Prupe.4G189600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012454
Physical Location & Seq
Reverse (-)
11274050 .. 11275614
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G189600.1

Sequence Viewer

Length: 363 bp
ATGCGTTTAGTTAAAATCAATCCGCGGGGAACACAACTCAATGTTCCCTCTCTCAAATTGCTTCGTCGTTGCCGCTGTGTTGGCGAACAACAGGAACCTTTAACTGGCATGAGCACGCTTGACGCGACCATGGAAGATAGCTGCGGTGCCCGACCTAAGGCAACGTGGAAGAAAATGGGGCCTGTAGAGAAGGAGGCATCTGTGCACGAAGAAATGAAGAGGATGCAGAAGCTGCCAGCAAACAGTACTTATGTCACTCATAGGTTGCGGGTTCTCAACAAAATTCTGCAGCTTTTGTCCATTCAGAGAACTGCATCACAAGAACGGGAGTTGGAGTTGCTTTTTGCTGGGCTTTCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

9.87

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccII CGCG 2 cut(s) 25, 125
AciI CCGC 5 cut(s) 23, 25, 73, 144, 268
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 104, 157
AluBI AGCT 3 cut(s) 141, 232, 292
AluI AGCT 3 cut(s) 141, 232, 292
Alw21I GWGCWC 2 cut(s) 116, 207
Alw44I GTGCAC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 3 cut(s) 141, 232, 289
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 2 cut(s) 151, 207
BanI GGYRCC 1 cut(s) 146
Bbv12I GWGCWC 2 cut(s) 116, 207
BbvI GCAGC 3 cut(s) 128, 219, 301
BfmI CTRYAG 2 cut(s) 183, 287
BisI GCNGC 4 cut(s) 73, 142, 233, 290
BlsI GCNGC 4 cut(s) 74, 143, 234, 291
BmcAI AGTACT 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 96, 148, 180
BmsI GCATC 3 cut(s) 206, 213, 323
BsaJI CCNNGG 2 cut(s) 23, 129
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 157
Bse1I ACTGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 23, 129
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 104, 157
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 2 cut(s) 151, 207
BseXI GCAGC 3 cut(s) 128, 219, 301
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 25, 125
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 116, 207
BslI CCNNNNNNNGG 2 cut(s) 104, 157
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 3 cut(s) 116, 151, 207
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 5 cut(s) 23, 25, 73, 144, 268
BspANI GGCC 1 cut(s) 181
BspFNI CGCG 2 cut(s) 25, 125
BspLI GGNNCC 3 cut(s) 96, 148, 180
BspMAI CTGCAG 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 23, 129
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 116, 237
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 2 cut(s) 23, 129
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 2 cut(s) 25, 125
BstMWI GCNNNNNNNGC 2 cut(s) 81, 232
BstSFI CTRYAG 2 cut(s) 183, 287
BstSLI GKGCMC 2 cut(s) 151, 207
BstUI CGCG 2 cut(s) 25, 125
BstV1I GCAGC 3 cut(s) 128, 219, 301
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 2 cut(s) 23, 129
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 116, 237
CaiI CAGNNNCTG 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 26
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 109, 130
CviJI RGCY 5 cut(s) 141, 181, 232, 292, 352
CviKI_1 RGCY 5 cut(s) 141, 181, 232, 292, 352
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 112, 133
FaiI YATR 4 cut(s) 110, 131, 252, 261
FatI CATG 2 cut(s) 108, 129
FauI CCCGC 2 cut(s) 18, 261
Fnu4HI GCNGC 4 cut(s) 73, 142, 233, 290
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 73, 142, 233, 290
GluI GCNGC 4 cut(s) 73, 142, 233, 290
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 181
HgaI GACGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 112, 133
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 205, 226, 289, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 232
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 112, 133
KspI CCGCGG 1 cut(s) 26
LpnPI CCDG 5 cut(s) 77, 90, 195, 249, 333
Lsp1109I GCAGC 3 cut(s) 128, 219, 301
LweI GCATC 3 cut(s) 206, 213, 323
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 4 cut(s) 146, 181, 221, 229
MhlI GDGCHC 3 cut(s) 116, 151, 207
MluCI AATT 2 cut(s) 56, 282
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 3 cut(s) 58, 187, 213
MseI TTAA 2 cut(s) 12, 101
MspA1I CMGCKG 2 cut(s) 25, 75
MvnI CGCG 2 cut(s) 25, 125
MwoI GCNNNNNNNGC 2 cut(s) 81, 232
NcoI CCATGG 1 cut(s) 129
NlaIII CATG 2 cut(s) 112, 133
NlaIV GGNNCC 3 cut(s) 96, 148, 180
NmuCI GTSAC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PkrI GCNGC 4 cut(s) 74, 143, 234, 291
PspFI CCCAGC 1 cut(s) 347
PspN4I GGNNCC 3 cut(s) 96, 148, 180
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 232
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacII CCGCGG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 12, 101
SatI GCNGC 4 cut(s) 73, 142, 233, 290
Sau96I GGNCC 1 cut(s) 179
ScaI AGTACT 1 cut(s) 247
SduI GDGCHC 3 cut(s) 116, 151, 207
SetI ASST 7 cut(s) 100, 143, 157, 167, 234, 266, 294
SfaNI GCATC 3 cut(s) 206, 213, 323
SfcI CTRYAG 2 cut(s) 183, 287
Sfr303I CCGCGG 1 cut(s) 26
SgrBI CCGCGG 1 cut(s) 26
Sse9I AATT 2 cut(s) 56, 282
SsiI CCGC 5 cut(s) 23, 25, 73, 144, 268
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 167
TasI AATT 2 cut(s) 56, 282
TatI WGTACW 1 cut(s) 245
TauI GCSGC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 12, 101
Tru9I TTAA 2 cut(s) 12, 101
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 141, 232, 289
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 230
VneI GTGCAC 1 cut(s) 203
XapI RAATTY 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.