pycom03g16880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012454
Physical Location & Seq
Forward (+)
18083278 .. 18084113
836 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16880.2

Sequence Viewer

Length: 462 bp
ATGAGTACGCCTGATGTGACCATGGAAGATGGCAGCGGTGCCCAACCGGAATCTCGATGGAAGCAAATGGGGCATGGGGAGAAGGAGGCGTCCGTGCACGAAGAAATGAAGAGAATGCAGAAGTTGCCTGCAAACAGCACTTACGTCACTCACCGGTTGCGGGTTCTCAACAAAATTCTCCAGCTTTTGTCCATTCAGTTTGCTTTGCTATGCAATATGGAATCTTGTGTTTTCTATATGATTCTGGTTAGAGTTAGAAGACAAATGAATTTGATTTCAGTATTTGATATCTTCTGTCTTCATTGTATGCCAGAGAACCGCATCACAAGAACAGGAGTTGGAGTTGCTTTTCGCCGGGCTGTCTATGTGAACTCAACCTTTCATGGTAGTGGTCAGGTCCAGTTAATGTTATATCTTGTGGAGTTAGATATTGTAATTACTTTTGCTGTGGAGTATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.62

Weight (kDa)

8.4

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 3 cut(s) 36, 160, 319
AcsI RAATTY 2 cut(s) 174, 268
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 160
AgeI ACCGGT 1 cut(s) 153
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 99
Alw44I GTGCAC 1 cut(s) 95
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 2 cut(s) 174, 268
AsiGI ACCGGT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 2 cut(s) 43, 99
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 265, 290
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 23, 51
BcnI CCSGG 1 cut(s) 356
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 330
BpiI GAAGAC 2 cut(s) 265, 290
BpmI CTGGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 46, 153
BsaXI ACNNNNNCTCC 3 cut(s) 327, 357, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 400
BseSI GKGCMC 2 cut(s) 43, 99
BseXI GCAGC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 38
BshTI ACCGGT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 3 cut(s) 47, 154, 355
BslI CCNNNNNNNGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 43, 99
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 36, 160, 319
BspLI GGNNCC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 70, 124
BstSCI CCNGG 1 cut(s) 354
BstSLI GKGCMC 2 cut(s) 43, 99
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 2 cut(s) 265, 290
BtgI CCRYGG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 397
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 6
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 3 cut(s) 22, 74, 383
CviJI RGCY 2 cut(s) 184, 359
CviKI_1 RGCY 2 cut(s) 184, 359
CviQI GTAC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 21
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 397
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 25, 77, 386
FatI CATG 3 cut(s) 21, 73, 382
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 164
HapII CCGG 3 cut(s) 47, 154, 355
HgaI GACGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 3 cut(s) 25, 77, 386
HinfI GANTC 3 cut(s) 50, 221, 241
HpaII CCGG 3 cut(s) 47, 154, 355
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 97, 370
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 97, 370
HpyAV CCTTC 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 97, 118, 131, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 124
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 3 cut(s) 25, 77, 386
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 330
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 16, 145
MboII GAAGA 6 cut(s) 38, 113, 121, 270, 283, 290
MhlI GDGCHC 2 cut(s) 43, 99
MluCI AATT 3 cut(s) 174, 268, 435
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 1 cut(s) 79
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 3 cut(s) 47, 154, 355
MspR9I CCNGG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 70, 124
NciI CCSGG 1 cut(s) 356
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 3 cut(s) 25, 77, 386
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 16, 145
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 50, 221, 241
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 397
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 2 cut(s) 43, 99
SetI ASST 4 cut(s) 147, 186, 380, 399
SfaNI GCATC 1 cut(s) 330
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 3 cut(s) 174, 268, 435
SsiI CCGC 3 cut(s) 36, 160, 319
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 21
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 55
TasI AATT 3 cut(s) 174, 268, 435
TfiI GAWTC 3 cut(s) 50, 221, 241
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseFI GTSAC 2 cut(s) 16, 145
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 2 cut(s) 16, 145
TspDTI ATGAA 4 cut(s) 122, 281, 290, 371
TspGWI ACGGA 1 cut(s) 82
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 2 cut(s) 174, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.