transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G13140 |
| fragaria_vesca | FvH4_3g29421 |
| malus_domestica | MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1 |
| prunus_persica | Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1 |
| pyrus_communis | pycom11g17370 |
| rosa_chinensis | RchiOBHm_Chr5g0053851 |
| rosa_multiflora | Rmu_sc0001759.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00026750 |
| rosa_samantha | Rh5AG353500 Rh5BG365100 Rh5CG390200 |
| rosa_wichuraiana | Rw0G002130 Rw0G009540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 214 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 242 |
| AciI | CCGC | 4 cut(s) | 212, 296, 299, 314 |
| AclWI | GGATC | 1 cut(s) | 257 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 211, 242, 245 |
| AluBI | AGCT | 2 cut(s) | 34, 468 |
| AluI | AGCT | 2 cut(s) | 34, 468 |
| Alw26I | GTCTC | 1 cut(s) | 278 |
| AlwI | GGATC | 1 cut(s) | 257 |
| Ama87I | CYCGRG | 1 cut(s) | 469 |
| AoxI | GGCC | 3 cut(s) | 426, 450, 462 |
| ApeKI | GCWGC | 1 cut(s) | 301 |
| AsuHPI | GGTGA | 1 cut(s) | 68 |
| AvaI | CYCGRG | 1 cut(s) | 469 |
| BalI | TGGCCA | 1 cut(s) | 452 |
| BanI | GGYRCC | 1 cut(s) | 214 |
| BbvI | GCAGC | 1 cut(s) | 288 |
| BccI | CCATC | 4 cut(s) | 5, 47, 86, 340 |
| BcoDI | GTCTC | 1 cut(s) | 278 |
| BisI | GCNGC | 3 cut(s) | 296, 299, 302 |
| BlsI | GCNGC | 3 cut(s) | 297, 300, 303 |
| BmeT110I | CYCGRG | 1 cut(s) | 469 |
| BmiI | GGNNCC | 1 cut(s) | 216 |
| BmsI | GCATC | 1 cut(s) | 273 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 452, 484 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 211, 242, 245 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| Bse3DI | GCAATG | 1 cut(s) | 395 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 211, 242, 245 |
| BseMI | GCAATG | 1 cut(s) | 395 |
| BseMII | CTCAG | 1 cut(s) | 377 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseXI | GCAGC | 1 cut(s) | 288 |
| BshFI | GGCC | 3 cut(s) | 428, 452, 464 |
| BshNI | GGYRCC | 1 cut(s) | 214 |
| BsiHKCI | CYCGRG | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 211, 242, 245 |
| BsmAI | GTCTC | 1 cut(s) | 278 |
| BsmBI | CGTCTC | 1 cut(s) | 278 |
| BsnI | GGCC | 3 cut(s) | 428, 452, 464 |
| BsoBI | CYCGRG | 1 cut(s) | 469 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspACI | CCGC | 4 cut(s) | 212, 296, 299, 314 |
| BspANI | GGCC | 3 cut(s) | 428, 452, 464 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspLI | GGNNCC | 1 cut(s) | 216 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BspT107I | GGYRCC | 1 cut(s) | 214 |
| BsrDI | GCAATG | 1 cut(s) | 395 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssMI | GATC | 1 cut(s) | 262 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 1 cut(s) | 466 |
| BstDEI | CTNAG | 1 cut(s) | 363 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMAI | GTCTC | 1 cut(s) | 278 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 292, 301, 322, 364, 397, 434 |
| BstNSI | RCATGY | 1 cut(s) | 29 |
| BstV1I | GCAGC | 1 cut(s) | 288 |
| BsuRI | GGCC | 3 cut(s) | 428, 452, 464 |
| Cac8I | GCNNGC | 1 cut(s) | 466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 429, 464 |
| CviJI | RGCY | 7 cut(s) | 34, 72, 367, 428, 452, 464, 468 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 72, 367, 428, 452, 464, 468 |
| DdeI | CTNAG | 1 cut(s) | 363 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eco88I | CYCGRG | 1 cut(s) | 469 |
| Esp3I | CGTCTC | 1 cut(s) | 278 |
| Fnu4HI | GCNGC | 3 cut(s) | 296, 299, 302 |
| Fsp4HI | GCNGC | 3 cut(s) | 296, 299, 302 |
| GluI | GCNGC | 3 cut(s) | 296, 299, 302 |
| HaeIII | GGCC | 3 cut(s) | 428, 452, 464 |
| HphI | GGTGA | 1 cut(s) | 68 |
| Hpy166II | GTNNAC | 1 cut(s) | 236 |
| Hpy188I | TCNGA | 1 cut(s) | 460 |
| Hpy8I | GTNNAC | 1 cut(s) | 236 |
| Hpy99I | CGWCG | 1 cut(s) | 346 |
| HpyAV | CCTTC | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 1 cut(s) | 47 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 325 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 292, 301, 322, 364, 397, 434 |
| HpyF3I | CTNAG | 1 cut(s) | 363 |
| HpySE526I | ACGT | 1 cut(s) | 47 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LpnPI | CCDG | 6 cut(s) | 3, 244, 410, 426, 442, 478 |
| Lsp1109I | GCAGC | 1 cut(s) | 288 |
| LweI | GCATC | 1 cut(s) | 273 |
| MaeII | ACGT | 1 cut(s) | 47 |
| MalI | GATC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 262 |
| MlsI | TGGCCA | 1 cut(s) | 452 |
| MluCI | AATT | 2 cut(s) | 326, 374 |
| MluNI | TGGCCA | 1 cut(s) | 452 |
| MnlI | CCTC | 4 cut(s) | 52, 239, 438, 454 |
| Mox20I | TGGCCA | 1 cut(s) | 452 |
| MscI | TGGCCA | 1 cut(s) | 452 |
| MslI | CAYNNNNRTG | 9 cut(s) | 114, 120, 126, 132, 138, 144, 168, 174, 281 |
| Msp20I | TGGCCA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 292, 301, 322, 364, 397, 434 |
| NdeII | GATC | 1 cut(s) | 262 |
| NlaIV | GGNNCC | 1 cut(s) | 216 |
| NspI | RCATGY | 1 cut(s) | 29 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 242 |
| PkrI | GCNGC | 3 cut(s) | 297, 300, 303 |
| PspN4I | GGNNCC | 1 cut(s) | 216 |
| RseI | CAYNNNNRTG | 9 cut(s) | 114, 120, 126, 132, 138, 144, 168, 174, 281 |
| SatI | GCNGC | 3 cut(s) | 296, 299, 302 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| SetI | ASST | 6 cut(s) | 36, 50, 63, 223, 322, 470 |
| SfaNI | GCATC | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 114, 120, 126, 132, 138, 144, 168, 174, 281 |
| Sse9I | AATT | 2 cut(s) | 326, 374 |
| SsiI | CCGC | 4 cut(s) | 212, 296, 299, 314 |
| TaiI | ACGT | 1 cut(s) | 50 |
| TasI | AATT | 2 cut(s) | 326, 374 |
| TauI | GCSGC | 2 cut(s) | 298, 301 |
| TseI | GCWGC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 242 |
| XceI | RCATGY | 1 cut(s) | 29 |