Rh2DG474400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014614
Physical Location & Seq
Reverse (-)
68658840 .. 68659970
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG474400.1

Sequence Viewer

Length: 1131 bp
ATGGAGGAGGACGACGAGATGCATTCACCGGTGTCGGCGGGGAGCGGATCTCCGGCGTCGCCGAGGGCGAACGGTCGGATAACGGTGACGGTGGCGGTTCCGTCTCAGATACCGGCGGCGGCGCAAGAGTCGCCGCAGAACAACACGCTAACCCTAGCGCTGCCGTCGCAGGTCAGAAGCAGCGGCGGGAGGGAGGACTGCTGGAGCGAAAGCGCGACGGCGGTGCTGATCGAGGCGTGGGGGGAGAGGTACCTGGAGCTGAGCAGAGGGAACCTGAAGCAGAAGCACTGGAAGGAGGTGGCTGACATTGTGAGTAGCAGAGAGGACTATGGGAAAATCCCCAAAACTGATATCCAGTGCAAGAACAGAATCGACACTGTGAAGAAGAAGTATAAGTTGGAGAAATCCAAGATGATGGCCGGAGGTGGGCCGAGCAAGTGGCCCTTTTTCGAAAAGCTTGATCATTTGATTGGCGCCACTGCTAAGGGTACCCCTGGTTCTGCCTCTGGTGGTGGTTCAGTGCCGCCGGGTTTCTTGGCTAAGAACCATAAGATTCCGATGGGAATGCCGGTCGGGGTCCGAGGAGGAGGAGTTGGTCATTTTGTCCCCAAACACCAGCAGCAGCTGCAGCAGCTGCAGAAGGCAAATGCTAAGAAAAGGGATCCGGTGGAGTGGGATTCGGATTCTTCAAGGGAGGTCTCTCCGGTCTCTGCTGATAGCTTTCCGCCCCCTGTTTCTGAGCTGAAGAGGCCGAGGATGGCGGGGCGGGGGGCGAATACTGGTTTAGGGAGGGGGAGAGGAGGAGGAGGAGGAGGGGTTGGGAAAGAGATTAGAGGAAGAGTTGGGGGTGGAGAGAAGAAAGGTGGGTGGGGGAATTCAATGAGGGAATTGACGCAGGCAATGCTGAGGTTCGGGGAGGCTTATGAGCACGCCGAGACTGCAAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAAGAGTTGGAGTTGCAAAGAATGCAGTTTTTCATGAAGACCCAGCTGGAGATTTCGCAGCTCAAGCATGGTAGGAGGAATGGGAATGCGAGTAATCATCACCGCAGCAACAACAACAACAACAACAGCGATAGCAACTAG

Protein Analysis

376

Amino Acids

40.84

Weight (kDa)

9.78

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 66 - 156 1.1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14180
fragaria_vesca FvH4_6g35290
malus_domestica MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica Prupe.3G036000_v2.0.a1
pyrus_communis pycom09g09510
rosa_chinensis RchiOBHm_Chr2g0146731
rosa_laevigata RLG00000001092 RLG00000020217
rosa_multiflora Rmu_co8475067.1_g000001
rosa_roxburghii Rroxscaffold_2G00099960
rosa_rugosa Rorug02G0396200
rosa_samantha Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana Rw2G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 943
Acc36I ACCTGC 2 cut(s) 160, 943
Acc65I GGTACC 2 cut(s) 249, 488
AccB1I GGYRCC 3 cut(s) 249, 473, 488
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 1 cut(s) 215
AclWI GGATC 3 cut(s) 55, 656, 669
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 874
AcuI CTGAAG 2 cut(s) 296, 764
AcyI GRCGYC 2 cut(s) 56, 474
AfaI GTAC 2 cut(s) 251, 490
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 426
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 690, 879
AjnI CCWGG 2 cut(s) 252, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 9 cut(s) 259, 457, 625, 634, 720, 742, 946, 1036, 1051
AluI AGCT 9 cut(s) 259, 457, 625, 634, 720, 742, 946, 1036, 1051
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 4 cut(s) 108, 703, 712, 929
AlwI GGATC 3 cut(s) 55, 656, 669
AlwNI CAGNNNCTG 2 cut(s) 625, 634
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 4 cut(s) 417, 428, 440, 749
ApoI RAATTY 1 cut(s) 874
AsiGI ACCGGT 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 249, 488
AspLEI GCGC 4 cut(s) 124, 160, 215, 476
AspS9I GGNCC 3 cut(s) 428, 441, 577
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 18, 97, 1082
AsuII TTCGAA 1 cut(s) 450
AvaII GGWCC 1 cut(s) 577
BamHI GGATCC 1 cut(s) 661
BanI GGYRCC 3 cut(s) 249, 473, 488
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 1 cut(s) 930
BbvCI CCTCAGC 1 cut(s) 905
BccI CCATC 4 cut(s) 409, 553, 751, 958
BceAI ACGGC 2 cut(s) 148, 234
BcgI CGANNNNNNTGC 4 cut(s) 205, 239, 547, 581
BciT130I CCWGG 2 cut(s) 254, 495
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 108, 703, 712, 929
BfaI CTAG 2 cut(s) 155, 1129
BfmI CTRYAG 3 cut(s) 626, 635, 947
BfoI RGCGCY 2 cut(s) 161, 477
BfuAI ACCTGC 2 cut(s) 160, 943
BlpI GCTNAGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 254, 495, 528
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 428, 441, 577
BmiI GGNNCC 7 cut(s) 99, 251, 272, 475, 490, 578, 663
BmrFI CCNGG 3 cut(s) 254, 495, 528
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 1034
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 3 cut(s) 223, 275, 1058
Bpu10I CCTNAGC 2 cut(s) 483, 905
Bpu1102I GCTNAGC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 1037
BpuMI CCSGG 1 cut(s) 528
BsaHI GRCGYC 2 cut(s) 56, 474
BsaI GGTCTC 2 cut(s) 703, 712
BsaJI CCNNGG 4 cut(s) 62, 493, 580, 752
BsaWI WCCGGW 3 cut(s) 28, 664, 703
BsaXI ACNNNNNCTCC 4 cut(s) 576, 606, 801, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse118I RCCGGY 3 cut(s) 28, 112, 568
Bse1I ACTGG 3 cut(s) 293, 355, 784
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 2 cut(s) 254, 495
BseDI CCNNGG 4 cut(s) 62, 493, 580, 752
BseGI GGATG 2 cut(s) 762, 984
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 4 cut(s) 119, 251, 729, 896
BseNI ACTGG 3 cut(s) 293, 355, 784
BseRI GAGGAG 9 cut(s) 20, 597, 600, 603, 813, 816, 819, 822, 825
BseYI CCCAGC 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 2 cut(s) 76, 573
BshFI GGCC 4 cut(s) 419, 430, 442, 751
BshNI GGYRCC 3 cut(s) 249, 473, 488
BshTI ACCGGT 1 cut(s) 28
BsiEI CGRYCG 2 cut(s) 76, 573
BsiHKAI GWGCWC 1 cut(s) 930
BsiSI CCGG 8 cut(s) 29, 53, 113, 420, 527, 569, 665, 704
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 4 cut(s) 108, 703, 712, 929
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 590
BsmI GAATGC 4 cut(s) 22, 570, 1017, 1081
BsnI GGCC 4 cut(s) 419, 430, 442, 751
Bso31I GGTCTC 2 cut(s) 703, 712
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 930
Bsp143I GATC 4 cut(s) 47, 228, 460, 661
Bsp1720I GCTNAGC 1 cut(s) 260
BspANI GGCC 4 cut(s) 419, 430, 442, 751
BspCNI CTCAG 4 cut(s) 118, 252, 730, 897
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 1023
BspLI GGNNCC 7 cut(s) 99, 251, 272, 475, 490, 578, 663
BspMAI CTGCAG 3 cut(s) 630, 639, 951
BspMI ACCTGC 2 cut(s) 160, 943
BspPI GGATC 3 cut(s) 55, 656, 669
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 3 cut(s) 249, 473, 488
BspTNI GGTCTC 2 cut(s) 703, 712
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 3 cut(s) 28, 112, 568
BsrI ACTGG 3 cut(s) 293, 355, 784
BssAI RCCGGY 3 cut(s) 28, 112, 568
BssECI CCNNGG 4 cut(s) 62, 493, 580, 752
BssMI GATC 4 cut(s) 47, 228, 460, 661
BssNI GRCGYC 2 cut(s) 56, 474
Bst2UI CCWGG 2 cut(s) 254, 495
Bst4CI ACNGT 4 cut(s) 74, 85, 91, 379
Bst6I CTCTTC 2 cut(s) 740, 832
BstACI GRCGYC 2 cut(s) 56, 474
BstAPI GCANNNNNTGC 4 cut(s) 625, 634, 901, 1012
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 897, 930
BstDEI CTNAG 7 cut(s) 105, 260, 483, 540, 651, 738, 905
BstF5I GGATG 2 cut(s) 762, 984
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 2 cut(s) 161, 477
BstHHI GCGC 4 cut(s) 124, 160, 215, 476
BstKTI GATC 4 cut(s) 50, 231, 463, 664
BstMAI GTCTC 4 cut(s) 108, 703, 712, 929
BstMBI GATC 4 cut(s) 47, 228, 460, 661
BstMCI CGRYCG 2 cut(s) 76, 573
BstNI CCWGG 2 cut(s) 254, 495
BstSCI CCNGG 3 cut(s) 252, 493, 526
BstSFI CTRYAG 3 cut(s) 626, 635, 947
BstUI CGCG 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 1034
BstX2I RGATCY 2 cut(s) 47, 661
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 2 cut(s) 47, 661
BsuRI GGCC 4 cut(s) 419, 430, 442, 751
BtsCI GGATG 2 cut(s) 762, 984
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 5 cut(s) 286, 362, 375, 477, 525
BveI ACCTGC 2 cut(s) 160, 943
Cac8I GCNNGC 2 cut(s) 897, 930
CaiI CAGNNNCTG 2 cut(s) 625, 634
CciI TCATGA 1 cut(s) 1023
CfoI GCGC 4 cut(s) 124, 160, 215, 476
Cfr10I RCCGGY 3 cut(s) 28, 112, 568
Cfr13I GGNCC 3 cut(s) 428, 441, 577
CseI GACGC 2 cut(s) 45, 901
Csp6I GTAC 2 cut(s) 250, 489
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 2 cut(s) 1024, 1058
CviQI GTAC 2 cut(s) 250, 489
DdeI CTNAG 7 cut(s) 105, 260, 483, 540, 651, 738, 905
DinI GGCGCC 1 cut(s) 475
DpnI GATC 4 cut(s) 49, 230, 462, 663
DpnII GATC 4 cut(s) 47, 228, 460, 661
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 740, 832
EarI CTCTTC 2 cut(s) 740, 832
EciI GGCGGA 1 cut(s) 714
Eco31I GGTCTC 2 cut(s) 703, 712
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 577
Eco47III AGCGCT 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 296, 764
EcoRI GAATTC 1 cut(s) 874
EcoRII CCWGG 2 cut(s) 252, 493
EcoRV GATATC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 475
EheI GGCGCC 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 2 cut(s) 1027, 1061
FaiI YATR 6 cut(s) 330, 393, 549, 924, 1025, 1059
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 590
FatI CATG 2 cut(s) 1023, 1057
FauI CCCGC 4 cut(s) 31, 179, 754, 759
FbaI TGATCA 1 cut(s) 460
FokI GGATG 2 cut(s) 769, 991
FspBI CTAG 2 cut(s) 155, 1129
GlaI GCGC 4 cut(s) 123, 159, 214, 475
GsaI CCCAGC 1 cut(s) 1036
GsuI CTGGAG 3 cut(s) 223, 275, 1058
HaeII RGCGCY 2 cut(s) 161, 477
HaeIII GGCC 4 cut(s) 419, 430, 442, 751
HapII CCGG 8 cut(s) 29, 53, 113, 420, 527, 569, 665, 704
HgaI GACGC 2 cut(s) 45, 901
HhaI GCGC 4 cut(s) 124, 160, 215, 476
Hin1I GRCGYC 2 cut(s) 56, 474
Hin1II CATG 2 cut(s) 1027, 1061
Hin6I GCGC 4 cut(s) 122, 158, 213, 474
HinP1I GCGC 4 cut(s) 122, 158, 213, 474
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 5 cut(s) 128, 369, 553, 677, 683
HpaII CCGG 8 cut(s) 29, 53, 113, 420, 527, 569, 665, 704
HphI GGTGA 3 cut(s) 18, 97, 1082
Hpy188I TCNGA 7 cut(s) 78, 108, 176, 558, 581, 682, 739
Hpy188III TCNNGA 1 cut(s) 1024
Hpy99I CGWCG 4 cut(s) 17, 61, 169, 220
HpyAV CCTTC 2 cut(s) 286, 634
HpyCH4III ACNGT 4 cut(s) 74, 85, 91, 379
HpyCH4V TGCA 8 cut(s) 22, 360, 628, 637, 941, 949, 1006, 1015
HpyF3I CTNAG 7 cut(s) 105, 260, 483, 540, 651, 738, 905
Hsp92I GRCGYC 2 cut(s) 56, 474
Hsp92II CATG 2 cut(s) 1027, 1061
HspAI GCGC 4 cut(s) 122, 158, 213, 474
KasI GGCGCC 1 cut(s) 473
KpnI GGTACC 2 cut(s) 253, 492
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 47, 228, 460, 661
LmnI GCTCC 3 cut(s) 42, 204, 256
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 155, 1129
MaeIII GTNAC 1 cut(s) 85
MalI GATC 4 cut(s) 49, 230, 462, 663
MbiI CCGCTC 1 cut(s) 45
MboI GATC 4 cut(s) 47, 228, 460, 661
MboII GAAGA 7 cut(s) 394, 397, 678, 757, 849, 868, 1039
MflI RGATCY 2 cut(s) 47, 661
MhlI GDGCHC 1 cut(s) 930
MluCI AATT 2 cut(s) 874, 887
Mly113I GGCGCC 1 cut(s) 474
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 3 cut(s) 56, 378, 978
Mph1103I ATGCAT 1 cut(s) 24
MspA1I CMGCKG 4 cut(s) 183, 625, 634, 1036
MspI CCGG 8 cut(s) 29, 53, 113, 420, 527, 569, 665, 704
MspR9I CCNGG 3 cut(s) 254, 495, 528
Mva1269I GAATGC 4 cut(s) 22, 570, 1017, 1081
MvaI CCWGG 2 cut(s) 254, 495
MvnI CGCG 1 cut(s) 215
NarI GGCGCC 1 cut(s) 474
NciI CCSGG 1 cut(s) 528
NdeII GATC 4 cut(s) 47, 228, 460, 661
NlaIII CATG 2 cut(s) 1027, 1061
NlaIV GGNNCC 7 cut(s) 99, 251, 272, 475, 490, 578, 663
NmeAIII GCCGAG 4 cut(s) 87, 456, 777, 958
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 24
NspV TTCGAA 1 cut(s) 450
PagI TCATGA 1 cut(s) 1023
PaqCI CACCTGC 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 4 cut(s) 22, 570, 1017, 1081
PfeI GAWTC 4 cut(s) 369, 553, 677, 683
PinAI ACCGGT 1 cut(s) 28
PleI GAGTC 1 cut(s) 136
PluTI GGCGCC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 252, 493
PspFI CCCAGC 1 cut(s) 1032
PspGI CCWGG 2 cut(s) 252, 493
PspN4I GGNNCC 7 cut(s) 99, 251, 272, 475, 490, 578, 663
PspPI GGNCC 3 cut(s) 428, 441, 577
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PstI CTGCAG 3 cut(s) 630, 639, 951
PstNI CAGNNNCTG 2 cut(s) 625, 634
PsuI RGATCY 2 cut(s) 47, 661
PvuII CAGCTG 3 cut(s) 625, 634, 1036
RsaI GTAC 2 cut(s) 251, 490
RsaNI GTAC 2 cut(s) 250, 489
Sau3AI GATC 4 cut(s) 47, 228, 460, 661
Sau96I GGNCC 3 cut(s) 428, 441, 577
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 254, 495, 528
SduI GDGCHC 1 cut(s) 930
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 3 cut(s) 626, 635, 947
SfoI GGCGCC 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 450
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
Sse9I AATT 2 cut(s) 874, 887
SspDI GGCGCC 1 cut(s) 473
SspMI CTAG 2 cut(s) 155, 1129
StyD4I CCNGG 3 cut(s) 252, 493, 526
TaaI ACNGT 4 cut(s) 74, 85, 91, 379
TaqI TCGA 3 cut(s) 231, 372, 450
TasI AATT 2 cut(s) 874, 887
TauI GCSGC 5 cut(s) 119, 122, 136, 186, 526
TfiI GAWTC 4 cut(s) 369, 553, 677, 683
TscAI CASTG 5 cut(s) 293, 362, 382, 484, 525
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 995, 1012, 1040
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 5 cut(s) 293, 362, 382, 484, 525
VpaK11BI GGWCC 1 cut(s) 577
XapI RAATTY 1 cut(s) 874
XspI CTAG 2 cut(s) 155, 1129
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.