Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Forward (+)

4940318 .. 4941398

Gene Structure 1081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCTCAGTCCAAAGTAGCTATGAAAAAAGATTCGATGAGGAAGAATAAGAAATTGGTTATAAATATTGCTCTAGATAAAGAAGTTCTTGCTTCGAGAGTGGAAGCTGATCATGATCTTGGTTCTGTAAGAGATGAGAAAGAGAGGCTTGAATCATCAGAGAGACGAAGAGAGGTTTGTTCCAAAGCTGAAGATATTGTTGATAAGGCCATTGATAATCATTCTAGGGTTAGAGGAGATGGGATTATGCGGGAAGCTGATGTCGGGACAGGGTTATCGGGCGCGTTAAACCGTCTTAGAGAGCAAGGAACTTTCAAGGAGGAAGGCAAGGTTGTTGGTGTTAAGGACAATAATCATGAAGATGACAGATTCAAAGATAGATTTAAGGATATACAGATTCAGAGGGTGAACAAGTGGGGAAGGATAATGACTGAGAAAGAAGCGTATCGGTCACTGTGTCATGGATTCCATGGGAAGGGACCTGGGAAGAAGAAGCAAGAGAAACAGAGGAAGAAGCATGAAGATAAGTCAAAACAGATGGAATCTTCAGAGAGATCTGTGGAAAGAATAAGAGAAATTCATGCCATATCCAAGACTCCTTACATTGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

204

Amino Acids

23.54

Weight (kDa)

9.6

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SART-1	PF03343	118 - 175	1.7e-15	SART-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	210, 531
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	3 cut(s)	152, 316, 373
AjnI	CCWGG	1 cut(s)	481
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	4 cut(s)	20, 107, 188, 257
AluI	AGCT	4 cut(s)	20, 107, 188, 257
Alw26I	GTCTC	2 cut(s)	9, 157
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	479
BccI	CCATC	2 cut(s)	233, 532
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	9, 157
BfaI	CTAG	3 cut(s)	74, 225, 613
BglII	AGATCT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	469, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	469, 482
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	20, 423
BseRI	GAGGAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	209
BslFI	GGGAC	2 cut(s)	280, 492
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	9, 157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	280, 492
BsnI	GGCC	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	109, 115, 554
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	19, 424
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	2 cut(s)	112, 355
BspLI	GGNNCC	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	469, 482
BssMI	GATC	3 cut(s)	109, 115, 554
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	293, 456
Bst6I	CTCTTC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	6, 296, 432
BstDSI	CCRYGG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	3 cut(s)	112, 118, 557
BstMAI	GTCTC	2 cut(s)	9, 157
BstMBI	GATC	3 cut(s)	109, 115, 554
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstUI	CGCG	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	452
CciI	TCATGA	2 cut(s)	112, 355
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	479
CviAII	CATG	6 cut(s)	113, 356, 461, 470, 518, 581
CviJI	RGCY	6 cut(s)	20, 107, 148, 188, 209, 257
CviKI_1	RGCY	6 cut(s)	20, 107, 148, 188, 209, 257
DdeI	CTNAG	3 cut(s)	6, 296, 432
DpnI	GATC	3 cut(s)	111, 117, 556
DpnII	GATC	3 cut(s)	109, 115, 554
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	210, 531
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	6 cut(s)	116, 359, 464, 473, 521, 584
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 132, 164
FaqI	GGGAC	2 cut(s)	280, 492
FatI	CATG	6 cut(s)	112, 355, 460, 469, 517, 580
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	109
FspBI	CTAG	3 cut(s)	74, 225, 613
GlaI	GCGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	6 cut(s)	116, 359, 464, 473, 521, 584
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	7 cut(s)	32, 152, 369, 397, 465, 542, 595
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	160, 402, 550
Hpy188III	TCNNGA	5 cut(s)	74, 96, 113, 265, 356
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	3 cut(s)	317, 414, 469
HpyCH4III	ACNGT	2 cut(s)	293, 456
HpyF3I	CTNAG	3 cut(s)	6, 296, 432
Hsp92II	CATG	6 cut(s)	116, 359, 464, 473, 521, 584
HspAI	GCGC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	109, 115, 554
LpnPI	CCDG	3 cut(s)	255, 468, 495
MaeI	CTAG	3 cut(s)	74, 225, 613
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	3 cut(s)	111, 117, 556
MboI	GATC	3 cut(s)	109, 115, 554
MboII	GAAGA	9 cut(s)	55, 180, 203, 371, 499, 502, 523, 533, 537
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	2 cut(s)	53, 576
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	7 cut(s)	33, 138, 166, 227, 313, 396, 501
MseI	TTAA	3 cut(s)	287, 342, 384
MslI	CAYNNNNRTG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	109, 115, 554
NlaIII	CATG	6 cut(s)	116, 359, 464, 473, 521, 584
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	450
PagI	TCATGA	2 cut(s)	112, 355
PfeI	GAWTC	6 cut(s)	32, 152, 369, 397, 465, 542
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	479
PsiI	TTATAA	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	479
PspPPI	RGGWCCY	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	287, 342, 384
Sau3AI	GATC	3 cut(s)	109, 115, 554
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	7 cut(s)	22, 109, 177, 190, 259, 333, 484
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	2 cut(s)	53, 576
SsiI	CCGC	1 cut(s)	250
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	74, 225, 613
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	293, 456
TaqI	TCGA	2 cut(s)	35, 95
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	53, 576
TfiI	GAWTC	6 cut(s)	32, 152, 369, 397, 465, 542
Tru1I	TTAA	3 cut(s)	287, 342, 384
Tru9I	TTAA	3 cut(s)	287, 342, 384
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	4 cut(s)	38, 372, 534, 569
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	576
XbaI	TCTAGA	1 cut(s)	73
XspI	CTAG	3 cut(s)	74, 225, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.