RLG00000033617

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
29643219 .. 29644402
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033617

Sequence Viewer

Length: 315 bp
ATGGAGGATAGTAGGGGTGGTGTCCAGCCTAAAGCTCAATGGAAGCAAATGGGGCCTGCTGAGAAGGAGGCATCTGTGCACGAAGAAGTCAAGAGAATGCAGAGGCTGCCTGCACACAGCTCCTATGTTACGCATCGATTGCGGGTTCTTAATAAGATTCTGCAGCTCCTGTCCATTCAGTTAGAAGATAAAAAGAATTTGATCCGAGTATTTGATGCTGTTTTGCTCTTCCTGATGTTCCTCTCTATGTCAGAGAACTACTTCACAAGATCGGGAGTTGGAATTGCTTTTTGCGGGGCTGTCTCTATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

9.51

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012454)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 294
AclWI GGATC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 196
AluBI AGCT 3 cut(s) 35, 120, 166
AluI AGCT 3 cut(s) 35, 120, 166
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 307
Alw44I GTGCAC 1 cut(s) 77
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 2 cut(s) 106, 169
AoxI GGCC 1 cut(s) 53
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 106, 163
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 93, 175
BcoDI GTCTC 1 cut(s) 307
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 2 cut(s) 107, 164
BlsI GCNGC 2 cut(s) 108, 165
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 3 cut(s) 80, 142, 205
Bsa29I ATCGAT 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 136
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 2 cut(s) 93, 175
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 201, 269
BspACI CCGC 2 cut(s) 142, 294
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 52
BspDI ATCGAT 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 165
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 233
BssMI GATC 2 cut(s) 201, 269
Bst6I CTCTTC 1 cut(s) 233
BstAPI GCANNNNNTGC 2 cut(s) 106, 139
BstC8I GCNNGC 2 cut(s) 57, 111
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 2 cut(s) 204, 272
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 201, 269
BstMWI GCNNNNNNNGC 3 cut(s) 52, 106, 139
BstSFI CTRYAG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 93, 175
Bsu15I ATCGAT 1 cut(s) 136
BsuRI GGCC 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 57, 111
CaiI CAGNNNCTG 2 cut(s) 106, 169
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 136
CviJI RGCY 7 cut(s) 28, 35, 55, 106, 120, 166, 299
CviKI_1 RGCY 7 cut(s) 28, 35, 55, 106, 120, 166, 299
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 203, 271
DpnII GATC 2 cut(s) 201, 269
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 53
FaiI YATR 3 cut(s) 126, 248, 308
FauI CCCGC 2 cut(s) 135, 287
Fnu4HI GCNGC 2 cut(s) 107, 164
Fsp4HI GCNGC 2 cut(s) 107, 164
GluI GCNGC 2 cut(s) 107, 164
HaeIII GGCC 1 cut(s) 55
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 206, 253
Hpy188III TCNNGA 3 cut(s) 91, 232, 273
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 79, 100, 113, 163
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 106, 139
HpyF3I CTNAG 1 cut(s) 60
Kzo9I GATC 2 cut(s) 201, 269
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 125, 171
LpnPI CCDG 5 cut(s) 38, 69, 123, 182, 245
Lsp1109I GCAGC 2 cut(s) 93, 175
LweI GCATC 3 cut(s) 80, 142, 205
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 203, 271
MboI GATC 2 cut(s) 201, 269
MboII GAAGA 3 cut(s) 95, 197, 220
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 196, 282
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 3 cut(s) 61, 96, 251
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 52, 106, 139
NdeII GATC 2 cut(s) 201, 269
NlaIV GGNNCC 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 108, 165
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 53
PstI CTGCAG 1 cut(s) 165
PstNI CAGNNNCTG 2 cut(s) 106, 169
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 107, 164
Sau3AI GATC 2 cut(s) 201, 269
Sau96I GGNCC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 81
SetI ASST 3 cut(s) 37, 122, 168
SfaNI GCATC 3 cut(s) 80, 142, 205
SfcI CTRYAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 196, 282
SsiI CCGC 2 cut(s) 142, 294
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 196, 282
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseI GCWGC 2 cut(s) 106, 163
VneI GTGCAC 1 cut(s) 77
XapI RAATTY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.