MD17G1149900.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
13729131 .. 13730252
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1149900.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGAAGAGGACGACGAGATCCAGTCACCGGCATCGGGAGGAAGCCGATCGCCGGCGTCGACGAGGCAGAACGGTCGGATTACGGTGACGGTGGCGGTGCCGCCGGCGCAAGTTCCAGCGCCGACGCCGACTCAGAACAAAATCCTAACCCTAGCTCTGCCGTCGTCGGCTCAGCAACAGGGACGGAGCAGCGGGGGAGGAAGGGAAGATTGCTGGAGCGAAGGGGCGACGGCGGTGCTGATCGAGGCGTGGGGGGAGAGGTACTTGGAGCTGAGCAGGGGGAATTTGAAGCAGAAGCACTGGAAGGAGGTGGCGGACGTCGTGAGCAGCAGGGAGAACTACGGTAAGATTCCAAAGACTGACATACAGTGTAAGAATAGGATTGATACTGTGAAGAAGAAGTATAAACTCGAAAAATCGAAGATTGGGGCCGGAGGAGGACCCAGCAAGTGGCCTTTTTACGAGAGGCTCGATCATTTGATTGGCCCCTCTGGTGCTAAGGTGGGTCCTGGGTCTGCTGGCGGCGGTGGTAGTGGTGGGTTTTCGGGGCATAGCAAAAAAATGCCGGTCGGGCTTCGACATAGCCAATTTATCGGGCGTAGGGCTAAACGGGAGGGAAAGATTAGACAAAGGGATTTGGTAGAATCGGATTCAGACGAGTCTCGGGAGCCTTCGCCTATTTCGATTGATAATGAGATTTTCGAGCAGAAGAGGAGGACTGCCAATGCCAATGTCAATGCCAATGCGAGCGTGAGGAAAAGGGTAGGGGGTGGATTAAGACCTTGTGCGGTGGGTAGGGAGAAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGAGCTCGGTGAGGGAACTGACTCGAGCGATATTGAAGTTTGGGGAGGCTTATGAGCATGCGGAGTCAGCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCCAAGGAGTTGGAGTTGCAGAGGCTGCAGTTTTTCATGAAGACACAGGTGGAGATTTCTCAGCTGAAGAGTGGAAGTGGGAGAAAAAGCAGGGTTAACGGGGTTGGGAATGCTAGTAACCATCGTAGCAACAACAACAATAACAGTGATTGTAGCAGCTAA

Protein Analysis

374

Amino Acids

40.11

Weight (kDa)

9.8

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 70 - 160 2.7e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14180
fragaria_vesca FvH4_6g35290
malus_domestica MD09G1176900.v1.1 MD17G1149900.v1.1
prunus_persica Prupe.3G036000_v2.0.a1
pyrus_communis pycom09g09510
rosa_chinensis RchiOBHm_Chr2g0146731
rosa_laevigata RLG00000001092 RLG00000020217
rosa_multiflora Rmu_co8475067.1_g000001
rosa_roxburghii Rroxscaffold_2G00099960
rosa_rugosa Rorug02G0396200
rosa_samantha Rh2AG452700 Rh2BG465400 Rh2CG439600 Rh2DG474400
rosa_wichuraiana Rw2G036960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 916
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 916
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 450
AccI GTMKAC 1 cut(s) 59
AciI CCGC 9 cut(s) 95, 101, 192, 233, 314, 522, 525, 788, 905
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 1046
AcyI GRCGYC 3 cut(s) 56, 125, 318
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 4 cut(s) 28, 35, 52, 450
AgsI TTSAA 2 cut(s) 289, 880
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 6 cut(s) 155, 271, 849, 919, 1024, 1119
AluI AGCT 6 cut(s) 155, 271, 849, 919, 1024, 1119
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 985
Ama87I CYCGRG 2 cut(s) 663, 867
AoxI GGCC 3 cut(s) 429, 452, 484
ApeKI GCWGC 6 cut(s) 189, 327, 919, 922, 985, 1116
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 2 cut(s) 109, 121
AspS9I GGNCC 4 cut(s) 429, 440, 485, 506
AsuHPI GGTGA 3 cut(s) 18, 97, 865
AvaI CYCGRG 2 cut(s) 663, 867
AvaII GGWCC 2 cut(s) 440, 506
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 851
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 5 cut(s) 201, 339, 906, 934, 972
BccI CCATC 2 cut(s) 931, 1089
BceAI ACGGC 2 cut(s) 145, 246
BcgI CGANNNNNNTGC 4 cut(s) 56, 90, 217, 251
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 666
BfaI CTAG 2 cut(s) 152, 1074
BfmI CTRYAG 2 cut(s) 920, 986
BfoI RGCGCY 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 916
BglI GCCNNNNNGGC 1 cut(s) 571
BisI GCNGC 8 cut(s) 101, 190, 328, 523, 920, 923, 986, 1117
BlpI GCTNAGC 2 cut(s) 171, 272
BlsI GCNGC 8 cut(s) 102, 191, 329, 524, 921, 924, 987, 1118
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 440, 506
BmeT110I CYCGRG 2 cut(s) 663, 867
BmgT120I GGNCC 4 cut(s) 429, 440, 485, 506
BmiI GGNNCC 6 cut(s) 99, 430, 442, 487, 507, 669
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 1007
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 498
Bpu1102I GCTNAGC 2 cut(s) 171, 272
BsaHI GRCGYC 3 cut(s) 56, 125, 318
BsaJI CCNNGG 2 cut(s) 509, 963
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 35, 52, 450
Bse118I RCCGGY 4 cut(s) 28, 52, 103, 565
Bse1I ACTGG 2 cut(s) 22, 305
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 509, 963
BseGI GGATG 1 cut(s) 957
BseLI CCNNNNNNNGG 4 cut(s) 28, 35, 52, 450
BseMII CTCAG 4 cut(s) 146, 185, 263, 1034
BseNI ACTGG 2 cut(s) 22, 305
BseXI GCAGC 5 cut(s) 201, 339, 906, 934, 972
BseYI CCCAGC 1 cut(s) 443
Bsh1285I CGRYCG 3 cut(s) 50, 76, 570
BshFI GGCC 3 cut(s) 431, 454, 486
BshNI GGYRCC 1 cut(s) 97
BsiEI CGRYCG 3 cut(s) 50, 76, 570
BsiHKAI GWGCWC 1 cut(s) 851
BsiHKCI CYCGRG 2 cut(s) 663, 867
BsiSI CCGG 5 cut(s) 29, 53, 104, 432, 566
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 4 cut(s) 28, 35, 52, 450
BsmAI GTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 3 cut(s) 431, 454, 486
BsoBI CYCGRG 2 cut(s) 663, 867
Bsp1286I GDGCHC 1 cut(s) 851
Bsp143I GATC 4 cut(s) 18, 47, 240, 472
Bsp1720I GCTNAGC 2 cut(s) 171, 272
BspACI CCGC 9 cut(s) 95, 101, 192, 233, 314, 522, 525, 788, 905
BspANI GGCC 3 cut(s) 431, 454, 486
BspCNI CTCAG 4 cut(s) 145, 184, 264, 1033
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 6 cut(s) 99, 430, 442, 487, 507, 669
BspMAI CTGCAG 2 cut(s) 924, 990
BspMI ACCTGC 1 cut(s) 916
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 97
BsrFI RCCGGY 4 cut(s) 28, 52, 103, 565
BsrI ACTGG 2 cut(s) 22, 305
BssAI RCCGGY 4 cut(s) 28, 52, 103, 565
BssECI CCNNGG 2 cut(s) 509, 963
BssMI GATC 4 cut(s) 18, 47, 240, 472
BssNI GRCGYC 3 cut(s) 56, 125, 318
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 7 cut(s) 74, 85, 91, 344, 369, 391, 1106
Bst6I CTCTTC 2 cut(s) 704, 1022
BstACI GRCGYC 3 cut(s) 56, 125, 318
BstAPI GCANNNNNTGC 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 54, 105, 520, 748, 903
BstDEI CTNAG 5 cut(s) 132, 171, 272, 498, 1020
BstF5I GGATG 1 cut(s) 957
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 109, 121
BstKTI GATC 4 cut(s) 21, 50, 243, 475
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 4 cut(s) 18, 47, 240, 472
BstMCI CGRYCG 3 cut(s) 50, 76, 570
BstMWI GCNNNNNNNGC 4 cut(s) 106, 571, 911, 985
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 2 cut(s) 920, 986
BstV1I GCAGC 5 cut(s) 201, 339, 906, 934, 972
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 970
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 3 cut(s) 431, 454, 486
BtsCI GGATG 1 cut(s) 957
BtsIMutI CAGTG 3 cut(s) 298, 374, 1111
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 5 cut(s) 54, 105, 520, 748, 903
CaiI CAGNNNCTG 1 cut(s) 985
CciI TCATGA 1 cut(s) 996
CfoI GCGC 2 cut(s) 109, 121
Cfr10I RCCGGY 4 cut(s) 28, 52, 103, 565
Cfr13I GGNCC 4 cut(s) 429, 440, 485, 506
CseI GACGC 2 cut(s) 45, 133
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 902, 997
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 5 cut(s) 132, 171, 272, 498, 1020
DpnI GATC 4 cut(s) 20, 49, 242, 474
DpnII GATC 4 cut(s) 18, 47, 240, 472
Eam1104I CTCTTC 2 cut(s) 704, 1022
EarI CTCTTC 2 cut(s) 704, 1022
EciI GGCGGA 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 963
Eco24I GRGCYC 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 440, 506
Eco53kI GAGCTC 1 cut(s) 849
Eco57I CTGAAG 1 cut(s) 1046
Eco88I CYCGRG 2 cut(s) 663, 867
EcoICRI GAGCTC 1 cut(s) 849
EcoO109I RGGNCCY 2 cut(s) 440, 506
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 851
ErhI CCWWGG 1 cut(s) 963
FaeI CATG 2 cut(s) 905, 1000
FaiI YATR 7 cut(s) 365, 405, 552, 582, 897, 903, 998
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 901, 996
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 8 cut(s) 101, 190, 328, 523, 920, 923, 986, 1117
FokI GGATG 1 cut(s) 964
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 8 cut(s) 101, 190, 328, 523, 920, 923, 986, 1117
FspBI CTAG 2 cut(s) 152, 1074
GlaI GCGC 2 cut(s) 108, 120
GluI GCNGC 8 cut(s) 101, 190, 328, 523, 920, 923, 986, 1117
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 3 cut(s) 431, 454, 486
HapII CCGG 5 cut(s) 29, 53, 104, 432, 566
HgaI GACGC 2 cut(s) 45, 133
HhaI GCGC 2 cut(s) 109, 121
Hin1I GRCGYC 3 cut(s) 56, 125, 318
Hin1II CATG 2 cut(s) 905, 1000
Hin6I GCGC 2 cut(s) 107, 119
HinP1I GCGC 2 cut(s) 107, 119
HincII GTYRAC 2 cut(s) 60, 1057
HindII GTYRAC 2 cut(s) 60, 1057
HinfI GANTC 7 cut(s) 130, 349, 644, 650, 659, 865, 908
HpaI GTTAAC 1 cut(s) 1057
HpaII CCGG 5 cut(s) 29, 53, 104, 432, 566
HphI GGTGA 3 cut(s) 18, 97, 865
Hpy166II GTNNAC 2 cut(s) 60, 1057
Hpy188I TCNGA 4 cut(s) 78, 135, 649, 655
Hpy188III TCNNGA 4 cut(s) 36, 322, 665, 997
Hpy8I GTNNAC 2 cut(s) 60, 1057
Hpy99I CGWCG 8 cut(s) 17, 61, 64, 127, 166, 169, 232, 323
HpyAV CCTTC 5 cut(s) 195, 215, 298, 681, 803
HpyCH4III ACNGT 7 cut(s) 74, 85, 91, 344, 369, 391, 1106
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 922, 979, 988
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 571, 911, 985
HpyF3I CTNAG 5 cut(s) 132, 171, 272, 498, 1020
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 3 cut(s) 56, 125, 318
Hsp92II CATG 2 cut(s) 905, 1000
HspAI GCGC 2 cut(s) 107, 119
KroI GCCGGC 2 cut(s) 52, 103
KroNI GCCGGC 2 cut(s) 54, 105
KspAI GTTAAC 1 cut(s) 1057
Kzo9I GATC 4 cut(s) 18, 47, 240, 472
LmnI GCTCC 5 cut(s) 186, 216, 268, 667, 846
Lsp1109I GCAGC 5 cut(s) 201, 339, 906, 934, 972
LweI GCATC 1 cut(s) 41
MaeI CTAG 2 cut(s) 152, 1074
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 24, 85, 1076
MalI GATC 4 cut(s) 20, 49, 242, 474
MboI GATC 4 cut(s) 18, 47, 240, 472
MboII GAAGA 8 cut(s) 17, 218, 406, 409, 433, 721, 1012, 1039
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 851
MluCI AATT 2 cut(s) 283, 587
MlyI GAGTC 4 cut(s) 124, 668, 859, 917
MmeI TCCRAC 2 cut(s) 56, 951
MreI CGCCGGCG 2 cut(s) 52, 103
MroNI GCCGGC 2 cut(s) 52, 103
MseI TTAA 2 cut(s) 776, 1056
MspA1I CMGCKG 2 cut(s) 192, 1024
MspI CCGG 5 cut(s) 29, 53, 104, 432, 566
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 1075
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 4 cut(s) 106, 571, 911, 985
NaeI GCCGGC 2 cut(s) 54, 105
NdeII GATC 4 cut(s) 18, 47, 240, 472
NgoMIV GCCGGC 2 cut(s) 52, 103
NlaIII CATG 2 cut(s) 905, 1000
NlaIV GGNNCC 6 cut(s) 99, 430, 442, 487, 507, 669
NmuCI GTSAC 2 cut(s) 24, 85
NspI RCATGY 1 cut(s) 905
PaeI GCATGC 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 867
PagI TCATGA 1 cut(s) 996
PaqCI CACCTGC 1 cut(s) 916
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 468, 680
PctI GAATGC 1 cut(s) 1075
PdiI GCCGGC 2 cut(s) 54, 105
PfeI GAWTC 3 cut(s) 349, 644, 650
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 8 cut(s) 102, 191, 329, 524, 921, 924, 987, 1118
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 4 cut(s) 124, 667, 859, 916
PpsI GAGTC 4 cut(s) 124, 667, 859, 916
PpuMI RGGWCCY 2 cut(s) 440, 506
Psp124BI GAGCTC 1 cut(s) 851
Psp5II RGGWCCY 2 cut(s) 440, 506
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 6 cut(s) 99, 430, 442, 487, 507, 669
PspPI GGNCC 4 cut(s) 429, 440, 485, 506
PspPPI RGGWCCY 2 cut(s) 440, 506
PspXI VCTCGAGB 1 cut(s) 867
PstI CTGCAG 2 cut(s) 924, 990
PstNI CAGNNNCTG 1 cut(s) 985
PsuI RGATCY 1 cut(s) 18
PvuI CGATCG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 851
SalI GTCGAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 776, 1056
SatI GCNGC 8 cut(s) 101, 190, 328, 523, 920, 923, 986, 1117
Sau3AI GATC 4 cut(s) 18, 47, 240, 472
Sau96I GGNCC 4 cut(s) 429, 440, 485, 506
SchI GAGTC 4 cut(s) 124, 668, 859, 917
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 851
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 2 cut(s) 920, 986
Sfr274I CTCGAG 1 cut(s) 867
SgrAI CRCCGGYG 2 cut(s) 52, 103
SgrDI CGTCGACG 1 cut(s) 58
SinI GGWCC 2 cut(s) 440, 506
SlaI CTCGAG 1 cut(s) 867
SmlI CTYRAG 1 cut(s) 867
SmoI CTYRAG 1 cut(s) 867
SphI GCATGC 1 cut(s) 905
Sse9I AATT 2 cut(s) 283, 587
SsiI CCGC 9 cut(s) 95, 101, 192, 233, 314, 522, 525, 788, 905
SspMI CTAG 2 cut(s) 152, 1074
SstI GAGCTC 1 cut(s) 851
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 7 cut(s) 74, 85, 91, 344, 369, 391, 1106
TaiI ACGT 1 cut(s) 321
TaqI TCGA 9 cut(s) 59, 243, 411, 419, 471, 577, 683, 702, 868
TasI AATT 2 cut(s) 283, 587
TauI GCSGC 2 cut(s) 103, 525
TfiI GAWTC 3 cut(s) 349, 644, 650
Tru1I TTAA 2 cut(s) 776, 1056
Tru9I TTAA 2 cut(s) 776, 1056
TscAI CASTG 3 cut(s) 305, 374, 1111
TseFI GTSAC 2 cut(s) 24, 85
TseI GCWGC 6 cut(s) 189, 327, 919, 922, 985, 1116
Tsp45I GTSAC 2 cut(s) 24, 85
TspDTI ATGAA 3 cut(s) 968, 985, 1013
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 3 cut(s) 305, 374, 1111
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 2 cut(s) 440, 506
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 905
XhoI CTCGAG 1 cut(s) 867
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 2 cut(s) 152, 1074
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.