Rh5AG244300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012454
Physical Location & Seq
Reverse (-)
29816939 .. 29821614
4676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG244300.1

Sequence Viewer

Length: 378 bp
ATGTGTGAGAAAGAAGAAGTTAACAAGTCATCCTCCAAGGACATGAGTACGCTTGATGTGACCATGGAGGATAGTAGCGGTGGTGTCCGACCTAAGGCTCAATTGAAGCAAATGGGGCCTGCAGAGAAGGAGGCATCTGTGCACGAAGAAGTCAAGAGAATGCAGAGGCTGCCTGCACACAGCTCCTATGTTACGCATCGATTGCGGGTTCTTAATAAGATTCTGCAGCTCCTGTCCATTCAGTTAGAAGATAAAAAGAATTTGATCCGAGTATTTGATGCTGTTTTGCTCTTCCTGATGTTCCTTTCTATGTCAGAGAACTACTTCACAAGATCGGGAGTTGGAATTGCTTTTTGCGGGGCTGTCTCTATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.08

Weight (kDa)

8.6

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13677 AT3G13677 AT3G13677
fragaria_vesca FvH4_3g20900 FvH4_3g20900
malus_domestica MD03G1219500.v1.1
prunus_persica Prupe.4G189600_v2.0.a1 Prupe.4G189600_v2.0.a1
pyrus_communis pycom03g16880
rosa_chinensis RchiOBHm_Chr5g0035321
rosa_laevigata RLG00000033617
rosa_multiflora Rmu_sc0007948.1_g000013 Rmu_sc0008116.1_g000001
rosa_roxburghii Rroxscaffold_1G00045080
rosa_rugosa Rorug05G0151100
rosa_samantha Rh5AG244300 Rh5BG243800 Rh5CG275600
rosa_wichuraiana Rw5G022310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 78, 205, 357
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 183, 229
AluI AGCT 2 cut(s) 183, 229
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 370
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 2 cut(s) 169, 232
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 169, 226
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 156, 238
BcoDI GTCTC 1 cut(s) 370
BfmI CTRYAG 2 cut(s) 120, 224
BisI GCNGC 2 cut(s) 170, 227
BlsI GCNGC 2 cut(s) 171, 228
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 3 cut(s) 143, 205, 268
Bsa29I ATCGAT 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 36, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 36, 63
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 2 cut(s) 156, 238
BsgI GTGCAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 264, 332
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 78, 205, 357
BspANI GGCC 1 cut(s) 118
BspDI ATCGAT 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 124, 228
BspPI GGATC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 36, 63
BssMI GATC 2 cut(s) 264, 332
BssT1I CCWWGG 2 cut(s) 36, 63
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 2 cut(s) 169, 202
BstC8I GCNNGC 2 cut(s) 120, 174
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 2 cut(s) 267, 335
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 264, 332
BstMWI GCNNNNNNNGC 3 cut(s) 115, 169, 202
BstSFI CTRYAG 2 cut(s) 120, 224
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 156, 238
Bsu15I ATCGAT 1 cut(s) 199
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 120, 174
CaiI CAGNNNCTG 2 cut(s) 169, 232
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 43, 64
CviJI RGCY 6 cut(s) 98, 118, 169, 183, 229, 362
CviKI_1 RGCY 6 cut(s) 98, 118, 169, 183, 229, 362
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 266, 334
DpnII GATC 2 cut(s) 264, 332
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 36, 63
Eco81I CCTNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 36, 63
ErhI CCWWGG 2 cut(s) 36, 63
FaeI CATG 2 cut(s) 46, 67
FaiI YATR 5 cut(s) 44, 65, 189, 311, 371
FatI CATG 2 cut(s) 42, 63
FauI CCCGC 2 cut(s) 198, 350
Fnu4HI GCNGC 2 cut(s) 170, 227
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 170, 227
GluI GCNGC 2 cut(s) 170, 227
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 46, 67
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 220
HpaI GTTAAC 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 22, 142
Hpy188I TCNGA 3 cut(s) 89, 269, 316
Hpy188III TCNNGA 3 cut(s) 154, 295, 336
Hpy8I GTNNAC 2 cut(s) 22, 142
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 122, 142, 163, 176, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 169, 202
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 46, 67
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 2 cut(s) 264, 332
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 188, 234
LpnPI CCDG 4 cut(s) 132, 186, 245, 308
Lsp1109I GCAGC 2 cut(s) 156, 238
LweI GCATC 3 cut(s) 143, 205, 268
MaeIII GTNAC 2 cut(s) 58, 190
MalI GATC 2 cut(s) 266, 334
MboI GATC 2 cut(s) 264, 332
MboII GAAGA 4 cut(s) 26, 158, 260, 283
MfeI CAATTG 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 101, 259, 345
MmeI TCCRAC 2 cut(s) 112, 322
MnlI CCTC 4 cut(s) 43, 61, 124, 159
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 2 cut(s) 21, 213
MunI CAATTG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 115, 169, 202
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 264, 332
NlaIII CATG 2 cut(s) 46, 67
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 296
PctI GAATGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 171, 228
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
PstI CTGCAG 2 cut(s) 124, 228
PstNI CAGNNNCTG 2 cut(s) 169, 232
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 21, 213
SatI GCNGC 2 cut(s) 170, 227
Sau3AI GATC 2 cut(s) 264, 332
Sau96I GGNCC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 94, 185, 231
SfaNI GCATC 3 cut(s) 143, 205, 268
SfcI CTRYAG 2 cut(s) 120, 224
Sse9I AATT 3 cut(s) 101, 259, 345
SsiI CCGC 3 cut(s) 78, 205, 357
StyI CCWWGG 2 cut(s) 36, 63
TaqI TCGA 1 cut(s) 199
TasI AATT 3 cut(s) 101, 259, 345
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 21, 213
Tru9I TTAA 2 cut(s) 21, 213
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 169, 226
Tsp45I GTSAC 1 cut(s) 58
VneI GTGCAC 1 cut(s) 140
XapI RAATTY 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.