FvH4_3g20900

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13949631 .. 13952368
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20900.t1

Sequence Viewer

Length: 258 bp
ATGAGTACGGTTGATGTGACCATGGAGGATAGTAGCGGTGGCGTCCAGCCTAAAGCTCCGTGGAAGGAAATGGGGCCTGTAGAGAAGGAGGCATCGGTACAAGAAGAAGTGAAGCGAATGCTGAGGCTGCCTGCTAACAGTACCTACGTTTCGCACCGATTGCGGGTTCTCAATAAGATTCTGCAGCTTCTCTCCATTCAGAGAACTACATCACAAGAACAGGAGTTGGAATTGCTTTTTGCTGGGCTGTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.55

Weight (kDa)

5.78

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012454)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 163
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 7, 99, 142
AfiI CCNNNNNNNGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 56, 187
AluI AGCT 2 cut(s) 56, 187
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 127, 184
AspS9I GGNCC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 114, 196
BfmI CTRYAG 2 cut(s) 78, 182
BisI GCNGC 2 cut(s) 128, 185
BlsI GCNGC 2 cut(s) 129, 186
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 21, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 21, 59
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 114, 196
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 163
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 36, 163
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 21, 59
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 10, 140
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 2 cut(s) 21, 59
BstMWI GCNNNNNNNGC 2 cut(s) 127, 160
BstSFI CTRYAG 2 cut(s) 78, 182
BstV1I GCAGC 2 cut(s) 114, 196
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 2 cut(s) 21, 59
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 6, 98, 141
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 49, 56, 76, 127, 187, 247
CviKI_1 RGCY 6 cut(s) 49, 56, 76, 127, 187, 247
CviQI GTAC 3 cut(s) 6, 98, 141
DdeI CTNAG 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 256
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 128, 185
Fsp4HI GCNGC 2 cut(s) 128, 185
GluI GCNGC 2 cut(s) 128, 185
GsaI CCCAGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 76
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 58, 79
HpyCH4III ACNGT 2 cut(s) 10, 140
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 160
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 59, 90, 144, 206, 228
Lsp1109I GCAGC 2 cut(s) 114, 196
LweI GCATC 1 cut(s) 101
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 19, 82, 117
Mva1269I GAATGC 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 127, 160
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 16
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 129, 186
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 186
RsaI GTAC 3 cut(s) 7, 99, 142
RsaNI GTAC 3 cut(s) 6, 98, 141
SatI GCNGC 2 cut(s) 128, 185
Sau96I GGNCC 1 cut(s) 74
SetI ASST 4 cut(s) 58, 146, 150, 189
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 2 cut(s) 78, 182
SgeI CNNG 9 cut(s) 34, 58, 72, 89, 113, 143, 176, 227, 233
Sse9I AATT 1 cut(s) 230
SsiI CCGC 2 cut(s) 36, 163
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 10, 140
TaiI ACGT 1 cut(s) 150
TasI AATT 1 cut(s) 230
TfiI GAWTC 1 cut(s) 178
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 127, 184
Tsp45I GTSAC 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.