transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G13140 |
| fragaria_vesca | FvH4_3g29421 |
| malus_domestica | MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1 |
| prunus_persica | Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1 |
| pyrus_communis | pycom11g17370 |
| rosa_chinensis | RchiOBHm_Chr5g0053851 |
| rosa_multiflora | Rmu_sc0001759.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00026750 |
| rosa_samantha | Rh5AG353500 Rh5BG365100 Rh5CG390200 |
| rosa_wichuraiana | Rw0G002130 Rw0G009540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 114, 432 |
| AcsI | RAATTY | 2 cut(s) | 325, 352 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 107, 152, 194, 328 |
| AoxI | GGCC | 3 cut(s) | 167, 197, 333 |
| ApaI | GGGCCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 3 cut(s) | 238, 275, 450 |
| ApoI | RAATTY | 2 cut(s) | 325, 352 |
| AspS9I | GGNCC | 4 cut(s) | 167, 168, 197, 333 |
| AsuHPI | GGTGA | 1 cut(s) | 240 |
| BaeGI | GKGCMC | 1 cut(s) | 171 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| BbvI | GCAGC | 2 cut(s) | 225, 287 |
| BccI | CCATC | 3 cut(s) | 180, 253, 274 |
| BfmI | CTRYAG | 1 cut(s) | 41 |
| BisI | GCNGC | 4 cut(s) | 239, 276, 433, 451 |
| BlsI | GCNGC | 4 cut(s) | 240, 277, 434, 452 |
| BmgT120I | GGNCC | 4 cut(s) | 167, 168, 197, 333 |
| BmiI | GGNNCC | 5 cut(s) | 99, 168, 169, 170, 334 |
| BmsI | GCATC | 3 cut(s) | 210, 225, 444 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 105 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 107, 152, 194, 328 |
| BseDI | CCNNGG | 2 cut(s) | 66, 105 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 107, 152, 194, 328 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseRI | GAGGAG | 1 cut(s) | 407 |
| BseSI | GKGCMC | 1 cut(s) | 171 |
| BseXI | GCAGC | 2 cut(s) | 225, 287 |
| BseYI | CCCAGC | 1 cut(s) | 163 |
| BshFI | GGCC | 3 cut(s) | 169, 199, 335 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 107, 152, 194, 328 |
| BsnI | GGCC | 3 cut(s) | 169, 199, 335 |
| Bsp120I | GGGCCC | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| BspACI | CCGC | 2 cut(s) | 114, 432 |
| BspANI | GGCC | 3 cut(s) | 169, 199, 335 |
| BspCNI | CTCAG | 1 cut(s) | 422 |
| BspLI | GGNNCC | 5 cut(s) | 99, 168, 169, 170, 334 |
| BssECI | CCNNGG | 2 cut(s) | 66, 105 |
| BssT1I | CCWWGG | 2 cut(s) | 66, 105 |
| Bst4CI | ACNGT | 1 cut(s) | 102 |
| Bst6I | CTCTTC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 409, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 105 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 395 |
| BstNSI | RCATGY | 1 cut(s) | 65 |
| BstSFI | CTRYAG | 1 cut(s) | 41 |
| BstSLI | GKGCMC | 1 cut(s) | 171 |
| BstV1I | GCAGC | 2 cut(s) | 225, 287 |
| BsuRI | GGCC | 3 cut(s) | 169, 199, 335 |
| BtgI | CCRYGG | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BtsI | GCAGTG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 2 cut(s) | 276, 405 |
| Cfr13I | GGNCC | 4 cut(s) | 167, 168, 197, 333 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 367, 402 |
| CviAII | CATG | 3 cut(s) | 62, 106, 214 |
| CviJI | RGCY | 4 cut(s) | 163, 169, 199, 335 |
| CviKI_1 | RGCY | 4 cut(s) | 163, 169, 199, 335 |
| DdeI | CTNAG | 2 cut(s) | 409, 423 |
| Eam1104I | CTCTTC | 1 cut(s) | 144 |
| EarI | CTCTTC | 1 cut(s) | 144 |
| Eco130I | CCWWGG | 2 cut(s) | 66, 105 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| EcoO109I | RGGNCCY | 2 cut(s) | 167, 168 |
| EcoRI | GAATTC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 2 cut(s) | 66, 105 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| ErhI | CCWWGG | 2 cut(s) | 66, 105 |
| FaeI | CATG | 3 cut(s) | 65, 109, 217 |
| FaiI | YATR | 7 cut(s) | 63, 107, 151, 202, 204, 215, 458 |
| FatI | CATG | 3 cut(s) | 61, 105, 213 |
| FauNDI | CATATG | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 4 cut(s) | 239, 276, 433, 451 |
| FokI | GGATG | 1 cut(s) | 159 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| Fsp4HI | GCNGC | 4 cut(s) | 239, 276, 433, 451 |
| GluI | GCNGC | 4 cut(s) | 239, 276, 433, 451 |
| GsaI | CCCAGC | 1 cut(s) | 167 |
| HaeIII | GGCC | 3 cut(s) | 169, 199, 335 |
| Hin1II | CATG | 3 cut(s) | 65, 109, 217 |
| HphI | GGTGA | 1 cut(s) | 240 |
| Hpy188I | TCNGA | 3 cut(s) | 189, 234, 412 |
| Hpy188III | TCNNGA | 2 cut(s) | 357, 442 |
| HpyCH4III | ACNGT | 1 cut(s) | 102 |
| HpyCH4IV | ACGT | 1 cut(s) | 362 |
| HpyCH4V | TGCA | 2 cut(s) | 389, 450 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 395 |
| HpyF3I | CTNAG | 2 cut(s) | 409, 423 |
| HpySE526I | ACGT | 1 cut(s) | 362 |
| Hsp92II | CATG | 3 cut(s) | 65, 109, 217 |
| LpnPI | CCDG | 4 cut(s) | 29, 149, 335, 342 |
| Lsp1109I | GCAGC | 2 cut(s) | 225, 287 |
| LweI | GCATC | 3 cut(s) | 210, 225, 444 |
| MaeII | ACGT | 1 cut(s) | 362 |
| MboII | GAAGA | 2 cut(s) | 131, 134 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MluCI | AATT | 4 cut(s) | 36, 325, 352, 445 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 395 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeI | CATATG | 1 cut(s) | 202 |
| NlaIII | CATG | 3 cut(s) | 65, 109, 217 |
| NlaIV | GGNNCC | 5 cut(s) | 99, 168, 169, 170, 334 |
| NspI | RCATGY | 1 cut(s) | 65 |
| PkrI | GCNGC | 4 cut(s) | 240, 277, 434, 452 |
| PspFI | CCCAGC | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 5 cut(s) | 99, 168, 169, 170, 334 |
| PspOMI | GGGCCC | 1 cut(s) | 167 |
| PspPI | GGNCC | 4 cut(s) | 167, 168, 197, 333 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SatI | GCNGC | 4 cut(s) | 239, 276, 433, 451 |
| Sau96I | GGNCC | 4 cut(s) | 167, 168, 197, 333 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SetI | ASST | 4 cut(s) | 48, 72, 286, 365 |
| SfaNI | GCATC | 3 cut(s) | 210, 225, 444 |
| SfcI | CTRYAG | 1 cut(s) | 41 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| Sse9I | AATT | 4 cut(s) | 36, 325, 352, 445 |
| SsiI | CCGC | 2 cut(s) | 114, 432 |
| StyI | CCWWGG | 2 cut(s) | 66, 105 |
| TaaI | ACNGT | 1 cut(s) | 102 |
| TaiI | ACGT | 1 cut(s) | 365 |
| TasI | AATT | 4 cut(s) | 36, 325, 352, 445 |
| TauI | GCSGC | 1 cut(s) | 435 |
| TscAI | CASTG | 2 cut(s) | 276, 405 |
| TseI | GCWGC | 3 cut(s) | 238, 275, 450 |
| TspGWI | ACGGA | 1 cut(s) | 168 |
| TspRI | CASTG | 2 cut(s) | 276, 405 |
| XapI | RAATTY | 2 cut(s) | 325, 352 |
| XceI | RCATGY | 1 cut(s) | 65 |