MD09G1176900.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
15129099 .. 15130151
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1176900.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGGAAGAGGACGACGAGATCCTGTCACCGGCGTCTGGAGGAAGCCGATCTCCGACGTCGCAGAGGCAGAACGGTCGGATTACGGTGACGGTGGCGGTGCCGCCGGCGCAGATTCCAGCACCGACGCCGTCTCAGAACAAAACGCTGACCCTAGCTCTCCCGTCGTCGGGTAAGCAGCAAGGGCGGAGTAGCGGCGGAGGAAGGGAAGATTGCTGGAGCGAGGGGGCGACGGCGGTGCTGATCGAGGCGTGGGGGGAGAGGTACTTGGAGCTGAGCAGGGGGAATTTGAAGCAGAAGCACTGGAAGGAGGTGGCAGACGTCGTGAGTAGCAGGGAGGAGTACGGTAAGATTCCCAAGACTGACATACAGTGTAAGAATAGGATTGATACTGTGAAGAAGAAATATAAGCTCGAAAAATCGAAGATTGGGGCTGGAGGAGGACCCAGCAAGTGGCCCTTTTTTGAGAGGCTCGATCATTTGGTTGGTCCCTCTGGTGCTAAGGTGGGTCCTGGGTCTGGTGGTGGTGGTAGTGGTAGTGGTGAGTTTTCGGGCCATAGCCAGAAAATTCCGGTCGGGGTTCGACATAGCCAGTTTCTGGGGCATAGGGCGAAACGGGAGGGAAAGATTAGACAAAAGGATTTGGTGGAATGGGACTCAGATGAGTCGCGGGAGCTGTCGCCTTTTTCGATTGATAATGAGGTTTTCGAGCGGAAGAGGAGGAGGACTGCCAATGTCAATGCCAATGTGGGGAAGGGGGTAGGGGGTGGATTAAAGCCTTGTGCGGTGGGTAGAGAGAAAGAAGGAGGAGGCGGAGGGTGGGGGAGCTCGGTGAGGGAATTGACTCGGGCGATATTGAAGTTTGGGGAGGCTTATGAGCACGCAGAAACAGCGAAGCTGCAGCAGGTGGTGGAGATGGAAAAGCAGAGGATGAAGTTTGCCAAGGAGTTGGAGTTGCAGAGGCTGCAGTTTTTCATGAAGACACAGGTGGAGATTTCTCAGCTGAAGAGCGGAAGTGGAAGAAAAAGCGGGGTTAATGGGGGTCGGGAATGCTAG

Protein Analysis

351

Amino Acids

38.06

Weight (kDa)

9.62

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 70 - 160 2e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14180
fragaria_vesca FvH4_6g35290
malus_domestica MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica Prupe.3G036000_v2.0.a1
pyrus_communis pycom09g09510
rosa_chinensis RchiOBHm_Chr2g0146731
rosa_laevigata RLG00000001092 RLG00000020217
rosa_multiflora Rmu_co8475067.1_g000001
rosa_roxburghii Rroxscaffold_2G00099960
rosa_rugosa Rorug02G0396200
rosa_samantha Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana Rw2G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
AatII GACGTC 2 cut(s) 59, 321
Acc36I ACCTGC 1 cut(s) 892
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 2 cut(s) 450, 595
AccBSI CCGCTC 2 cut(s) 709, 1008
AccII CGCG 1 cut(s) 667
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 283, 564
AcuI CTGAAG 1 cut(s) 1022
AcyI GRCGYC 4 cut(s) 32, 56, 125, 318
AfaI GTAC 2 cut(s) 263, 341
AfiI CCNNNNNNNGG 8 cut(s) 28, 35, 166, 167, 450, 515, 595, 747
AgsI TTSAA 2 cut(s) 289, 856
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 7 cut(s) 155, 271, 409, 673, 825, 895, 1000
AluI AGCT 7 cut(s) 155, 271, 409, 673, 825, 895, 1000
Alw21I GWGCWC 2 cut(s) 827, 879
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 2 cut(s) 595, 961
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 2 cut(s) 452, 550
ApeKI GCWGC 4 cut(s) 175, 895, 898, 961
ApoI RAATTY 2 cut(s) 283, 564
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 5 cut(s) 440, 453, 485, 506, 550
AsuHPI GGTGA 4 cut(s) 18, 97, 551, 841
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 3 cut(s) 440, 485, 506
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 983
Bbv12I GWGCWC 2 cut(s) 827, 879
BbvI GCAGC 4 cut(s) 187, 882, 910, 948
BccI CCATC 1 cut(s) 907
BceAI ACGGC 2 cut(s) 112, 246
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 217, 251
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 152, 1051
BfmI CTRYAG 2 cut(s) 896, 962
BfuAI ACCTGC 1 cut(s) 892
BisI GCNGC 6 cut(s) 101, 176, 193, 896, 899, 962
BlpI GCTNAGC 1 cut(s) 272
BlsI GCNGC 6 cut(s) 102, 177, 194, 897, 900, 963
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 3 cut(s) 440, 485, 506
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 5 cut(s) 440, 453, 485, 506, 550
BmiI GGNNCC 4 cut(s) 99, 442, 487, 507
BmrFI CCNGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 983
BpmI CTGGAG 3 cut(s) 57, 235, 453
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 272
BsaHI GRCGYC 4 cut(s) 32, 56, 125, 318
BsaJI CCNNGG 2 cut(s) 509, 939
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 935, 965
Bsc4I CCNNNNNNNGG 8 cut(s) 28, 35, 166, 167, 450, 515, 595, 747
Bse118I RCCGGY 2 cut(s) 28, 103
Bse1I ACTGG 2 cut(s) 305, 589
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 509, 939
BseGI GGATG 1 cut(s) 933
BseLI CCNNNNNNNGG 8 cut(s) 28, 35, 166, 167, 450, 515, 595, 747
BseMII CTCAG 4 cut(s) 146, 263, 669, 1010
BseNI ACTGG 2 cut(s) 305, 589
BseRI GAGGAG 5 cut(s) 350, 450, 730, 733, 819
BseXI GCAGC 4 cut(s) 187, 882, 910, 948
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 667
Bsh1285I CGRYCG 2 cut(s) 76, 573
BshFI GGCC 2 cut(s) 454, 552
BshNI GGYRCC 1 cut(s) 97
BsiEI CGRYCG 2 cut(s) 76, 573
BsiHKAI GWGCWC 2 cut(s) 827, 879
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 3 cut(s) 29, 104, 569
BslFI GGGAC 2 cut(s) 471, 665
BslI CCNNNNNNNGG 8 cut(s) 28, 35, 166, 167, 450, 515, 595, 747
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 471, 665
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 2 cut(s) 454, 552
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 827, 879
Bsp143I GATC 4 cut(s) 18, 47, 240, 472
Bsp1720I GCTNAGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 454, 552
BspCNI CTCAG 4 cut(s) 145, 264, 668, 1009
BspFNI CGCG 1 cut(s) 667
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 4 cut(s) 99, 442, 487, 507
BspMAI CTGCAG 2 cut(s) 900, 966
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 998
BspT107I GGYRCC 1 cut(s) 97
BsrBI CCGCTC 2 cut(s) 709, 1008
BsrFI RCCGGY 2 cut(s) 28, 103
BsrI ACTGG 2 cut(s) 305, 589
BssAI RCCGGY 2 cut(s) 28, 103
BssECI CCNNGG 2 cut(s) 509, 939
BssMI GATC 4 cut(s) 18, 47, 240, 472
BssNI GRCGYC 4 cut(s) 32, 56, 125, 318
BssT1I CCWWGG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 6 cut(s) 74, 85, 91, 344, 369, 391
Bst6I CTCTTC 2 cut(s) 707, 998
BstACI GRCGYC 4 cut(s) 32, 56, 125, 318
BstAPI GCANNNNNTGC 1 cut(s) 961
BstC8I GCNNGC 2 cut(s) 105, 879
BstDEI CTNAG 5 cut(s) 132, 272, 498, 655, 996
BstF5I GGATG 1 cut(s) 933
BstFNI CGCG 1 cut(s) 667
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 4 cut(s) 21, 50, 243, 475
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 18, 47, 240, 472
BstMCI CGRYCG 2 cut(s) 76, 573
BstMWI GCNNNNNNNGC 4 cut(s) 106, 181, 887, 961
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 2 cut(s) 896, 962
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 4 cut(s) 187, 882, 910, 948
BstV2I GAAGAC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 946
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 2 cut(s) 454, 552
BtsCI GGATG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 298, 374
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 2 cut(s) 105, 879
CaiI CAGNNNCTG 2 cut(s) 595, 961
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 2 cut(s) 28, 103
Cfr13I GGNCC 5 cut(s) 440, 453, 485, 506, 550
CseI GACGC 2 cut(s) 21, 133
Csp6I GTAC 2 cut(s) 262, 340
CviAII CATG 1 cut(s) 973
CviQI GTAC 2 cut(s) 262, 340
DdeI CTNAG 5 cut(s) 132, 272, 498, 655, 996
DpnI GATC 4 cut(s) 20, 49, 242, 474
DpnII GATC 4 cut(s) 18, 47, 240, 472
Eam1104I CTCTTC 2 cut(s) 707, 998
EarI CTCTTC 2 cut(s) 707, 998
EciI GGCGGA 3 cut(s) 199, 210, 825
Ecl136II GAGCTC 1 cut(s) 825
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 1 cut(s) 827
Eco47I GGWCC 3 cut(s) 440, 485, 506
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 1022
Eco88I CYCGRG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 825
EcoO109I RGGNCCY 2 cut(s) 440, 506
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 976
FaiI YATR 7 cut(s) 365, 405, 555, 585, 603, 873, 974
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 2 cut(s) 471, 665
FatI CATG 1 cut(s) 972
FauI CCCGC 2 cut(s) 660, 1019
Fnu4HI GCNGC 6 cut(s) 101, 176, 193, 896, 899, 962
FokI GGATG 1 cut(s) 940
FriOI GRGCYC 1 cut(s) 827
Fsp4HI GCNGC 6 cut(s) 101, 176, 193, 896, 899, 962
FspBI CTAG 2 cut(s) 152, 1051
GlaI GCGC 1 cut(s) 108
GluI GCNGC 6 cut(s) 101, 176, 193, 896, 899, 962
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 3 cut(s) 57, 235, 453
HaeIII GGCC 2 cut(s) 454, 552
HapII CCGG 3 cut(s) 29, 104, 569
HgaI GACGC 2 cut(s) 21, 133
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 4 cut(s) 32, 56, 125, 318
Hin1II CATG 1 cut(s) 976
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 5 cut(s) 112, 349, 653, 662, 841
HpaII CCGG 3 cut(s) 29, 104, 569
HphI GGTGA 4 cut(s) 18, 97, 551, 841
Hpy188I TCNGA 4 cut(s) 54, 78, 135, 658
Hpy188III TCNNGA 4 cut(s) 36, 322, 973, 1043
Hpy99I CGWCG 8 cut(s) 17, 58, 61, 127, 166, 169, 232, 323
HpyAV CCTTC 4 cut(s) 195, 298, 745, 794
HpyCH4III ACNGT 6 cut(s) 74, 85, 91, 344, 369, 391
HpyCH4IV ACGT 2 cut(s) 56, 318
HpyCH4V TGCA 3 cut(s) 898, 955, 964
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 181, 887, 961
HpyF3I CTNAG 5 cut(s) 132, 272, 498, 655, 996
HpySE526I ACGT 2 cut(s) 56, 318
Hsp92I GRCGYC 4 cut(s) 32, 56, 125, 318
Hsp92II CATG 1 cut(s) 976
HspAI GCGC 1 cut(s) 107
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Kzo9I GATC 4 cut(s) 18, 47, 240, 472
LguI GCTCTTC 1 cut(s) 998
LmnI GCTCC 4 cut(s) 216, 268, 670, 822
Lsp1109I GCAGC 4 cut(s) 187, 882, 910, 948
MaeI CTAG 2 cut(s) 152, 1051
MaeII ACGT 2 cut(s) 56, 318
MaeIII GTNAC 2 cut(s) 24, 85
MalI GATC 4 cut(s) 20, 49, 242, 474
MbiI CCGCTC 2 cut(s) 709, 1008
MboI GATC 4 cut(s) 18, 47, 240, 472
MboII GAAGA 9 cut(s) 17, 218, 406, 409, 433, 724, 988, 1015, 1029
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 827, 879
MluCI AATT 3 cut(s) 283, 564, 836
MlyI GAGTC 3 cut(s) 647, 671, 835
MmeI TCCRAC 3 cut(s) 56, 77, 927
MreI CGCCGGCG 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 103
MseI TTAA 2 cut(s) 770, 1032
MspA1I CMGCKG 1 cut(s) 1000
MspI CCGG 3 cut(s) 29, 104, 569
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 4 cut(s) 106, 181, 887, 961
NaeI GCCGGC 1 cut(s) 105
NdeII GATC 4 cut(s) 18, 47, 240, 472
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 976
NlaIV GGNNCC 4 cut(s) 99, 442, 487, 507
NmuCI GTSAC 2 cut(s) 24, 85
PagI TCATGA 1 cut(s) 972
PaqCI CACCTGC 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 998
PcsI WCGNNNNNNNCGW 1 cut(s) 683
PctI GAATGC 1 cut(s) 1052
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 112, 349
PflFI GACNNNGTC 1 cut(s) 127
PflMI CCANNNNNTGG 2 cut(s) 450, 595
PkrI GCNGC 6 cut(s) 102, 177, 194, 897, 900, 963
PleI GAGTC 3 cut(s) 647, 670, 835
PpsI GAGTC 3 cut(s) 647, 670, 835
PpuMI RGGWCCY 2 cut(s) 440, 506
Psp124BI GAGCTC 1 cut(s) 827
Psp5II RGGWCCY 2 cut(s) 440, 506
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 4 cut(s) 99, 442, 487, 507
PspPI GGNCC 5 cut(s) 440, 453, 485, 506, 550
PspPPI RGGWCCY 2 cut(s) 440, 506
PstI CTGCAG 2 cut(s) 900, 966
PstNI CAGNNNCTG 2 cut(s) 595, 961
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 2 cut(s) 263, 341
RsaNI GTAC 2 cut(s) 262, 340
SacI GAGCTC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 998
SaqAI TTAA 2 cut(s) 770, 1032
SatI GCNGC 6 cut(s) 101, 176, 193, 896, 899, 962
Sau3AI GATC 4 cut(s) 18, 47, 240, 472
Sau96I GGNCC 5 cut(s) 440, 453, 485, 506, 550
SchI GAGTC 3 cut(s) 647, 671, 835
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 2 cut(s) 827, 879
SfcI CTRYAG 2 cut(s) 896, 962
SgrAI CRCCGGYG 2 cut(s) 28, 103
SinI GGWCC 3 cut(s) 440, 485, 506
Sse9I AATT 3 cut(s) 283, 564, 836
SspMI CTAG 2 cut(s) 152, 1051
SstI GAGCTC 1 cut(s) 827
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 6 cut(s) 74, 85, 91, 344, 369, 391
TaiI ACGT 2 cut(s) 59, 321
TaqI TCGA 7 cut(s) 243, 411, 419, 471, 580, 686, 705
TasI AATT 3 cut(s) 283, 564, 836
TauI GCSGC 2 cut(s) 103, 195
TfiI GAWTC 2 cut(s) 112, 349
Tru1I TTAA 2 cut(s) 770, 1032
Tru9I TTAA 2 cut(s) 770, 1032
TscAI CASTG 2 cut(s) 305, 374
TseFI GTSAC 2 cut(s) 24, 85
TseI GCWGC 4 cut(s) 175, 895, 898, 961
Tsp45I GTSAC 2 cut(s) 24, 85
TspDTI ATGAA 3 cut(s) 944, 961, 989
TspRI CASTG 2 cut(s) 305, 374
Tth111I GACNNNGTC 1 cut(s) 127
Van91I CCANNNNNTGG 2 cut(s) 450, 595
VpaK11BI GGWCC 3 cut(s) 440, 485, 506
XapI RAATTY 2 cut(s) 283, 564
XspI CTAG 2 cut(s) 152, 1051
ZraI GACGTC 2 cut(s) 57, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.