RchiOBHm_Chr2g0146731
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
64351612 .. 64355360
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51644

Sequence Viewer

Length: 1056 bp
ATGGAGGAGGACGACGAGATGCATTCACCGGTGTCGGCGGGGAGCGGATCTCCGGCGTCGCCGAGGGCGAACGGTCGGATAACGGTGACGGTGGCGGTTCCGTCTCAGATACCGGCGGCGGCGCAAGAGTCGCCGCAGAACAACACGCTAACCCTAGCGCTGCCGTCGCAGGTCAGAAGCAGCGGCGGGAGGGAGGACTGCTGGAGCGAAAGCGCGACGGCGGTGCTGATCGAGGCGTGGGGGAGAGAGGACTATGGGAAAATCCCCAAAACTGATATCCAGTGCAAGAACAGAATCGACACTGTGAAGAAGAAGTATAAGTTGGAGAAATCCAAGATGATGGCCGGAGGTGGGCCGAGCAAGTGGCCCTTTTTCGAAAAGCTTGATCATTTGATTGGCGCCACTGCTAAGGGTACCCCTGGTTCTGCCTCTGGTGGTGGTTCAGTGCCGCCGGGTTTCTTGGCTAAGAACCATAAGATTCCGATGGGAATGCCGGTCGGGGTCCGAGGAGGAGGAGTTGGTCATTTTGTCCCCAAACACCAGCAGCAGCTGCAGCAGCTGCAGAAGGCAAATGCTAAGAAAAGGGATCCGGTGGAGTGGGATTCGGATTCTTCAAGGGAGGTCTCTCCGGTCTCTGCTGATAGCTTTCCGCCCCCTGTTTCTGAGCTGAAGAGGCCGAGGATGGCGGGGCGGGGGGCGAATACTGGTTTAGGGAGGGGGAGAGGAGGAGGAGGAGGAGGGGTTGGGAAAGAGATTAGAGGAAGAGTTGGGGGTGGAGAGAAGAAAGGTGGGTGGGGGAATTCAATGAGGGAATTGACGCAGGCAATGCTGAGGTTCGGGGAGGCTTATGAGCACGCCGAGACTGCAAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAAGAGTTGGAGTTGCAAAGAATGCAGTTTTTCATGAAGACCCAGCTGGAGATTTCGCAGCTCAAGCATGGTAGGAGGAATGGGAATGCGAGTAATCATCACCGCAGCAACAACAACAACAACAACAGCGATAGCAACTAG

Protein Analysis

351

Amino Acids

37.87

Weight (kDa)

9.81

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 88 - 131 1.2e-08 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14180
fragaria_vesca FvH4_6g35290
malus_domestica MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica Prupe.3G036000_v2.0.a1
pyrus_communis pycom09g09510
rosa_chinensis RchiOBHm_Chr2g0146731
rosa_laevigata RLG00000001092 RLG00000020217
rosa_multiflora Rmu_co8475067.1_g000001
rosa_roxburghii Rroxscaffold_2G00099960
rosa_rugosa Rorug02G0396200
rosa_samantha Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana Rw2G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 868
Acc36I ACCTGC 2 cut(s) 160, 868
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 2 cut(s) 398, 413
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 1 cut(s) 215
AclWI GGATC 3 cut(s) 55, 581, 594
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 56, 399
AfaI GTAC 1 cut(s) 415
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 615, 804
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 8 cut(s) 382, 550, 559, 645, 667, 871, 961, 976
AluI AGCT 8 cut(s) 382, 550, 559, 645, 667, 871, 961, 976
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 4 cut(s) 108, 628, 637, 854
AlwI GGATC 3 cut(s) 55, 581, 594
AlwNI CAGNNNCTG 2 cut(s) 550, 559
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 4 cut(s) 342, 353, 365, 674
ApoI RAATTY 1 cut(s) 799
AsiGI ACCGGT 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 4 cut(s) 124, 160, 215, 401
AspS9I GGNCC 3 cut(s) 353, 366, 502
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 18, 97, 1007
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 1 cut(s) 502
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 2 cut(s) 398, 413
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 855
BbvCI CCTCAGC 1 cut(s) 830
BccI CCATC 4 cut(s) 334, 478, 676, 883
BceAI ACGGC 2 cut(s) 148, 234
BcgI CGANNNNNNTGC 4 cut(s) 205, 239, 472, 506
BciT130I CCWGG 1 cut(s) 420
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 4 cut(s) 108, 628, 637, 854
BfaI CTAG 2 cut(s) 155, 1054
BfmI CTRYAG 3 cut(s) 551, 560, 872
BfoI RGCGCY 2 cut(s) 161, 402
BfuAI ACCTGC 2 cut(s) 160, 868
Bme1390I CCNGG 2 cut(s) 420, 453
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 3 cut(s) 353, 366, 502
BmiI GGNNCC 5 cut(s) 99, 400, 415, 503, 588
BmrFI CCNGG 2 cut(s) 420, 453
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 959
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 2 cut(s) 223, 983
Bpu10I CCTNAGC 2 cut(s) 408, 830
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 453
BsaHI GRCGYC 2 cut(s) 56, 399
BsaI GGTCTC 2 cut(s) 628, 637
BsaJI CCNNGG 4 cut(s) 62, 418, 505, 677
BsaWI WCCGGW 3 cut(s) 28, 589, 628
BsaXI ACNNNNNCTCC 4 cut(s) 501, 531, 726, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 3 cut(s) 28, 112, 493
Bse1I ACTGG 2 cut(s) 280, 709
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 4 cut(s) 62, 418, 505, 677
BseGI GGATG 2 cut(s) 687, 909
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 3 cut(s) 119, 654, 821
BseNI ACTGG 2 cut(s) 280, 709
BseRI GAGGAG 9 cut(s) 20, 522, 525, 528, 738, 741, 744, 747, 750
BseYI CCCAGC 1 cut(s) 957
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 2 cut(s) 76, 498
BshFI GGCC 4 cut(s) 344, 355, 367, 676
BshNI GGYRCC 2 cut(s) 398, 413
BshTI ACCGGT 1 cut(s) 28
BsiEI CGRYCG 2 cut(s) 76, 498
BsiHKAI GWGCWC 1 cut(s) 855
BsiSI CCGG 8 cut(s) 29, 53, 113, 345, 452, 494, 590, 629
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 4 cut(s) 108, 628, 637, 854
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 4 cut(s) 22, 495, 942, 1006
BsnI GGCC 4 cut(s) 344, 355, 367, 676
Bso31I GGTCTC 2 cut(s) 628, 637
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 4 cut(s) 47, 228, 385, 586
BspANI GGCC 4 cut(s) 344, 355, 367, 676
BspCNI CTCAG 3 cut(s) 118, 655, 822
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 5 cut(s) 99, 400, 415, 503, 588
BspMAI CTGCAG 3 cut(s) 555, 564, 876
BspMI ACCTGC 2 cut(s) 160, 868
BspPI GGATC 3 cut(s) 55, 581, 594
BspT104I TTCGAA 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 398, 413
BspTNI GGTCTC 2 cut(s) 628, 637
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 3 cut(s) 28, 112, 493
BsrI ACTGG 2 cut(s) 280, 709
BssAI RCCGGY 3 cut(s) 28, 112, 493
BssECI CCNNGG 4 cut(s) 62, 418, 505, 677
BssMI GATC 4 cut(s) 47, 228, 385, 586
BssNI GRCGYC 2 cut(s) 56, 399
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 4 cut(s) 74, 85, 91, 304
Bst6I CTCTTC 2 cut(s) 665, 757
BstACI GRCGYC 2 cut(s) 56, 399
BstAPI GCANNNNNTGC 4 cut(s) 550, 559, 826, 937
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 822, 855
BstDEI CTNAG 6 cut(s) 105, 408, 465, 576, 663, 830
BstF5I GGATG 2 cut(s) 687, 909
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 2 cut(s) 161, 402
BstHHI GCGC 4 cut(s) 124, 160, 215, 401
BstKTI GATC 4 cut(s) 50, 231, 388, 589
BstMAI GTCTC 4 cut(s) 108, 628, 637, 854
BstMBI GATC 4 cut(s) 47, 228, 385, 586
BstMCI CGRYCG 2 cut(s) 76, 498
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 418, 451
BstSFI CTRYAG 3 cut(s) 551, 560, 872
BstUI CGCG 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 959
BstX2I RGATCY 2 cut(s) 47, 586
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 2 cut(s) 47, 586
BsuRI GGCC 4 cut(s) 344, 355, 367, 676
BtsCI GGATG 2 cut(s) 687, 909
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 4 cut(s) 287, 300, 402, 450
BveI ACCTGC 2 cut(s) 160, 868
Cac8I GCNNGC 2 cut(s) 822, 855
CaiI CAGNNNCTG 2 cut(s) 550, 559
CciI TCATGA 1 cut(s) 948
CfoI GCGC 4 cut(s) 124, 160, 215, 401
Cfr10I RCCGGY 3 cut(s) 28, 112, 493
Cfr13I GGNCC 3 cut(s) 353, 366, 502
CseI GACGC 2 cut(s) 45, 826
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 2 cut(s) 949, 983
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 6 cut(s) 105, 408, 465, 576, 663, 830
DinI GGCGCC 1 cut(s) 400
DpnI GATC 4 cut(s) 49, 230, 387, 588
DpnII GATC 4 cut(s) 47, 228, 385, 586
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 665, 757
EarI CTCTTC 2 cut(s) 665, 757
EciI GGCGGA 1 cut(s) 639
Eco31I GGTCTC 2 cut(s) 628, 637
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 502
Eco47III AGCGCT 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 400
EheI GGCGCC 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 2 cut(s) 952, 986
FaiI YATR 6 cut(s) 255, 318, 474, 849, 950, 984
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 515
FatI CATG 2 cut(s) 948, 982
FauI CCCGC 4 cut(s) 31, 179, 679, 684
FbaI TGATCA 1 cut(s) 385
FokI GGATG 2 cut(s) 694, 916
FspBI CTAG 2 cut(s) 155, 1054
GlaI GCGC 4 cut(s) 123, 159, 214, 400
GsaI CCCAGC 1 cut(s) 961
GsuI CTGGAG 2 cut(s) 223, 983
HaeII RGCGCY 2 cut(s) 161, 402
HaeIII GGCC 4 cut(s) 344, 355, 367, 676
HapII CCGG 8 cut(s) 29, 53, 113, 345, 452, 494, 590, 629
HgaI GACGC 2 cut(s) 45, 826
HhaI GCGC 4 cut(s) 124, 160, 215, 401
Hin1I GRCGYC 2 cut(s) 56, 399
Hin1II CATG 2 cut(s) 952, 986
Hin6I GCGC 4 cut(s) 122, 158, 213, 399
HinP1I GCGC 4 cut(s) 122, 158, 213, 399
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 5 cut(s) 128, 294, 478, 602, 608
HpaII CCGG 8 cut(s) 29, 53, 113, 345, 452, 494, 590, 629
HphI GGTGA 3 cut(s) 18, 97, 1007
Hpy188I TCNGA 7 cut(s) 78, 108, 176, 483, 506, 607, 664
Hpy188III TCNNGA 1 cut(s) 949
Hpy99I CGWCG 4 cut(s) 17, 61, 169, 220
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 4 cut(s) 74, 85, 91, 304
HpyCH4V TGCA 8 cut(s) 22, 285, 553, 562, 866, 874, 931, 940
HpyF3I CTNAG 6 cut(s) 105, 408, 465, 576, 663, 830
Hsp92I GRCGYC 2 cut(s) 56, 399
Hsp92II CATG 2 cut(s) 952, 986
HspAI GCGC 4 cut(s) 122, 158, 213, 399
KasI GGCGCC 1 cut(s) 398
KpnI GGTACC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 4 cut(s) 47, 228, 385, 586
LmnI GCTCC 2 cut(s) 42, 204
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 155, 1054
MaeIII GTNAC 1 cut(s) 85
MalI GATC 4 cut(s) 49, 230, 387, 588
MbiI CCGCTC 1 cut(s) 45
MboI GATC 4 cut(s) 47, 228, 385, 586
MboII GAAGA 7 cut(s) 319, 322, 603, 682, 774, 793, 964
MflI RGATCY 2 cut(s) 47, 586
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 2 cut(s) 799, 812
Mly113I GGCGCC 1 cut(s) 399
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 3 cut(s) 56, 303, 903
Mph1103I ATGCAT 1 cut(s) 24
MspA1I CMGCKG 4 cut(s) 183, 550, 559, 961
MspI CCGG 8 cut(s) 29, 53, 113, 345, 452, 494, 590, 629
MspR9I CCNGG 2 cut(s) 420, 453
Mva1269I GAATGC 4 cut(s) 22, 495, 942, 1006
MvaI CCWGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 215
NarI GGCGCC 1 cut(s) 399
NciI CCSGG 1 cut(s) 453
NdeII GATC 4 cut(s) 47, 228, 385, 586
NlaIII CATG 2 cut(s) 952, 986
NlaIV GGNNCC 5 cut(s) 99, 400, 415, 503, 588
NmeAIII GCCGAG 4 cut(s) 87, 381, 702, 883
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 24
NspV TTCGAA 1 cut(s) 375
PagI TCATGA 1 cut(s) 948
PaqCI CACCTGC 1 cut(s) 868
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 4 cut(s) 22, 495, 942, 1006
PfeI GAWTC 4 cut(s) 294, 478, 602, 608
PinAI ACCGGT 1 cut(s) 28
PleI GAGTC 1 cut(s) 136
PluTI GGCGCC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 957
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 5 cut(s) 99, 400, 415, 503, 588
PspPI GGNCC 3 cut(s) 353, 366, 502
PsrI GAACNNNNNNTAC 2 cut(s) 406, 438
PstI CTGCAG 3 cut(s) 555, 564, 876
PstNI CAGNNNCTG 2 cut(s) 550, 559
PsuI RGATCY 2 cut(s) 47, 586
PvuII CAGCTG 3 cut(s) 550, 559, 961
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
Sau3AI GATC 4 cut(s) 47, 228, 385, 586
Sau96I GGNCC 3 cut(s) 353, 366, 502
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 420, 453
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 3 cut(s) 551, 560, 872
SfoI GGCGCC 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 375
SgrAI CRCCGGYG 1 cut(s) 28
SinI GGWCC 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 799, 812
SspDI GGCGCC 1 cut(s) 398
SspMI CTAG 2 cut(s) 155, 1054
StyD4I CCNGG 2 cut(s) 418, 451
TaaI ACNGT 4 cut(s) 74, 85, 91, 304
TaqI TCGA 3 cut(s) 231, 297, 375
TasI AATT 2 cut(s) 799, 812
TauI GCSGC 5 cut(s) 119, 122, 136, 186, 451
TfiI GAWTC 4 cut(s) 294, 478, 602, 608
TscAI CASTG 4 cut(s) 287, 307, 409, 450
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 920, 937, 965
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 4 cut(s) 287, 307, 409, 450
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 799
XspI CTAG 2 cut(s) 155, 1054
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.