Rh5BG243800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012454
Physical Location & Seq
Reverse (-)
29448954 .. 29450825
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG243800.1

Sequence Viewer

Length: 366 bp
ATGAGTACGCTTGATGTGACCATGGAGGATAGTAGCGGTGGTGTCCGACCTAAGGCTCAATTGAAGCAAATGGGGCCTGCAGAGAAGGAGGCATCTGTGCACGAAGAAGTCAAGAGAATGCAGAGGCTGCCTGCACACAGCTCCTATGTTACGCATCGATTGCGGGTTCTTAATAAGATTCTGCAGCTCCTGTCCATTCAGGTGAGTGCACATTATTTACATTTGCTGTATTTTAGTTCTGCTGTAGGTTCAATCATATCTGCGGGTTGGTGTTTTGTGATTGAGTTTCCGTACTTAACGTTGCCTTGCCTTGCTTTTAATATCAAAGTCCCAGTTACCTGCCTAGCATTTGTGCAGCACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

8.86

Isoelectric Point (pI)

60.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AciI CCGC 3 cut(s) 36, 163, 263
AclI AACGTT 1 cut(s) 299
AfaI GTAC 2 cut(s) 7, 293
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 64, 252
AluBI AGCT 2 cut(s) 141, 187
AluI AGCT 2 cut(s) 141, 187
Alw21I GWGCWC 2 cut(s) 102, 211
Alw44I GTGCAC 2 cut(s) 98, 207
AlwNI CAGNNNCTG 2 cut(s) 127, 190
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 2 cut(s) 98, 207
ApeKI GCWGC 3 cut(s) 127, 184, 355
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 2 cut(s) 102, 211
Bbv12I GWGCWC 2 cut(s) 102, 211
BbvI GCAGC 2 cut(s) 114, 196
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 3 cut(s) 78, 182, 243
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 3 cut(s) 128, 185, 356
BlsI GCNGC 3 cut(s) 129, 186, 357
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 101, 163
BmuI ACTGGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 332
Bse21I CCTNAGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 332
BseSI GKGCMC 2 cut(s) 102, 211
BseXI GCAGC 2 cut(s) 114, 196
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 2 cut(s) 102, 211
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 102, 211
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 36, 163, 263
BspANI GGCC 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 2 cut(s) 82, 186
BspMI ACCTGC 1 cut(s) 347
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 21
BstAPI GCANNNNNTGC 2 cut(s) 127, 160
BstC8I GCNNGC 2 cut(s) 78, 132
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 73, 127, 160
BstSFI CTRYAG 3 cut(s) 78, 182, 243
BstSLI GKGCMC 2 cut(s) 102, 211
BstV1I GCAGC 2 cut(s) 114, 196
Bsu15I ATCGAT 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 78, 132
CaiI CAGNNNCTG 2 cut(s) 127, 190
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 6, 292
CviAII CATG 1 cut(s) 22
CviJI RGCY 5 cut(s) 56, 76, 127, 141, 187
CviKI_1 RGCY 5 cut(s) 56, 76, 127, 141, 187
CviQI GTAC 2 cut(s) 6, 292
DdeI CTNAG 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 147, 257
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 21
FauI CCCGC 2 cut(s) 156, 256
Fnu4HI GCNGC 3 cut(s) 128, 185, 356
Fsp4HI GCNGC 3 cut(s) 128, 185, 356
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 128, 185, 356
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 178
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 100, 209
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 2 cut(s) 100, 209
HpyAV CCTTC 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 7 cut(s) 80, 100, 121, 134, 184, 209, 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 127, 160
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 2 cut(s) 146, 192
LpnPI CCDG 6 cut(s) 90, 144, 185, 203, 345, 352
Lsp1109I GCAGC 2 cut(s) 114, 196
LweI GCATC 2 cut(s) 101, 163
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 3 cut(s) 16, 148, 334
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 102, 211
MluCI AATT 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 19, 82, 117
MseI TTAA 3 cut(s) 171, 296, 318
MslI CAYNNNNRTG 1 cut(s) 200
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 73, 127, 160
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 16
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 129, 186, 357
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 2 cut(s) 82, 186
PstNI CAGNNNCTG 2 cut(s) 127, 190
RsaI GTAC 2 cut(s) 7, 293
RsaNI GTAC 2 cut(s) 6, 292
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 3 cut(s) 171, 296, 318
SatI GCNGC 3 cut(s) 128, 185, 356
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 102, 211
SetI ASST 7 cut(s) 52, 143, 189, 204, 250, 302, 341
SfaNI GCATC 2 cut(s) 101, 163
SfcI CTRYAG 3 cut(s) 78, 182, 243
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 1 cut(s) 59
SsiI CCGC 3 cut(s) 36, 163, 263
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 157
TasI AATT 1 cut(s) 59
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 171, 296, 318
Tru9I TTAA 3 cut(s) 171, 296, 318
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 3 cut(s) 127, 184, 355
Tsp45I GTSAC 1 cut(s) 16
TspGWI ACGGA 1 cut(s) 279
VneI GTGCAC 2 cut(s) 98, 207
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.