_vesca	FvH4_3g29421
malus_domestica	MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica	Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis	pycom11g17370
rosa_chinensis	RchiOBHm_Chr5g0053851
rosa_multiflora	Rmu_sc0001759.1_g000008
rosa_roxburghii	Rroxscaffold_1G00026750
rosa_samantha	Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana	Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	808
AciI	CCGC	3 cut(s)	606, 746, 927
AcsI	RAATTY	4 cut(s)	17, 218, 820, 847
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	4 cut(s)	599, 644, 686, 823
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	468
AleI	CACNNNNGTG	1 cut(s)	91
AluBI	AGCT	4 cut(s)	190, 226, 278, 333
AluI	AGCT	4 cut(s)	190, 226, 278, 333
Alw26I	GTCTC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	659, 689, 828
ApaI	GGGCCC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	730, 770, 945
ApoI	RAATTY	4 cut(s)	17, 218, 820, 847
AspS9I	GGNCC	5 cut(s)	28, 659, 660, 689, 828
AsuHPI	GGTGA	1 cut(s)	732
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	663
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	717, 782
BccI	CCATC	4 cut(s)	87, 487, 672, 745
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	4 cut(s)	111, 191, 317, 533
BisI	GCNGC	4 cut(s)	731, 771, 928, 946
BlsI	GCNGC	4 cut(s)	732, 772, 929, 947
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	5 cut(s)	28, 659, 660, 689, 828
BmsI	GCATC	8 cut(s)	140, 189, 275, 315, 469, 702, 717, 939
BpiI	GAAGAC	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	558, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	599, 644, 686, 823
Bse1I	ACTGG	2 cut(s)	91, 764
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	558, 597
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	4 cut(s)	599, 644, 686, 823
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	2 cut(s)	91, 764
BseRI	GAGGAG	2 cut(s)	621, 902
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	2 cut(s)	717, 782
BseYI	CCCAGC	1 cut(s)	655
BshFI	GGCC	3 cut(s)	661, 691, 830
BshNI	GGYRCC	1 cut(s)	808
BshVI	ATCGAT	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	599, 644, 686, 823
BsmAI	GTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	661, 691, 830
BsoBI	CYCGRG	1 cut(s)	32
Bsp120I	GGGCCC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	3 cut(s)	606, 746, 927
BspANI	GGCC	3 cut(s)	661, 691, 830
BspCNI	CTCAG	1 cut(s)	917
BspDI	ATCGAT	1 cut(s)	491
BspMAI	CTGCAG	2 cut(s)	115, 321
BspT107I	GGYRCC	1 cut(s)	808
BsrI	ACTGG	2 cut(s)	91, 764
BssECI	CCNNGG	2 cut(s)	558, 597
BssMI	GATC	1 cut(s)	444
BssT1I	CCWWGG	2 cut(s)	558, 597
Bst4CI	ACNGT	3 cut(s)	177, 195, 594
Bst6I	CTCTTC	1 cut(s)	639
BstDEI	CTNAG	5 cut(s)	157, 284, 329, 904, 918
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 890
BstNSI	RCATGY	2 cut(s)	387, 557
BstSFI	CTRYAG	4 cut(s)	111, 191, 317, 533
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	717, 782
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	491
BsuRI	GGCC	3 cut(s)	661, 691, 830
BsuTUI	ATCGAT	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	4 cut(s)	98, 182, 771, 900
Cfr13I	GGNCC	5 cut(s)	28, 659, 660, 689, 828
ClaI	ATCGAT	1 cut(s)	491
Csp6I	GTAC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviAII	CATG	6 cut(s)	139, 299, 384, 554, 598, 706
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	5 cut(s)	157, 284, 329, 904, 918
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	558, 597
Eco24I	GRGCYC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	32
EcoO109I	RGGNCCY	3 cut(s)	28, 659, 660
EcoRI	GAATTC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	558, 597
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	2 cut(s)	558, 597
FaeI	CATG	6 cut(s)	142, 302, 387, 557, 601, 709
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	138, 298, 383, 553, 597, 705
FauNDI	CATATG	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	731, 771, 928, 946
FokI	GGATG	1 cut(s)	651
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	4 cut(s)	731, 771, 928, 946
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	731, 771, 928, 946
GsaI	CCCAGC	1 cut(s)	659
HaeIII	GGCC	3 cut(s)	661, 691, 830
Hin1II	CATG	6 cut(s)	142, 302, 387, 557, 601, 709
HinfI	GANTC	3 cut(s)	65, 253, 352
HphI	GGTGA	1 cut(s)	732
Hpy188I	TCNGA	5 cut(s)	70, 361, 681, 726, 907
Hpy188III	TCNNGA	3 cut(s)	442, 852, 937
HpyAV	CCTTC	3 cut(s)	64, 110, 296
HpyCH4III	ACNGT	3 cut(s)	177, 195, 594
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	9 cut(s)	14, 113, 266, 319, 379, 398, 482, 884, 945
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 890
HpyF3I	CTNAG	5 cut(s)	157, 284, 329, 904, 918
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	6 cut(s)	142, 302, 387, 557, 601, 709
KflI	GGGWCCC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	50, 187
Lsp1109I	GCAGC	2 cut(s)	717, 782
LweI	GCATC	8 cut(s)	140, 189, 275, 315, 469, 702, 717, 939
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	3 cut(s)	74, 128, 626
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	6 cut(s)	17, 218, 528, 820, 847, 940
MlyI	GAGTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	3 cut(s)	91, 360, 710
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	2 cut(s)	11, 890
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	1 cut(s)	444
NlaIII	CATG	6 cut(s)	142, 302, 387, 557, 601, 709
NspI	RCATGY	2 cut(s)	387, 557
OliI	CACNNNNGTG	1 cut(s)	91
PciI	ACATGT	1 cut(s)	383
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	253, 352
PkrI	GCNGC	4 cut(s)	732, 772, 929, 947
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	28
PscI	ACATGT	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	655
PspOMI	GGGCCC	1 cut(s)	659
PspPI	GGNCC	5 cut(s)	28, 659, 660, 689, 828
PspPPI	RGGWCCY	1 cut(s)	28
PstI	CTGCAG	2 cut(s)	115, 321
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	3 cut(s)	91, 360, 710
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	4 cut(s)	731, 771, 928, 946
Sau3AI	GATC	1 cut(s)	444
Sau96I	GGNCC	5 cut(s)	28, 659, 660, 689, 828
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	9 cut(s)	192, 228, 280, 335, 425, 540, 564, 781, 860
SfaNI	GCATC	8 cut(s)	140, 189, 275, 315, 469, 702, 717, 939
SfcI	CTRYAG	4 cut(s)	111, 191, 317, 533
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	3 cut(s)	91, 360, 710
Sse9I	AATT	6 cut(s)	17, 218, 528, 820, 847, 940
SsiI	CCGC	3 cut(s)	606, 746, 927
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	2 cut(s)	558, 597
TaaI	ACNGT	3 cut(s)	177, 195, 594
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	2 cut(s)	309, 491
TasI	AATT	6 cut(s)	17, 218, 528, 820, 847, 940
TauI	GCSGC	1 cut(s)	930
TfiI	GAWTC	2 cut(s)	253, 352
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	4 cut(s)	98, 182, 771, 900
TseI	GCWGC	3 cut(s)	730, 770, 945
TspDTI	ATGAA	5 cut(s)	315, 339, 344, 407, 450
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	4 cut(s)	98, 182, 771, 900
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	4 cut(s)	17, 218, 820, 847
XceI	RCATGY	2 cut(s)	387, 557
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.