Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014614

Physical Location & Seq

Genomic Coordinates Reverse (-)

10294620 .. 10295238

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGACTATTATGTCAATTCCATTCCCCCACGGGATGCATACAGCCAATTCTCATACGTCACCTACCAAGCCGGCAGTCCAATGACGTCGGTGACGACCACTCCACCAATCACGCCGCTGATATCAAACCCCATCTCACCTCTCACTCTCTCTCCTCAGTTTTTTCCGTCAACCGAGAAAATGCAACCCAACAAAATTACAAAACGATCGATGGAGGAGGACGACGAGATGCATTTATCGGTGTCGACGGGGAGCGGATCCCCGACGTCGCCGAGGGCGAACGGTCGGATAACGGCGCTCATGGTGTTTGATGTCTCTAATTCAGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010029 GO:0010033 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

111

Amino Acids

12.07

Weight (kDa)

4.87

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14180
fragaria_vesca	FvH4_6g35290
malus_domestica	MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica	Prupe.3G036000_v2.0.a1
pyrus_communis	pycom09g09510
rosa_chinensis	RchiOBHm_Chr2g0146731
rosa_laevigata	RLG00000001092 RLG00000020217
rosa_multiflora	Rmu_co8475067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099960
rosa_rugosa	Rorug02G0396200
rosa_samantha	Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana	Rw2G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AatII	GACGTC	2 cut(s)	89, 269
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	2 cut(s)	116, 255
AclWI	GGATC	2 cut(s)	252, 265
AcyI	GRCGYC	2 cut(s)	86, 266
Alw26I	GTCTC	2 cut(s)	319, 320
AlwI	GGATC	2 cut(s)	252, 265
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	3 cut(s)	52, 103, 129
BamHI	GGATCC	1 cut(s)	257
BccI	CCATC	2 cut(s)	140, 205
BceAI	ACGGC	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	319, 320
BfoI	RGCGCY	1 cut(s)	299
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	2 cut(s)	25, 219
Bsa29I	ATCGAT	1 cut(s)	209
BsaHI	GRCGYC	2 cut(s)	86, 266
BsaJI	CCNNGG	2 cut(s)	29, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 136, 166
Bse118I	RCCGGY	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	29, 272
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	144, 230
Bsh1285I	CGRYCG	2 cut(s)	209, 286
BshVI	ATCGAT	1 cut(s)	209
BsiEI	CGRYCG	2 cut(s)	209, 286
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	319, 320
Bsp143I	GATC	2 cut(s)	206, 257
BspACI	CCGC	2 cut(s)	116, 255
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	252, 265
BsrBI	CCGCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	29, 272
BssMI	GATC	2 cut(s)	206, 257
BssNI	GRCGYC	2 cut(s)	86, 266
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	2 cut(s)	86, 266
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	40
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	209, 260
BstMAI	GTCTC	2 cut(s)	319, 320
BstMBI	GATC	2 cut(s)	206, 257
BstMCI	CGRYCG	2 cut(s)	209, 286
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	209
CviAII	CATG	2 cut(s)	301, 330
CviJI	RGCY	2 cut(s)	45, 71
CviKI_1	RGCY	2 cut(s)	45, 71
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	208, 259
DpnII	GATC	2 cut(s)	206, 257
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	40, 234
FaeI	CATG	2 cut(s)	304, 333
FaiI	YATR	5 cut(s)	12, 40, 55, 302, 331
FatI	CATG	2 cut(s)	300, 329
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	116
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	299
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	2 cut(s)	86, 266
Hin1II	CATG	2 cut(s)	304, 333
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HincII	GTYRAC	2 cut(s)	171, 246
HindII	GTYRAC	2 cut(s)	171, 246
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	52, 103, 129
Hpy166II	GTNNAC	2 cut(s)	171, 246
Hpy188I	TCNGA	2 cut(s)	288, 325
Hpy8I	GTNNAC	2 cut(s)	171, 246
Hpy99I	CGWCG	5 cut(s)	91, 227, 250, 268, 271
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	3 cut(s)	57, 86, 266
HpyCH4V	TGCA	3 cut(s)	38, 184, 232
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	3 cut(s)	57, 86, 266
Hsp92I	GRCGYC	2 cut(s)	86, 266
Hsp92II	CATG	2 cut(s)	304, 333
HspAI	GCGC	1 cut(s)	296
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	206, 257
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	1 cut(s)	85
LweI	GCATC	2 cut(s)	25, 219
MaeII	ACGT	3 cut(s)	57, 86, 266
MaeIII	GTNAC	2 cut(s)	58, 91
MalI	GATC	2 cut(s)	208, 259
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	2 cut(s)	206, 257
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	4 cut(s)	16, 47, 195, 319
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	5 cut(s)	150, 165, 208, 211, 267
Mph1103I	ATGCAT	2 cut(s)	40, 234
MroNI	GCCGGC	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	2 cut(s)	206, 257
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	304, 333
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	58, 91
NsiI	ATGCAT	2 cut(s)	40, 234
PcsI	WCGNNNNNNNCGW	2 cut(s)	92, 275
PdiI	GCCGGC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	117
Ple19I	CGATCG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	257
PvuI	CGATCG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	244
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	206, 257
SetI	ASST	5 cut(s)	60, 65, 89, 142, 269
SfaNI	GCATC	2 cut(s)	25, 219
Sse9I	AATT	4 cut(s)	16, 47, 195, 319
SsiI	CCGC	2 cut(s)	116, 255
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	3 cut(s)	60, 89, 269
TaqI	TCGA	2 cut(s)	209, 245
TasI	AATT	4 cut(s)	16, 47, 195, 319
TauI	GCSGC	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	58, 91
Tsp45I	GTSAC	2 cut(s)	58, 91
TspGWI	ACGGA	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	245
ZraI	GACGTC	2 cut(s)	87, 267
Zsp2I	ATGCAT	2 cut(s)	40, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.