Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014977

Physical Location & Seq

Genomic Coordinates Forward (+)

25135054 .. 25136307

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1184600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGTTGAAGAGGTTAAAGGGGCGTGGCTATCCTGATATTCCCACAAGAAGGTTTTTGGGGCTCCTTGTTGATACTCTGCATCTCCCTATCTATTGCTTGGTAGATTGTGATCCGTACGGTTTTGACATCCTCTCGATGTATCGGTTTGGTTCTATGGTTAGGCTTGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000724 GO:0000725 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

58

Amino Acids

6.62

Weight (kDa)

8.74

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	6 - 52	5.2e-18	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13140
fragaria_vesca	FvH4_3g29421
malus_domestica	MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica	Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis	pycom11g17370
rosa_chinensis	RchiOBHm_Chr5g0053851
rosa_multiflora	Rmu_sc0001759.1_g000008
rosa_roxburghii	Rroxscaffold_1G00026750
rosa_samantha	Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana	Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	7
AlwI	GGATC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	108
BseGI	GGATG	1 cut(s)	126
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	48
BsiWI	CGTACG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	104
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	3 cut(s)	27, 61, 163
CviKI_1	RGCY	3 cut(s)	27, 61, 163
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco24I	GRGCYC	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	1 cut(s)	155
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	32, 133
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	1 cut(s)	45
LweI	GCATC	1 cut(s)	88
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	3, 140
MseI	TTAA	2 cut(s)	14, 172
NdeII	GATC	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	62
Pfl23II	CGTACG	1 cut(s)	114
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	14, 172
Sau3AI	GATC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	2 cut(s)	14, 53
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	6 cut(s)	35, 44, 57, 77, 109, 145
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	14, 172
Tru9I	TTAA	2 cut(s)	14, 172
TspGWI	ACGGA	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.