Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0014614

Physical Location & Seq

Genomic Coordinates Forward (+)

7682694 .. 7683749

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAAGAGGACGACGAGATCCTGTCACCGGCGTCTGGAGGAAGCCGATCTCCGACGTCGCAGAGGCAGAACGGTCGGATTACGGTGACGGTGGCGGTGCCGCCGGCGCAGATTCCGGCACCGACGCCGTCTCAGAACAAAACCCTAACCCTAGCTCTCCCGTCGTCGGGTAAGCAGCAAGGGCGGAGCAGCGGCGGAGGAAGGGAAGATTGCTGGAGCGAGGAGGCGACGGCGGTGCTGATCGAGGCGTGGGGGGAGAGGTACTTGGAGCTGAGCAGGGGGAATTTGAAGCAGAAGCACTGGAAGGAGGTGGCAGACGTCGTGAGTAGCAGGGAGGACTACGGTAAGATTCCCAAGACTGACATACAGTGTAAGAATAGGATTGATACTGTGAAGAAGAAGTATAAGCTCGAAAAGTCGAAGATTGGGGCTGGAGGAGGACCCAGCAAGTGGCCCTTTTATGAGAGGCTCGATCATTTGATTGGTCCCTCTGGTGGTGCTAAGGTGGGTCCTGGGTCTGGTGGTGGTGGTAGTGGTAGTGGTGAGTTTTCGGGACATAGCCAGAAAATGCCCGTCGGGGTTCGACATAGCCAGTTTCTGGGGCATAGGGCGAAACGGGAGGGAAAGATTAGACAAAAGGATTTGGTGGAATGGGACTCAGATGAGTCGCGGGAGCTGTCGCCTTTTTCGATTGATAATGAGGTTTTCGAGCGGAAGAGGAGGAGGACTGCCAATGCCAATGCGAGTGTGGGGAAGGGGGTAGGGGGTGGATTAAAGCCTTGTGCGGTGGGTAGAGAGAAAGAAGGAGGAGGCGGAGGGTGGGGAAGCTCGATGAGGGAATTGACTCGGGCGATATTGAAGTTTGGGGAGGCTTATGAGCACGCGGAGACAGCGAAGCTGCAGCAGGTGGTGGAGATGGAAAAGCAGAGGATGAAGTTTGCCAAGGAGTTGGAGTTGCAGAGGCTGCAGTTTTTCATGAAGACACAGGTGGAGATTTCTCAGCTAAAGAGCGGAAGTGGAAGAAAAAGTGGGGTTAATGGGGGTCGGGAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010029 GO:0010033 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

352

Amino Acids

38.2

Weight (kDa)

9.56

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	70 - 160	1.3e-20	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14180
fragaria_vesca	FvH4_6g35290
malus_domestica	MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica	Prupe.3G036000_v2.0.a1
pyrus_communis	pycom09g09510
rosa_chinensis	RchiOBHm_Chr2g0146731
rosa_laevigata	RLG00000001092 RLG00000020217
rosa_multiflora	Rmu_co8475067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099960
rosa_rugosa	Rorug02G0396200
rosa_samantha	Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana	Rw2G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
AatII	GACGTC	2 cut(s)	59, 321
Acc36I	ACCTGC	1 cut(s)	895
AccB1I	GGYRCC	2 cut(s)	97, 118
AccB7I	CCANNNNNTGG	2 cut(s)	450, 598
AccBSI	CCGCTC	2 cut(s)	712, 1011
AccII	CGCG	2 cut(s)	670, 884
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	283
AcyI	GRCGYC	4 cut(s)	32, 56, 125, 318
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	8 cut(s)	28, 35, 166, 167, 450, 494, 518, 598
AgsI	TTSAA	2 cut(s)	289, 859
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	7 cut(s)	155, 271, 409, 676, 828, 898, 1003
AluI	AGCT	7 cut(s)	155, 271, 409, 676, 828, 898, 1003
Alw21I	GWGCWC	1 cut(s)	882
Alw26I	GTCTC	2 cut(s)	135, 881
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	2 cut(s)	598, 964
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	5 cut(s)	175, 189, 898, 901, 964
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	4 cut(s)	440, 453, 485, 509
AsuHPI	GGTGA	3 cut(s)	18, 97, 554
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	3 cut(s)	440, 485, 509
BanI	GGYRCC	2 cut(s)	97, 118
BbsI	GAAGAC	1 cut(s)	986
Bbv12I	GWGCWC	1 cut(s)	882
BbvI	GCAGC	5 cut(s)	187, 201, 885, 913, 951
BccI	CCATC	1 cut(s)	910
BceAI	ACGGC	2 cut(s)	112, 246
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 217, 251
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	135, 881
BfaI	CTAG	2 cut(s)	152, 1054
BfmI	CTRYAG	2 cut(s)	899, 965
BfuAI	ACCTGC	1 cut(s)	895
BisI	GCNGC	7 cut(s)	101, 176, 190, 193, 899, 902, 965
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	7 cut(s)	102, 177, 191, 194, 900, 903, 966
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	440, 485, 509
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	4 cut(s)	440, 453, 485, 509
BmiI	GGNNCC	5 cut(s)	99, 120, 442, 487, 510
BmrFI	CCNGG	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	986
BpmI	CTGGAG	3 cut(s)	57, 235, 453
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaHI	GRCGYC	4 cut(s)	32, 56, 125, 318
BsaJI	CCNNGG	2 cut(s)	512, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 35, 166, 167, 450, 494, 518, 598
Bse118I	RCCGGY	2 cut(s)	28, 103
Bse1I	ACTGG	2 cut(s)	305, 592
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	512, 942
BseGI	GGATG	1 cut(s)	936
BseLI	CCNNNNNNNGG	8 cut(s)	28, 35, 166, 167, 450, 494, 518, 598
BseMII	CTCAG	4 cut(s)	146, 263, 672, 1013
BseNI	ACTGG	2 cut(s)	305, 592
BseRI	GAGGAG	5 cut(s)	236, 450, 733, 736, 822
BseXI	GCAGC	5 cut(s)	187, 201, 885, 913, 951
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	670, 884
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	2 cut(s)	97, 118
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	882
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	3 cut(s)	29, 104, 116
BslFI	GGGAC	3 cut(s)	471, 567, 668
BslI	CCNNNNNNNGG	8 cut(s)	28, 35, 166, 167, 450, 494, 518, 598
BsmAI	GTCTC	2 cut(s)	135, 881
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	3 cut(s)	471, 567, 668
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	882
Bsp143I	GATC	4 cut(s)	18, 47, 240, 472
Bsp1720I	GCTNAGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	4 cut(s)	145, 264, 671, 1012
BspFNI	CGCG	2 cut(s)	670, 884
BspHI	TCATGA	1 cut(s)	975
BspLI	GGNNCC	5 cut(s)	99, 120, 442, 487, 510
BspMAI	CTGCAG	2 cut(s)	903, 969
BspMI	ACCTGC	1 cut(s)	895
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	2 cut(s)	97, 118
BsrBI	CCGCTC	2 cut(s)	712, 1011
BsrFI	RCCGGY	2 cut(s)	28, 103
BsrI	ACTGG	2 cut(s)	305, 592
BssAI	RCCGGY	2 cut(s)	28, 103
BssECI	CCNNGG	2 cut(s)	512, 942
BssMI	GATC	4 cut(s)	18, 47, 240, 472
BssNI	GRCGYC	4 cut(s)	32, 56, 125, 318
BssT1I	CCWWGG	1 cut(s)	942
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	6 cut(s)	74, 85, 91, 344, 369, 391
Bst6I	CTCTTC	1 cut(s)	710
BstACI	GRCGYC	4 cut(s)	32, 56, 125, 318
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstC8I	GCNNGC	2 cut(s)	105, 882
BstDEI	CTNAG	5 cut(s)	132, 272, 501, 658, 999
BstF5I	GGATG	1 cut(s)	936
BstFNI	CGCG	2 cut(s)	670, 884
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	4 cut(s)	21, 50, 243, 475
BstMAI	GTCTC	2 cut(s)	135, 881
BstMBI	GATC	4 cut(s)	18, 47, 240, 472
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 181, 890, 964
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	899, 965
BstUI	CGCG	2 cut(s)	670, 884
BstV1I	GCAGC	5 cut(s)	187, 201, 885, 913, 951
BstV2I	GAAGAC	1 cut(s)	986
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	936
BtsIMutI	CAGTG	2 cut(s)	298, 374
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	2 cut(s)	105, 882
CaiI	CAGNNNCTG	2 cut(s)	598, 964
CciI	TCATGA	1 cut(s)	975
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	2 cut(s)	28, 103
Cfr13I	GGNCC	4 cut(s)	440, 453, 485, 509
CseI	GACGC	2 cut(s)	21, 133
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	976
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	5 cut(s)	132, 272, 501, 658, 999
DpnI	GATC	4 cut(s)	20, 49, 242, 474
DpnII	GATC	4 cut(s)	18, 47, 240, 472
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
EciI	GGCGGA	3 cut(s)	199, 210, 828
Eco130I	CCWWGG	1 cut(s)	942
Eco47I	GGWCC	3 cut(s)	440, 485, 509
Eco88I	CYCGRG	1 cut(s)	846
EcoO109I	RGGNCCY	2 cut(s)	440, 509
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	942
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	979
FaiI	YATR	8 cut(s)	365, 405, 462, 558, 588, 606, 876, 977
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	3 cut(s)	471, 567, 668
FatI	CATG	1 cut(s)	975
FauI	CCCGC	1 cut(s)	663
Fnu4HI	GCNGC	7 cut(s)	101, 176, 190, 193, 899, 902, 965
FokI	GGATG	1 cut(s)	943
Fsp4HI	GCNGC	7 cut(s)	101, 176, 190, 193, 899, 902, 965
FspBI	CTAG	2 cut(s)	152, 1054
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	7 cut(s)	101, 176, 190, 193, 899, 902, 965
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	3 cut(s)	57, 235, 453
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	3 cut(s)	29, 104, 116
HgaI	GACGC	2 cut(s)	21, 133
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	4 cut(s)	32, 56, 125, 318
Hin1II	CATG	1 cut(s)	979
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	5 cut(s)	112, 349, 656, 665, 844
HpaII	CCGG	3 cut(s)	29, 104, 116
HphI	GGTGA	3 cut(s)	18, 97, 554
Hpy188I	TCNGA	4 cut(s)	54, 78, 135, 661
Hpy188III	TCNNGA	5 cut(s)	36, 322, 552, 976, 1046
Hpy99I	CGWCG	9 cut(s)	17, 58, 61, 127, 166, 169, 232, 323, 578
HpyAV	CCTTC	4 cut(s)	195, 298, 748, 797
HpyCH4III	ACNGT	6 cut(s)	74, 85, 91, 344, 369, 391
HpyCH4IV	ACGT	2 cut(s)	56, 318
HpyCH4V	TGCA	3 cut(s)	901, 958, 967
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 181, 890, 964
HpyF3I	CTNAG	5 cut(s)	132, 272, 501, 658, 999
HpySE526I	ACGT	2 cut(s)	56, 318
Hsp92I	GRCGYC	4 cut(s)	32, 56, 125, 318
Hsp92II	CATG	1 cut(s)	979
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	18, 47, 240, 472
LmnI	GCTCC	4 cut(s)	186, 216, 268, 673
Lsp1109I	GCAGC	5 cut(s)	187, 201, 885, 913, 951
MaeI	CTAG	2 cut(s)	152, 1054
MaeII	ACGT	2 cut(s)	56, 318
MaeIII	GTNAC	2 cut(s)	24, 85
MalI	GATC	4 cut(s)	20, 49, 242, 474
MbiI	CCGCTC	2 cut(s)	712, 1011
MboI	GATC	4 cut(s)	18, 47, 240, 472
MboII	GAAGA	8 cut(s)	17, 218, 406, 409, 433, 727, 991, 1032
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	882
MluCI	AATT	2 cut(s)	283, 839
MlyI	GAGTC	3 cut(s)	650, 674, 838
MmeI	TCCRAC	3 cut(s)	56, 77, 930
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MseI	TTAA	2 cut(s)	773, 1035
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	3 cut(s)	29, 104, 116
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	2 cut(s)	670, 884
MwoI	GCNNNNNNNGC	4 cut(s)	106, 181, 890, 964
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	4 cut(s)	18, 47, 240, 472
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	979
NlaIV	GGNNCC	5 cut(s)	99, 120, 442, 487, 510
NmuCI	GTSAC	2 cut(s)	24, 85
PagI	TCATGA	1 cut(s)	975
PaqCI	CACCTGC	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	686
PctI	GAATGC	1 cut(s)	1055
PdiI	GCCGGC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	112, 349
PflFI	GACNNNGTC	1 cut(s)	127
PflMI	CCANNNNNTGG	2 cut(s)	450, 598
PkrI	GCNGC	7 cut(s)	102, 177, 191, 194, 900, 903, 966
PleI	GAGTC	3 cut(s)	650, 673, 838
PpsI	GAGTC	3 cut(s)	650, 673, 838
PpuMI	RGGWCCY	2 cut(s)	440, 509
Psp5II	RGGWCCY	2 cut(s)	440, 509
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	5 cut(s)	99, 120, 442, 487, 510
PspPI	GGNCC	4 cut(s)	440, 453, 485, 509
PspPPI	RGGWCCY	2 cut(s)	440, 509
PstI	CTGCAG	2 cut(s)	903, 969
PstNI	CAGNNNCTG	2 cut(s)	598, 964
PsuI	RGATCY	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	773, 1035
SatI	GCNGC	7 cut(s)	101, 176, 190, 193, 899, 902, 965
Sau3AI	GATC	4 cut(s)	18, 47, 240, 472
Sau96I	GGNCC	4 cut(s)	440, 453, 485, 509
SchI	GAGTC	3 cut(s)	650, 674, 838
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	882
SfcI	CTRYAG	2 cut(s)	899, 965
SgrAI	CRCCGGYG	2 cut(s)	28, 103
SinI	GGWCC	3 cut(s)	440, 485, 509
Sse9I	AATT	2 cut(s)	283, 839
SspMI	CTAG	2 cut(s)	152, 1054
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	6 cut(s)	74, 85, 91, 344, 369, 391
TaiI	ACGT	2 cut(s)	59, 321
TaqI	TCGA	8 cut(s)	243, 411, 419, 471, 583, 689, 708, 830
TasI	AATT	2 cut(s)	283, 839
TauI	GCSGC	2 cut(s)	103, 195
TfiI	GAWTC	2 cut(s)	112, 349
Tru1I	TTAA	2 cut(s)	773, 1035
Tru9I	TTAA	2 cut(s)	773, 1035
TscAI	CASTG	2 cut(s)	305, 374
TseFI	GTSAC	2 cut(s)	24, 85
TseI	GCWGC	5 cut(s)	175, 189, 898, 901, 964
Tsp45I	GTSAC	2 cut(s)	24, 85
TspDTI	ATGAA	3 cut(s)	947, 964, 992
TspRI	CASTG	2 cut(s)	305, 374
Tth111I	GACNNNGTC	1 cut(s)	127
Van91I	CCANNNNNTGG	2 cut(s)	450, 598
VpaK11BI	GGWCC	3 cut(s)	440, 485, 509
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XspI	CTAG	2 cut(s)	152, 1054
ZraI	GACGTC	2 cut(s)	57, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.