Rmu_sc0008116.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008116.1
OG0012454
Physical Location & Seq
Forward (+)
1697 .. 4448
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008116.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgccatctcacggggatctggaacgtcagatcgagcatctgatggagtgcaagaagttgccagaagcggaggcgaagacactgtgcaagcaagaggacatgagtacgcttgatgtgaccatggaggatagtagcggtggtgtccgacctaaagctcaattgaagcaaatggggcctgcggagaaggaggcatctgtgcacgaagaagtcaagagaatgcagaggcttcctgcacacagctcctatgttacgcatcgattgcgggttcttaataagattctgcagctcctgtccattcagagaactacttcacaagatcgggagttggaattgctttttgcggggctgtctctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.41

Weight (kDa)

6.52

Isoelectric Point (pI)

62.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 68, 135, 179, 262, 341
AclWI GGATC 1 cut(s) 24
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 3 cut(s) 155, 240, 286
AluI AGCT 3 cut(s) 155, 240, 286
Alw21I GWGCWC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 13, 37
BfmI CTRYAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 3 cut(s) 46, 200, 262
BpiI GAAGAC 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 11
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 16, 30, 316
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 5 cut(s) 68, 135, 179, 262, 341
BspANI GGCC 1 cut(s) 175
BspDI ATCGAT 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 3 cut(s) 16, 30, 316
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 89, 177
BstDSI CCRYGG 1 cut(s) 120
BstKTI GATC 3 cut(s) 19, 33, 319
BstMBI GATC 3 cut(s) 16, 30, 316
BstMWI GCNNNNNNNGC 2 cut(s) 172, 259
BstSFI CTRYAG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 256
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 89, 177
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 256
Csp6I GTAC 1 cut(s) 105
CviAII CATG 2 cut(s) 100, 121
CviJI RGCY 6 cut(s) 155, 175, 226, 240, 286, 346
CviKI_1 RGCY 6 cut(s) 155, 175, 226, 240, 286, 346
CviQI GTAC 1 cut(s) 105
DpnI GATC 3 cut(s) 18, 32, 318
DpnII GATC 3 cut(s) 16, 30, 316
Eco130I CCWWGG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 103, 124
FaiI YATR 4 cut(s) 101, 122, 246, 355
FatI CATG 2 cut(s) 99, 120
FauI CCCGC 2 cut(s) 255, 334
Fnu4HI GCNGC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 2 cut(s) 103, 124
HinfI GANTC 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 30, 42, 146, 300
Hpy188III TCNNGA 3 cut(s) 20, 211, 320
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 51, 87, 199, 220, 233, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 259
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 2 cut(s) 103, 124
Kzo9I GATC 3 cut(s) 16, 30, 316
LmnI GCTCC 2 cut(s) 245, 291
LpnPI CCDG 5 cut(s) 5, 75, 189, 243, 302
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 3 cut(s) 46, 200, 262
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 115, 247
MalI GATC 3 cut(s) 18, 32, 318
MboI GATC 3 cut(s) 16, 30, 316
MboII GAAGA 2 cut(s) 88, 215
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 158, 329
MmeI TCCRAC 2 cut(s) 169, 306
MnlI CCTC 5 cut(s) 64, 88, 118, 181, 216
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 1 cut(s) 270
MunI CAATTG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 172, 259
NcoI CCATGG 1 cut(s) 120
NdeII GATC 3 cut(s) 16, 30, 316
NlaIII CATG 2 cut(s) 103, 124
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 115
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 285
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 16, 30, 316
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 28, 151, 157, 242, 288
SfaNI GCATC 3 cut(s) 46, 200, 262
SfcI CTRYAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 158, 329
SsiI CCGC 5 cut(s) 68, 135, 179, 262, 341
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 33, 256
TasI AATT 2 cut(s) 158, 329
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 115
TspRI CASTG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.