FvH4_3g29421

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014977
Physical Location & Seq
Forward (+)
22508106 .. 22508782
677 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29421.t1

Sequence Viewer

Length: 576 bp
ATGTTGAACGCGAATATGGAATGTGAAAAGTGTAGGCTAAAAGTCTATGAAGTCTTGATCAGTGTCCATGGTGCTTATTCAATAGACATAGATGCCGAACAAGGAACGGTGAATGTTTCAGGGAAAGTAAATCCAAAGATCATTCTACAGCTGCTTGGAGGGATTCATGCCAAGATAAAAAGTGTTAAATTTGATGCTGAGGAACCATCCATGGCGGGCGGTTATCCCCCTCACCCTCCTCCTCCTCTCCCCCCATATGGAATGGGGCCCTATCCCTATCCCTATCCGACCGGAGGGCCATATGACTACCCCATGATGATGCCACCGGTTTTAATGATGCCACCGCCACCATCATCGTCAGTGGCAGCAGAATCTCAACGACCACCCACATTACTATTAGGAGCACCCCCACAAAATTCAGGGGCCGCAGCACCACAACCAGAGAGTTCAGAAACGTCAGCACCACAAACTGCTAATGTTGGAAAGGGGGCAGTGACACCCTCAGATAAGGTGTCTAAGAGTGGTGGCAGCAAGCAATGCAGCATCATGCGATGGGCTAGAAAAGGGTTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

192

Amino Acids

20.23

Weight (kDa)

8.71

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 5 - 60 1.3e-08 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014977)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13140
fragaria_vesca FvH4_3g29421
malus_domestica MD03G1184600.v1.1 MD03G1184800.v1.1 MD11G1201200.v1.1
prunus_persica Prupe.4G241700_v2.0.a1 Prupe.5G052600_v2.0.a1
pyrus_communis pycom11g17370
rosa_chinensis RchiOBHm_Chr5g0053851
rosa_multiflora Rmu_sc0001759.1_g000008
rosa_roxburghii Rroxscaffold_1G00026750
rosa_samantha Rh5AG353500 Rh5BG365100 Rh5CG390200
rosa_wichuraiana Rw0G002130 Rw0G009540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 5 cut(s) 215, 219, 344, 426, 571
AcsI RAATTY 2 cut(s) 188, 415
AfiI CCNNNNNNNGG 2 cut(s) 257, 293
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 7, 81
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw21I GWGCWC 1 cut(s) 406
AoxI GGCC 3 cut(s) 266, 296, 423
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 5 cut(s) 151, 365, 428, 528, 540
ApoI RAATTY 2 cut(s) 188, 415
AsiGI ACCGGT 1 cut(s) 325
AspS9I GGNCC 4 cut(s) 266, 267, 296, 423
AsuHPI GGTGA 2 cut(s) 121, 224
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 406
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 5 cut(s) 138, 377, 440, 540, 552
BccI CCATC 3 cut(s) 214, 358, 546
BclI TGATCA 1 cut(s) 57
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 6 cut(s) 152, 366, 426, 429, 529, 541
BlsI GCNGC 6 cut(s) 153, 367, 427, 430, 530, 542
BmgT120I GGNCC 4 cut(s) 266, 267, 296, 423
BmiI GGNNCC 5 cut(s) 204, 267, 268, 424, 569
BmsI GCATC 5 cut(s) 82, 184, 309, 327, 552
Bpu10I CCTNAGC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 67, 210
BsaWI WCCGGW 2 cut(s) 290, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 293
Bse118I RCCGGY 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 67, 210
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 257, 293
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 189, 516
BseRI GAGGAG 3 cut(s) 228, 231, 234
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 5 cut(s) 138, 377, 440, 540, 552
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 3 cut(s) 268, 298, 425
BshTI ACCGGT 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 2 cut(s) 291, 326
BslI CCNNNNNNNGG 2 cut(s) 257, 293
BsnI GGCC 3 cut(s) 268, 298, 425
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 270, 406
Bsp143I GATC 2 cut(s) 57, 138
Bsp19I CCATGG 2 cut(s) 67, 210
BspACI CCGC 5 cut(s) 215, 219, 344, 426, 571
BspANI GGCC 3 cut(s) 268, 298, 425
BspCNI CTCAG 2 cut(s) 190, 515
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 5 cut(s) 204, 267, 268, 424, 569
BsrDI GCAATG 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 67, 210
BssMI GATC 2 cut(s) 57, 138
BssT1I CCWWGG 2 cut(s) 67, 210
Bst4CI ACNGT 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 217, 533
BstDEI CTNAG 3 cut(s) 198, 502, 516
BstDSI CCRYGG 2 cut(s) 67, 210
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 2 cut(s) 60, 141
BstMBI GATC 2 cut(s) 57, 138
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 138, 377, 440, 540, 552
BsuRI GGCC 3 cut(s) 268, 298, 425
BtgI CCRYGG 2 cut(s) 67, 210
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 3 cut(s) 67, 366, 498
Cac8I GCNNGC 2 cut(s) 217, 533
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 4 cut(s) 266, 267, 296, 423
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 5 cut(s) 68, 167, 211, 313, 547
CviJI RGCY 6 cut(s) 37, 151, 268, 298, 425, 557
CviKI_1 RGCY 6 cut(s) 37, 151, 268, 298, 425, 557
DdeI CTNAG 3 cut(s) 198, 502, 516
DpnI GATC 2 cut(s) 59, 140
DpnII GATC 2 cut(s) 57, 138
Eco130I CCWWGG 2 cut(s) 67, 210
Eco24I GRGCYC 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 266, 267
EcoT14I CCWWGG 2 cut(s) 67, 210
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 67, 210
FaeI CATG 5 cut(s) 71, 170, 214, 316, 550
FatI CATG 5 cut(s) 67, 166, 210, 312, 546
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 2 cut(s) 256, 301
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 152, 366, 426, 429, 529, 541
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 6 cut(s) 152, 366, 426, 429, 529, 541
FspBI CTAG 1 cut(s) 558
GluI GCNGC 6 cut(s) 152, 366, 426, 429, 529, 541
HaeIII GGCC 3 cut(s) 268, 298, 425
HapII CCGG 2 cut(s) 291, 326
Hin1II CATG 5 cut(s) 71, 170, 214, 316, 550
HinfI GANTC 2 cut(s) 163, 371
HpaII CCGG 2 cut(s) 291, 326
HphI GGTGA 2 cut(s) 121, 224
Hpy188I TCNGA 3 cut(s) 288, 451, 505
Hpy188III TCNNGA 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 1 cut(s) 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 537
HpyF3I CTNAG 3 cut(s) 198, 502, 516
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 5 cut(s) 71, 170, 214, 316, 550
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 138
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 5 cut(s) 105, 304, 339, 405, 453
Lsp1109I GCAGC 5 cut(s) 138, 377, 440, 540, 552
LweI GCATC 5 cut(s) 82, 184, 309, 327, 552
MaeI CTAG 1 cut(s) 558
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 59, 140
MboI GATC 2 cut(s) 57, 138
MhlI GDGCHC 2 cut(s) 270, 406
MluCI AATT 2 cut(s) 188, 415
MmeI TCCRAC 2 cut(s) 311, 460
MnlI CCTC 9 cut(s) 152, 193, 240, 246, 249, 252, 255, 287, 511
MseI TTAA 2 cut(s) 186, 332
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 2 cut(s) 151, 573
MspI CCGG 2 cut(s) 291, 326
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 537
NcoI CCATGG 2 cut(s) 67, 210
NdeI CATATG 2 cut(s) 256, 301
NdeII GATC 2 cut(s) 57, 138
NlaIII CATG 5 cut(s) 71, 170, 214, 316, 550
NlaIV GGNNCC 5 cut(s) 204, 267, 268, 424, 569
NmuCI GTSAC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 163, 371
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 6 cut(s) 153, 367, 427, 430, 530, 542
PspN4I GGNNCC 5 cut(s) 204, 267, 268, 424, 569
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 4 cut(s) 266, 267, 296, 423
PvuII CAGCTG 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 186, 332
SatI GCNGC 6 cut(s) 152, 366, 426, 429, 529, 541
Sau3AI GATC 2 cut(s) 57, 138
Sau96I GGNCC 4 cut(s) 266, 267, 296, 423
SduI GDGCHC 2 cut(s) 270, 406
SetI ASST 3 cut(s) 153, 458, 513
SfaNI GCATC 5 cut(s) 82, 184, 309, 327, 552
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 2 cut(s) 188, 415
SsiI CCGC 5 cut(s) 215, 219, 344, 426, 571
SspMI CTAG 1 cut(s) 558
StyI CCWWGG 2 cut(s) 67, 210
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 458
TasI AATT 2 cut(s) 188, 415
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 163, 371
Tru1I TTAA 2 cut(s) 186, 332
Tru9I TTAA 2 cut(s) 186, 332
TscAI CASTG 3 cut(s) 67, 366, 498
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 5 cut(s) 151, 365, 428, 528, 540
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 2 cut(s) 63, 155
TspRI CASTG 3 cut(s) 67, 366, 498
XapI RAATTY 2 cut(s) 188, 415
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.