Rh5CG275600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012454
Physical Location & Seq
Reverse (-)
29869179 .. 29871959
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG275600.1

Sequence Viewer

Length: 240 bp
ATGAGTACGCTTGATGTGACCATGGAGGATAGTAGCAGTGGTGTCCGACCTAAAGCCCAATGGAAGCAAATGGGGCCTGCAGAGAAGGAGGCATCTGTACACGAAGAAGTCAAGAGAATGCAGAGGCTGCCTGCACACAGCTCCTATGTTACGCATCGATTGCGGGTTCTTAATAAGATTCTGCAGCTCCTGTCCATTCAGGTGCATAAACATTGTTTACATTTACTGTATTTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.21

Weight (kDa)

9.8

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 163
AfaI GTAC 2 cut(s) 7, 99
AluBI AGCT 2 cut(s) 141, 187
AluI AGCT 2 cut(s) 141, 187
AlwNI CAGNNNCTG 2 cut(s) 127, 190
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 127, 184
AspS9I GGNCC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 114, 196
BfaI CTAG 1 cut(s) 238
BfmI CTRYAG 2 cut(s) 78, 182
BisI GCNGC 2 cut(s) 128, 185
BlsI GCNGC 2 cut(s) 129, 186
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 2 cut(s) 101, 163
Bsa29I ATCGAT 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 114, 196
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 157
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 2 cut(s) 82, 186
BsrGI TGTACA 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 228
BstAPI GCANNNNNTGC 2 cut(s) 127, 160
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 78, 132
BstDSI CCRYGG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 73, 127, 160
BstSFI CTRYAG 2 cut(s) 78, 182
BstV1I GCAGC 2 cut(s) 114, 196
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 78, 132
CaiI CAGNNNCTG 2 cut(s) 127, 190
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 6, 98
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 56, 76, 127, 141, 187
CviKI_1 RGCY 5 cut(s) 56, 76, 127, 141, 187
CviQI GTAC 2 cut(s) 6, 98
Eco130I CCWWGG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 147, 207
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 128, 185
Fsp4HI GCNGC 2 cut(s) 128, 185
FspBI CTAG 1 cut(s) 238
GluI GCNGC 2 cut(s) 128, 185
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 100, 218
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 100, 218
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 80, 121, 134, 184, 205
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 127, 160
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 2 cut(s) 146, 192
LpnPI CCDG 4 cut(s) 90, 144, 185, 203
Lsp1109I GCAGC 2 cut(s) 114, 196
LweI GCATC 2 cut(s) 101, 163
MaeI CTAG 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 16, 148
MboII GAAGA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 19, 82, 117
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 73, 127, 160
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 16
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 129, 186
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 2 cut(s) 82, 186
PstNI CAGNNNCTG 2 cut(s) 127, 190
RsaI GTAC 2 cut(s) 7, 99
RsaNI GTAC 2 cut(s) 6, 98
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 128, 185
Sau96I GGNCC 1 cut(s) 74
SetI ASST 4 cut(s) 52, 143, 189, 204
SfaNI GCATC 2 cut(s) 101, 163
SfcI CTRYAG 2 cut(s) 78, 182
SgeI CNNG 9 cut(s) 23, 34, 89, 113, 124, 143, 176, 202, 212
SmiMI CAYNNNNRTG 1 cut(s) 200
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 157
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 127, 184
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 43
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.