AT3G13677

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4475887 .. 4477092
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13677.3

Sequence Viewer

Length: 516 bp
ATGGGAAGCAGAGGTAATCGTGTGGGAGAAAGATGGAATGAGATGGATTGTGATGAGAAATCGAGTGTGATTCAGGAAGAGATCAAAAGGGTTTGTAAACTTCCATCAAACAGTGTTTATGCAGTTCATCGTCTCAAGGTTCTCAACAAAATCAACGACCTTTTATCTGTCCAAAACATTGTCTCAAGAGAAGGAGTTGGAATTGCTATTCACACAGCTCTCCTTTTGAGAATAATATACCACAGTTTGTGGGATGAGTTTCCTTTAGGCCGTAACATATTTCCCGATAGTGACACTCGGATGATGAAAACCCACAAGTCGCTCAAATTGGAAGTAAATGGCACATTCAGAGAAGAAGTGAGACGCCCATTAATCGTTAGGAATGGAGTTGTATATTGGTCTTGCATTCAAAGAAGCTATGTTTTGAAGTGCGAGAGATGGGAGCAATCCAAGCTAAGCTATAAGCGTGGCATGGGTGGAATTGTCCTTGGCGCGAATGTGGGAGAAGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.63

Weight (kDa)

9.51

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012454)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 364
AgsI TTSAA 2 cut(s) 410, 427
AluBI AGCT 4 cut(s) 218, 417, 454, 459
AluI AGCT 4 cut(s) 218, 417, 454, 459
Alw26I GTCTC 3 cut(s) 137, 187, 355
AoxI GGCC 1 cut(s) 268
AseI ATTAAT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 494
BccI CCATC 4 cut(s) 27, 37, 112, 432
BceAI ACGGC 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 137, 187, 355
BlpI GCTNAGC 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 119, 169
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 2 cut(s) 259, 306
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 1 cut(s) 270
BsmAI GTCTC 3 cut(s) 137, 187, 355
BsmBI CGTCTC 2 cut(s) 137, 355
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 270
BspFNI CGCG 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 487
Bst4CI ACNGT 2 cut(s) 113, 245
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 259, 306
BstFNI CGCG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 3 cut(s) 137, 187, 355
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstUI CGCG 1 cut(s) 494
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 259, 306
BtsIMutI CAGTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 494
CseI GACGC 1 cut(s) 372
CviAII CATG 1 cut(s) 472
CviJI RGCY 5 cut(s) 218, 270, 417, 454, 459
CviKI_1 RGCY 5 cut(s) 218, 270, 417, 454, 459
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 487
Esp3I CGTCTC 2 cut(s) 137, 355
FaeI CATG 1 cut(s) 475
FaiI YATR 7 cut(s) 120, 238, 278, 394, 420, 462, 473
FatI CATG 1 cut(s) 471
FokI GGATG 2 cut(s) 266, 313
GlaI GCGC 1 cut(s) 493
HaeIII GGCC 1 cut(s) 270
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HinfI GANTC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 300, 350
Hpy188III TCNNGA 3 cut(s) 74, 186, 284
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 185, 500
HpyCH4III ACNGT 2 cut(s) 113, 245
HpyCH4V TGCA 2 cut(s) 122, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 455
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 1 cut(s) 492
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 272, 290
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 2 cut(s) 89, 365
MluCI AATT 3 cut(s) 201, 326, 480
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 5
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 405
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 290
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 371
Sau3AI GATC 1 cut(s) 81
SetI ASST 8 cut(s) 16, 141, 162, 220, 419, 456, 461, 511
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 134, 184
SmoI CTYRAG 2 cut(s) 134, 184
Sse9I AATT 3 cut(s) 201, 326, 480
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 2 cut(s) 113, 245
TaqI TCGA 1 cut(s) 62
TasI AATT 3 cut(s) 201, 326, 480
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 116, 320
TspRI CASTG 1 cut(s) 118
VspI ATTAAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.