Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Reverse (-)

11785288 .. 11785680

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAAAGCTCACAATCAAGGTCTCAAAAATCATGCAAGTATCGCACTAGGATGAACAATAGCCAATTAGAAGACAACGATTGTTGTGATGATGGTCTCGTCTTTTCTAATGATATTGATTATCATGAGGAGAGAACAAGGAAACTCAATATTCTTAAAAAGAAAGAAGAGACCGTGACCGGTGTAAAGTCAATCGCACTCCATGCCGCCACCGCAATCCCCTCCGGCGAGTCGTCTTCCCCCAAGGTTGTCTTATCATACATGGACACCTTTGTCTGCGGCCTCCAGCTTGATCATCATGATGAATATTCTCACAACCATAAGCCTCAGTTTCTAAAGCAAGAAGCTGATTTCGTTGCTTTGTTGGTAAAAAGGTTCTCAAACTTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

6.29

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	391
AasI	GACNNNNNNGTC	1 cut(s)	272
AciI	CCGC	3 cut(s)	207, 213, 279
AgeI	ACCGGT	1 cut(s)	179
AluBI	AGCT	3 cut(s)	9, 289, 347
AluI	AGCT	3 cut(s)	9, 289, 347
Alw26I	GTCTC	3 cut(s)	27, 101, 164
AoxI	GGCC	1 cut(s)	280
AsiGI	ACCGGT	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	78, 228
BccI	CCATC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	3 cut(s)	27, 101, 164
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	207, 280
BlsI	GCNGC	2 cut(s)	208, 281
BpiI	GAAGAC	2 cut(s)	78, 228
BpmI	CTGGAG	1 cut(s)	269
BsaI	GGTCTC	3 cut(s)	27, 101, 164
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	282
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	180, 225
BsmAI	GTCTC	3 cut(s)	27, 101, 164
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	3 cut(s)	27, 101, 164
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	3 cut(s)	207, 213, 279
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	340
BspHI	TCATGA	2 cut(s)	124, 298
BspTNI	GGTCTC	3 cut(s)	27, 101, 164
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	3 cut(s)	27, 101, 164
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
BstV2I	GAAGAC	2 cut(s)	78, 228
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	57
CciI	TCATGA	2 cut(s)	124, 298
Cfr10I	RCCGGY	1 cut(s)	179
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	5 cut(s)	33, 125, 203, 262, 299
CviJI	RGCY	6 cut(s)	9, 63, 282, 289, 325, 347
CviKI_1	RGCY	6 cut(s)	9, 63, 282, 289, 325, 347
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	3 cut(s)	27, 101, 164
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	36, 128, 206, 265, 302
FaiI	YATR	8 cut(s)	34, 126, 204, 259, 263, 300, 321, 391
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	5 cut(s)	32, 124, 202, 261, 298
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	207, 280
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	207, 280
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	207, 280
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	180, 225
Hin1II	CATG	5 cut(s)	36, 128, 206, 265, 302
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	2 cut(s)	180, 225
Hpy188III	TCNNGA	2 cut(s)	125, 299
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	5 cut(s)	36, 128, 206, 265, 302
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	193, 238, 299
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	83, 179, 228
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	121, 232, 293, 336
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	50, 300
MspI	CCGG	2 cut(s)	180, 225
MwoI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	5 cut(s)	36, 128, 206, 265, 302
NmuCI	GTSAC	1 cut(s)	175
PagI	TCATGA	2 cut(s)	124, 298
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	208, 281
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	50, 300
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	207, 280
Sau3AI	GATC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	239
SetI	ASST	7 cut(s)	11, 23, 249, 272, 291, 349, 377
SmiMI	CAYNNNNRTG	2 cut(s)	50, 300
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	207, 213, 279
SspI	AATATT	2 cut(s)	151, 308
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	175
TasI	AATT	1 cut(s)	65
TauI	GCSGC	2 cut(s)	209, 282
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	68, 318
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.