Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014614

Physical Location & Seq

Genomic Coordinates Reverse (-)

60847573 .. 60849090

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGGAGGACGACGAGATGCATTCACCGGTGTCGGCGGGGAGCGGATCTCCGGCGTCGCCGAGGGCGAACGGTCGGATAACGGTGACGGTGGCGGTTCCGTCTCAGATACCGGCGGCGGCGCAAGAGTCGCCGCAGAACAACACGCTAACCCTAGCGCTGCCGTCGCAGGTCAGAAGCAGCGGCGGGAGGGAGGACTGCTGGAGCGAAAGCGCGACGGCGGTGCTGATCGAGGCGTGGGGGGAGAGGTACCTGGAGCTGAGCAGAGGGAACCTGAAGCAGAAGCACTGGAAGGAGGTGGCTGACATTGTGAGTAGCAGAGAGGACTATGGGAAAATCCCCAAAACTGATATCCAGTGCAAGAACAGAATCGACACTGTGAAGAAGAAGTATAAGTTGGAGAAATCGAAGATGATGGCCGGAGGTGGGCCGAGCAAGTGGCCCTTTTTCGAAAAGCTTGATCATTTGATTGGCACCACTGCTAAGGGTACCCCTGGTTCTGCCTCTGGTGGTGGTTCAGTGCCGCCGGGTTTCTTGGCTAAGAACCATAAGATTCCGATGGGAATGCCGGTCGGGGTCCGAGGAGGAGGAGTTGGTCATTTTGTCCCCAAACACCAGCAGCAGCTGCAGCAGCTGCAGAAGGCAAATGCTAAGAAAAGGGATCTGGTGGAGTGGGATTCGGATTCTTCAAGGGAGGTCTCTCCGGTCTCTGCTGATAGCTTTCCGCCGCCTATTAGAGGAAGAGTTGGGGGTGGAGAGAAGAAAGGTGGGTGGGGGAATTCAATGAGGGAATTGACGCAGGCAATGCTGAGGTTCGGGGAGGCTTATGAGCACGCCGAGACTGCAAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAAGAGTTGGAGTTGCAAAGAATGCAGTTTTTCATGAAGACCCAGCTGGAGATTTCGCAGCTCAAGCATGGTAGGAGGAATGGGAATGCGAGTAATCATCACCGCAGCAACAACAACAACAACAGCGATAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010029 GO:0010033 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

343

Amino Acids

37.7

Weight (kDa)

9.53

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	66 - 156	9.1e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14180
fragaria_vesca	FvH4_6g35290
malus_domestica	MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica	Prupe.3G036000_v2.0.a1
pyrus_communis	pycom09g09510
rosa_chinensis	RchiOBHm_Chr2g0146731
rosa_laevigata	RLG00000001092 RLG00000020217
rosa_multiflora	Rmu_co8475067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099960
rosa_rugosa	Rorug02G0396200
rosa_samantha	Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana	Rw2G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc36I	ACCTGC	2 cut(s)	160, 847
Acc65I	GGTACC	2 cut(s)	249, 488
AccB1I	GGYRCC	3 cut(s)	249, 473, 488
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	215
AclWI	GGATC	2 cut(s)	55, 669
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	251, 490
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	426, 737
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	690, 783
AjnI	CCWGG	2 cut(s)	252, 493
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	8 cut(s)	259, 457, 625, 634, 720, 850, 940, 955
AluI	AGCT	8 cut(s)	259, 457, 625, 634, 720, 850, 940, 955
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	4 cut(s)	108, 703, 712, 833
AlwI	GGATC	2 cut(s)	55, 669
AlwNI	CAGNNNCTG	2 cut(s)	625, 634
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	3 cut(s)	417, 428, 440
ApoI	RAATTY	1 cut(s)	778
AsiGI	ACCGGT	1 cut(s)	28
Asp718I	GGTACC	2 cut(s)	249, 488
AspLEI	GCGC	3 cut(s)	124, 160, 215
AspS9I	GGNCC	3 cut(s)	428, 441, 577
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	3 cut(s)	18, 97, 986
AsuII	TTCGAA	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	577
BanI	GGYRCC	3 cut(s)	249, 473, 488
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	834
BbvCI	CCTCAGC	1 cut(s)	809
BccI	CCATC	3 cut(s)	409, 553, 862
BceAI	ACGGC	2 cut(s)	148, 234
BcgI	CGANNNNNNTGC	4 cut(s)	205, 239, 547, 581
BciT130I	CCWGG	2 cut(s)	254, 495
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	4 cut(s)	108, 703, 712, 833
BfaI	CTAG	2 cut(s)	155, 1030
BfmI	CTRYAG	3 cut(s)	626, 635, 851
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	2 cut(s)	160, 847
BlpI	GCTNAGC	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	254, 495, 528
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	428, 441, 577
BmiI	GGNNCC	6 cut(s)	99, 251, 272, 475, 490, 578
BmrFI	CCNGG	3 cut(s)	254, 495, 528
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	3 cut(s)	223, 275, 962
Bpu10I	CCTNAGC	2 cut(s)	483, 809
Bpu1102I	GCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	703, 712
BsaJI	CCNNGG	3 cut(s)	62, 493, 580
BsaWI	WCCGGW	2 cut(s)	28, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 737
Bse118I	RCCGGY	3 cut(s)	28, 112, 568
Bse1I	ACTGG	2 cut(s)	293, 355
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	254, 495
BseDI	CCNNGG	3 cut(s)	62, 493, 580
BseGI	GGATG	1 cut(s)	888
BseLI	CCNNNNNNNGG	2 cut(s)	426, 737
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	3 cut(s)	119, 251, 800
BseNI	ACTGG	2 cut(s)	293, 355
BseRI	GAGGAG	4 cut(s)	20, 597, 600, 603
BseYI	CCCAGC	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	2 cut(s)	76, 573
BshFI	GGCC	3 cut(s)	419, 430, 442
BshNI	GGYRCC	3 cut(s)	249, 473, 488
BshTI	ACCGGT	1 cut(s)	28
BsiEI	CGRYCG	2 cut(s)	76, 573
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	7 cut(s)	29, 53, 113, 420, 527, 569, 704
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	2 cut(s)	426, 737
BsmAI	GTCTC	4 cut(s)	108, 703, 712, 833
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	590
BsmI	GAATGC	4 cut(s)	22, 570, 921, 985
BsnI	GGCC	3 cut(s)	419, 430, 442
Bso31I	GGTCTC	2 cut(s)	703, 712
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	4 cut(s)	47, 228, 460, 661
Bsp1720I	GCTNAGC	1 cut(s)	260
BspANI	GGCC	3 cut(s)	419, 430, 442
BspCNI	CTCAG	3 cut(s)	118, 252, 801
BspFNI	CGCG	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	6 cut(s)	99, 251, 272, 475, 490, 578
BspMAI	CTGCAG	3 cut(s)	630, 639, 855
BspMI	ACCTGC	2 cut(s)	160, 847
BspPI	GGATC	2 cut(s)	55, 669
BspT104I	TTCGAA	1 cut(s)	450
BspT107I	GGYRCC	3 cut(s)	249, 473, 488
BspTNI	GGTCTC	2 cut(s)	703, 712
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	3 cut(s)	28, 112, 568
BsrI	ACTGG	2 cut(s)	293, 355
BssAI	RCCGGY	3 cut(s)	28, 112, 568
BssECI	CCNNGG	3 cut(s)	62, 493, 580
BssMI	GATC	4 cut(s)	47, 228, 460, 661
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	2 cut(s)	254, 495
Bst4CI	ACNGT	4 cut(s)	74, 85, 91, 379
Bst6I	CTCTTC	1 cut(s)	736
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	4 cut(s)	625, 634, 805, 916
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	801, 834
BstDEI	CTNAG	6 cut(s)	105, 260, 483, 540, 651, 809
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	1 cut(s)	888
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	124, 160, 215
BstKTI	GATC	4 cut(s)	50, 231, 463, 664
BstMAI	GTCTC	4 cut(s)	108, 703, 712, 833
BstMBI	GATC	4 cut(s)	47, 228, 460, 661
BstMCI	CGRYCG	2 cut(s)	76, 573
BstNI	CCWGG	2 cut(s)	254, 495
BstSCI	CCNGG	3 cut(s)	252, 493, 526
BstSFI	CTRYAG	3 cut(s)	626, 635, 851
BstUI	CGCG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	47, 661
BstYI	RGATCY	2 cut(s)	47, 661
BsuRI	GGCC	3 cut(s)	419, 430, 442
BtsCI	GGATG	1 cut(s)	888
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	5 cut(s)	286, 362, 375, 477, 525
BveI	ACCTGC	2 cut(s)	160, 847
Cac8I	GCNNGC	2 cut(s)	801, 834
CaiI	CAGNNNCTG	2 cut(s)	625, 634
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	3 cut(s)	124, 160, 215
Cfr10I	RCCGGY	3 cut(s)	28, 112, 568
Cfr13I	GGNCC	3 cut(s)	428, 441, 577
CseI	GACGC	2 cut(s)	45, 805
Csp6I	GTAC	2 cut(s)	250, 489
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	928, 962
CviQI	GTAC	2 cut(s)	250, 489
DdeI	CTNAG	6 cut(s)	105, 260, 483, 540, 651, 809
DpnI	GATC	4 cut(s)	49, 230, 462, 663
DpnII	GATC	4 cut(s)	47, 228, 460, 661
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	736
EarI	CTCTTC	1 cut(s)	736
EciI	GGCGGA	1 cut(s)	714
Eco31I	GGTCTC	2 cut(s)	703, 712
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	577
Eco47III	AGCGCT	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoRI	GAATTC	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	252, 493
EcoRV	GATATC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	2 cut(s)	931, 965
FaiI	YATR	6 cut(s)	330, 393, 549, 828, 929, 963
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	2 cut(s)	927, 961
FauI	CCCGC	2 cut(s)	31, 179
FbaI	TGATCA	1 cut(s)	460
FokI	GGATG	1 cut(s)	895
FspBI	CTAG	2 cut(s)	155, 1030
GlaI	GCGC	3 cut(s)	123, 159, 214
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	3 cut(s)	223, 275, 962
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	419, 430, 442
HapII	CCGG	7 cut(s)	29, 53, 113, 420, 527, 569, 704
HgaI	GACGC	2 cut(s)	45, 805
HhaI	GCGC	3 cut(s)	124, 160, 215
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	931, 965
Hin6I	GCGC	3 cut(s)	122, 158, 213
HinP1I	GCGC	3 cut(s)	122, 158, 213
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	5 cut(s)	128, 369, 553, 677, 683
HpaII	CCGG	7 cut(s)	29, 53, 113, 420, 527, 569, 704
HphI	GGTGA	3 cut(s)	18, 97, 986
Hpy188I	TCNGA	6 cut(s)	78, 108, 176, 558, 581, 682
Hpy188III	TCNNGA	1 cut(s)	928
Hpy99I	CGWCG	4 cut(s)	17, 61, 169, 220
HpyAV	CCTTC	2 cut(s)	286, 634
HpyCH4III	ACNGT	4 cut(s)	74, 85, 91, 379
HpyCH4V	TGCA	8 cut(s)	22, 360, 628, 637, 845, 853, 910, 919
HpyF3I	CTNAG	6 cut(s)	105, 260, 483, 540, 651, 809
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	931, 965
HspAI	GCGC	3 cut(s)	122, 158, 213
KpnI	GGTACC	2 cut(s)	253, 492
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	47, 228, 460, 661
LmnI	GCTCC	3 cut(s)	42, 204, 256
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	2 cut(s)	155, 1030
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	49, 230, 462, 663
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	47, 228, 460, 661
MboII	GAAGA	7 cut(s)	394, 397, 421, 678, 753, 772, 943
MflI	RGATCY	2 cut(s)	47, 661
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	2 cut(s)	778, 791
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	56, 378, 882
Mph1103I	ATGCAT	1 cut(s)	24
MspA1I	CMGCKG	4 cut(s)	183, 625, 634, 940
MspI	CCGG	7 cut(s)	29, 53, 113, 420, 527, 569, 704
MspR9I	CCNGG	3 cut(s)	254, 495, 528
Mva1269I	GAATGC	4 cut(s)	22, 570, 921, 985
MvaI	CCWGG	2 cut(s)	254, 495
MvnI	CGCG	1 cut(s)	215
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	47, 228, 460, 661
NlaIII	CATG	2 cut(s)	931, 965
NlaIV	GGNNCC	6 cut(s)	99, 251, 272, 475, 490, 578
NmeAIII	GCCGAG	3 cut(s)	87, 456, 862
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	24
NspV	TTCGAA	1 cut(s)	450
PagI	TCATGA	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PctI	GAATGC	4 cut(s)	22, 570, 921, 985
PfeI	GAWTC	4 cut(s)	369, 553, 677, 683
PinAI	ACCGGT	1 cut(s)	28
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	252, 493
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	252, 493
PspN4I	GGNNCC	6 cut(s)	99, 251, 272, 475, 490, 578
PspPI	GGNCC	3 cut(s)	428, 441, 577
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstI	CTGCAG	3 cut(s)	630, 639, 855
PstNI	CAGNNNCTG	2 cut(s)	625, 634
PsuI	RGATCY	2 cut(s)	47, 661
PvuII	CAGCTG	3 cut(s)	625, 634, 940
RsaI	GTAC	2 cut(s)	251, 490
RsaNI	GTAC	2 cut(s)	250, 489
Sau3AI	GATC	4 cut(s)	47, 228, 460, 661
Sau96I	GGNCC	3 cut(s)	428, 441, 577
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	254, 495, 528
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	3 cut(s)	626, 635, 851
SfuI	TTCGAA	1 cut(s)	450
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	2 cut(s)	778, 791
SspMI	CTAG	2 cut(s)	155, 1030
StyD4I	CCNGG	3 cut(s)	252, 493, 526
TaaI	ACNGT	4 cut(s)	74, 85, 91, 379
TaqI	TCGA	4 cut(s)	231, 372, 407, 450
TasI	AATT	2 cut(s)	778, 791
TauI	GCSGC	6 cut(s)	119, 122, 136, 186, 526, 730
TfiI	GAWTC	4 cut(s)	369, 553, 677, 683
TscAI	CASTG	5 cut(s)	293, 362, 382, 484, 525
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	899, 916, 944
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	5 cut(s)	293, 362, 382, 484, 525
VpaK11BI	GGWCC	1 cut(s)	577
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	1 cut(s)	778
XspI	CTAG	2 cut(s)	155, 1030
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.