AT3G14180
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4706802 .. 4709176
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14180.1

Sequence Viewer

Length: 1332 bp
ATGGAGGACGATGAAGACATCCGATCTCAGGGTTCCGATTCACCTGATCCGTCTTCCTCCCCGCCGGCGGGACGAATCACGGTTACGGTGGCTTCGGCAGGTCCGCCTTCTTATTCTCTGACTCCTCCGGGTAATTCGTCGCAGAAGGATCCGGATGCGTTGGCTCTGGCGCTGCTTCCGATTCAGGCCAGCGGTGGAGGGAATAACAGCAGTGGGAGACCAACCGGCGGCGGCGGGAGGGAGGATTGTTGGAGCGAAGCAGCTACGGCTGTGTTGATTGATGCGTGGGGTGAGAGATACTTGGAGCTTAGCAGAGGGAATCTGAAGCAGAAGCACTGGAAAGAGGTGGCTGAGATTGTGAGCAGCAGAGAGGATTACGGTAAAATTCCCAAAACTGATATACAGTGTAAGAATAGGATCGATACGGTGAAGAAGAAGTATAAACAAGAGAAGGTGAGAATCGCTAACGGCGGTGGCCGTAGCAGATGGGTGTTCTTCGACAAGCTTGACCGTCTGATTGGATCAACGGCGAAGATCCCGACGGCAACTTCTGGAGTCAGCGGTCCTGTCGGAGGATTGCATAAGATTCCTATGGGTATTCCAATGGGAAGTCGTTCGAATCTGTACCATCAGCAAGCTAAGGCTGCAACACCGCCTTTCAATAATCTTGACCGGTTAATTGGAGCTACGGCTAGAGTCTCAGCTGCTTCTTTCGGTGGCAGTGGTGGAGGAGGCGGAGGAGGATCTGTCAATGTACCTATGGGAATTCCGATGAGTAGCCGTTCAGCTCCGTTTGGACAGCAAGGGAGGACTCTGCCACAGCAAGGTAGGACACTGCCACAGCAACAGCAGCAAGGGATGATGGTGAAAAGGTGTAGTGAGTCGAAACGCTGGCGTTTCAGGAAGAGGAACGCTTCTGATTCAGACTCGGAATCTGAAGCAGCAATGTCAGATGATTCCGGTGACAGTTTACCACCTCCTCCTCTGTCGAAGAGGATGAAGACGGAGGAGAAGAAGAAGCAAGATGGTGATGGAGTGGGGAACAAATGGAGGGAGCTGACTCGGGCAATCATGAGATTCGGTGAAGCTTATGAGCAAACAGAGAATGCGAAACTGCAACAGGTGGTTGAGATGGAGAAAGAGAGGATGAAGTTCTTGAAGGAGCTTGAGTTGCAGAGAATGCAGTTCTTTGTGAAGACTCAATTGGAGATATCACAACTTAAGCAGCAACATGGGAGGAGAATGGGAAACACCAGTAATGATCATCATCACAGCCGCAAGAACAACATCAATGCGATTGTCAACAACAACAACGATTTGGGTAATAACTAG

Protein Analysis

443

Amino Acids

48.31

Weight (kDa)

9.63

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 82 - 172 6.4e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14180
fragaria_vesca FvH4_6g35290
malus_domestica MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica Prupe.3G036000_v2.0.a1
pyrus_communis pycom09g09510
rosa_chinensis RchiOBHm_Chr2g0146731
rosa_laevigata RLG00000001092 RLG00000020217
rosa_multiflora Rmu_co8475067.1_g000001
rosa_roxburghii Rroxscaffold_2G00099960
rosa_rugosa Rorug02G0396200
rosa_samantha Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana Rw2G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 151
AclWI GGATC 7 cut(s) 41, 143, 156, 425, 529, 529, 751
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 2 cut(s) 384, 765
AcuI CTGAAG 2 cut(s) 344, 957
AfaI GTAC 2 cut(s) 626, 756
AfiI CCNNNNNNNGG 6 cut(s) 28, 67, 68, 227, 572, 824
AflII CTTAAG 1 cut(s) 1220
AgeI ACCGGT 1 cut(s) 672
AgsI TTSAA 2 cut(s) 661, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 1187, 1219
Alw26I GTCTC 2 cut(s) 211, 703
AlwI GGATC 7 cut(s) 41, 143, 156, 425, 529, 529, 751
Ama87I CYCGRG 1 cut(s) 1062
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 2 cut(s) 186, 475
ApeKI GCWGC 8 cut(s) 172, 260, 363, 644, 704, 850, 941, 1225
ApoI RAATTY 2 cut(s) 384, 765
AsiGI ACCGGT 1 cut(s) 672
Asp700I GAANNNNTTC 1 cut(s) 613
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 101, 563
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 8 cut(s) 33, 302, 439, 466, 877, 974, 1040, 1094
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 1062
AvaII GGWCC 2 cut(s) 101, 563
BamHI GGATCC 1 cut(s) 148
BbsI GAAGAC 4 cut(s) 21, 45, 1007, 1202
BbvI GCAGC 8 cut(s) 159, 272, 375, 631, 691, 862, 953, 1237
BccI CCATC 6 cut(s) 480, 636, 856, 1019, 1025, 1126
BceAI ACGGC 7 cut(s) 282, 462, 484, 543, 558, 705, 765
BclI TGATCA 1 cut(s) 1261
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 211, 703
BfaI CTAG 2 cut(s) 693, 1330
BfoI RGCGCY 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 1220
BfuAI ACCTGC 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 101, 563
BmeT110I CYCGRG 1 cut(s) 1062
BmgT120I GGNCC 2 cut(s) 101, 563
BmiI GGNNCC 2 cut(s) 34, 150
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 145, 271
BpiI GAAGAC 4 cut(s) 21, 45, 1007, 1202
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 1266
BsaI GGTCTC 1 cut(s) 211
BsaWI WCCGGW 3 cut(s) 151, 672, 959
BsaXI ACNNNNNCTCC 4 cut(s) 732, 762, 1154, 1184
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 67, 68, 227, 572, 824
Bse118I RCCGGY 3 cut(s) 64, 224, 672
Bse1I ACTGG 2 cut(s) 341, 1254
Bse3DI GCAATG 1 cut(s) 951
Bse8I GATNNNNATC 1 cut(s) 1266
BseAI TCCGGA 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 420
BseGI GGATG 5 cut(s) 18, 160, 864, 1002, 1152
BseJI GATNNNNATC 1 cut(s) 1266
BseLI CCNNNNNNNGG 6 cut(s) 28, 67, 68, 227, 572, 824
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 3 cut(s) 41, 342, 714
BseNI ACTGG 2 cut(s) 341, 1254
BseRI GAGGAG 7 cut(s) 114, 744, 753, 969, 972, 1022, 1252
BseXI GCAGC 8 cut(s) 159, 272, 375, 631, 691, 862, 953, 1237
BshFI GGCC 2 cut(s) 188, 477
BshTI ACCGGT 1 cut(s) 672
BshVI ATCGAT 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 6 cut(s) 65, 128, 152, 225, 673, 960
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 6 cut(s) 28, 67, 68, 227, 572, 824
BsmAI GTCTC 2 cut(s) 211, 703
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 2 cut(s) 1111, 1185
BsnI GGCC 2 cut(s) 188, 477
Bso31I GGTCTC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 1062
Bsp119I TTCGAA 1 cut(s) 617
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
Bsp1720I GCTNAGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 188, 477
BspCNI CTCAG 3 cut(s) 40, 343, 713
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 1 cut(s) 151
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 2 cut(s) 34, 150
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 7 cut(s) 41, 143, 156, 425, 529, 529, 751
BspT104I TTCGAA 1 cut(s) 617
BspTI CTTAAG 1 cut(s) 1220
BspTNI GGTCTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 3 cut(s) 64, 224, 672
BsrI ACTGG 2 cut(s) 341, 1254
BssAI RCCGGY 3 cut(s) 64, 224, 672
BssMI GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
Bst4CI ACNGT 7 cut(s) 82, 88, 380, 405, 427, 512, 968
Bst6I CTCTTC 2 cut(s) 899, 986
BstAFI CTTAAG 1 cut(s) 1220
BstAPI GCANNNNNTGC 1 cut(s) 1180
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 4 cut(s) 66, 190, 636, 893
BstDEI CTNAG 5 cut(s) 27, 308, 351, 639, 700
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 5 cut(s) 18, 160, 864, 1002, 1152
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 8 cut(s) 26, 49, 151, 420, 524, 537, 746, 1264
BstMAI GTCTC 2 cut(s) 211, 703
BstMBI GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
BstMWI GCNNNNNNNGC 5 cut(s) 266, 644, 850, 1171, 1180
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 8 cut(s) 159, 272, 375, 631, 691, 862, 953, 1237
BstV2I GAAGAC 4 cut(s) 21, 45, 1007, 1202
BstX2I RGATCY 3 cut(s) 148, 534, 743
BstYI RGATCY 3 cut(s) 148, 534, 743
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 188, 477
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 5 cut(s) 18, 160, 864, 1002, 1152
BtsI GCAGTG 3 cut(s) 217, 727, 833
BtsIMutI CAGTG 5 cut(s) 217, 334, 410, 727, 833
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 4 cut(s) 66, 190, 636, 893
CciI TCATGA 1 cut(s) 1071
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 3 cut(s) 64, 224, 672
Cfr13I GGNCC 2 cut(s) 101, 563
ClaI ATCGAT 1 cut(s) 420
Csp6I GTAC 2 cut(s) 625, 755
CspAI ACCGGT 1 cut(s) 672
CviAII CATG 2 cut(s) 1072, 1232
CviQI GTAC 2 cut(s) 625, 755
DdeI CTNAG 5 cut(s) 27, 308, 351, 639, 700
DpnI GATC 8 cut(s) 25, 48, 150, 419, 523, 536, 745, 1263
DpnII GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 899, 986
EarI CTCTTC 2 cut(s) 899, 986
EciI GGCGGA 2 cut(s) 93, 750
Eco31I GGTCTC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 1212
Eco47I GGWCC 2 cut(s) 101, 563
Eco57I CTGAAG 2 cut(s) 344, 957
Eco88I CYCGRG 1 cut(s) 1062
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 765
EcoRV GATATC 1 cut(s) 1212
FaeI CATG 2 cut(s) 1075, 1235
FaiI YATR 8 cut(s) 401, 441, 582, 593, 761, 1073, 1092, 1233
FaqI GGGAC 1 cut(s) 84
FatI CATG 2 cut(s) 1071, 1231
FauI CCCGC 3 cut(s) 61, 69, 227
FbaI TGATCA 1 cut(s) 1261
FokI GGATG 5 cut(s) 5, 167, 871, 1009, 1159
FspBI CTAG 2 cut(s) 693, 1330
GlaI GCGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 188, 477
HapII CCGG 6 cut(s) 65, 128, 152, 225, 673, 960
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 1075, 1235
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 2 cut(s) 503, 1086
HpaII CCGG 6 cut(s) 65, 128, 152, 225, 673, 960
HphI GGTGA 8 cut(s) 33, 302, 439, 466, 877, 974, 1040, 1094
Hpy166II GTNNAC 2 cut(s) 971, 1303
Hpy188III TCNNGA 7 cut(s) 152, 538, 552, 668, 901, 1072, 1156
Hpy8I GTNNAC 2 cut(s) 971, 1303
Hpy99I CGWCG 2 cut(s) 142, 544
HpyAV CCTTC 4 cut(s) 117, 139, 445, 1153
HpyCH4III ACNGT 7 cut(s) 82, 88, 380, 405, 427, 512, 968
HpyCH4V TGCA 5 cut(s) 580, 647, 1117, 1174, 1183
HpyF10VI GCNNNNNNNGC 5 cut(s) 266, 644, 850, 1171, 1180
HpyF3I CTNAG 5 cut(s) 27, 308, 351, 639, 700
Hsp92II CATG 2 cut(s) 1075, 1235
HspAI GCGC 1 cut(s) 170
Kpn2I TCCGGA 1 cut(s) 151
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 1261
Kzo9I GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
LmnI GCTCC 6 cut(s) 252, 304, 683, 793, 1054, 1162
Lsp1109I GCAGC 8 cut(s) 159, 272, 375, 631, 691, 862, 953, 1237
LweI GCATC 2 cut(s) 145, 271
MaeI CTAG 2 cut(s) 693, 1330
MaeIII GTNAC 2 cut(s) 82, 962
MalI GATC 8 cut(s) 25, 48, 150, 419, 523, 536, 745, 1263
MboI GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
MfeI CAATTG 1 cut(s) 1202
MflI RGATCY 3 cut(s) 148, 534, 743
MluCI AATT 5 cut(s) 133, 384, 678, 765, 1202
MlyI GAGTC 8 cut(s) 115, 564, 705, 805, 890, 920, 1054, 1192
MmeI TCCRAC 2 cut(s) 230, 550
MreI CGCCGGCG 1 cut(s) 64
MroI TCCGGA 1 cut(s) 151
MroNI GCCGGC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 613
MseI TTAA 2 cut(s) 677, 1221
MspA1I CMGCKG 3 cut(s) 192, 561, 704
MspCI CTTAAG 1 cut(s) 1220
MspI CCGG 6 cut(s) 65, 128, 152, 225, 673, 960
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 1202
Mva1269I GAATGC 2 cut(s) 1111, 1185
MwoI GCNNNNNNNGC 5 cut(s) 266, 644, 850, 1171, 1180
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 129
NdeII GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 2 cut(s) 1075, 1235
NlaIV GGNNCC 2 cut(s) 34, 150
NmuCI GTSAC 1 cut(s) 962
NspV TTCGAA 1 cut(s) 617
PagI TCATGA 1 cut(s) 1071
PctI GAATGC 2 cut(s) 1111, 1185
PdiI GCCGGC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 613
PinAI ACCGGT 1 cut(s) 672
PleI GAGTC 8 cut(s) 115, 563, 704, 805, 889, 920, 1054, 1192
PpsI GAGTC 8 cut(s) 115, 563, 704, 805, 889, 920, 1054, 1192
PspN4I GGNNCC 2 cut(s) 34, 150
PspPI GGNCC 2 cut(s) 101, 563
PsuI RGATCY 3 cut(s) 148, 534, 743
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 626, 756
RsaNI GTAC 2 cut(s) 625, 755
SaqAI TTAA 2 cut(s) 677, 1221
Sau3AI GATC 8 cut(s) 23, 46, 148, 417, 521, 534, 743, 1261
Sau96I GGNCC 2 cut(s) 101, 563
SchI GAGTC 8 cut(s) 115, 564, 705, 805, 890, 920, 1054, 1192
ScrFI CCNGG 1 cut(s) 129
SfaNI GCATC 2 cut(s) 145, 271
SfuI TTCGAA 1 cut(s) 617
SgrAI CRCCGGYG 1 cut(s) 64
SinI GGWCC 2 cut(s) 101, 563
SmlI CTYRAG 2 cut(s) 1166, 1220
SmoI CTYRAG 2 cut(s) 1166, 1220
Sse9I AATT 5 cut(s) 133, 384, 678, 765, 1202
SspMI CTAG 2 cut(s) 693, 1330
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 7 cut(s) 82, 88, 380, 405, 427, 512, 968
TaqI TCGA 5 cut(s) 420, 498, 617, 884, 989
TasI AATT 5 cut(s) 133, 384, 678, 765, 1202
TauI GCSGC 3 cut(s) 231, 234, 1278
Tru1I TTAA 2 cut(s) 677, 1221
Tru9I TTAA 2 cut(s) 677, 1221
TscAI CASTG 5 cut(s) 217, 341, 410, 727, 840
TseFI GTSAC 1 cut(s) 962
TseI GCWGC 8 cut(s) 172, 260, 363, 644, 704, 850, 941, 1225
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 3 cut(s) 27, 1013, 1163
TspGWI ACGGA 3 cut(s) 39, 780, 1019
TspRI CASTG 5 cut(s) 217, 341, 410, 727, 840
Vha464I CTTAAG 1 cut(s) 1220
VpaK11BI GGWCC 2 cut(s) 101, 563
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 2 cut(s) 384, 765
XmnI GAANNNNTTC 1 cut(s) 613
XspI CTAG 2 cut(s) 693, 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.