Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Reverse (-)

27780114 .. 27781219

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0286100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGTGCTAGAGGCTTTGTCAAACTACAAAAGAAACTTCTTCGTGAGATTCTAAAGACGAAATTGAAGGTGGCCAATGTGGCTAGAGGAATCACTATGATCAAGGAAATGTTGCAATACAAAAGTGTTCTCTTAGTGCTTGATGCTGTGAATGATATTGATCAGTTAAACAACTTAGCTGGTGAATGTAGTTGGTTTGATATGGGAAGTAGAATCATCATAACAACAAGGGATAAGCCTTCAAACCAACTAGCTGGTTTGTGGGGTTGCATTTGGATGCATGACTTGCTAGAAGAAATGGGTAGAGATATAGTCCATCAACAGTCGCCAGATAACCCTGAAAAACGTAGCAGATGTCTTGAAATTGACAACATACTCCGGAAAAATATGGGTGTTCATGTTCATACTCCAAACTATAAGATTTCGTGGATTTTGAAGGTCATCAACTCCACAATCAAATTGTATAGAACTGGGATGGCACCGTCCAGATCCGGGATTGACCATTTCGACATTTCCCATAATAACACGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

177

Amino Acids

20.21

Weight (kDa)

9.45

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AccIII	TCCGGA	1 cut(s)	378
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	4 cut(s)	67, 243, 362, 436
AluBI	AGCT	2 cut(s)	179, 254
AluI	AGCT	2 cut(s)	179, 254
AlwI	GGATC	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	478
BccI	CCATC	2 cut(s)	324, 469
BclI	TGATCA	2 cut(s)	99, 160
BcnI	CCSGG	1 cut(s)	493
BfaI	CTAG	4 cut(s)	9, 84, 251, 290
BglI	GCCNNNNNGGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	493
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	2 cut(s)	133, 267
BmuI	ACTGGG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	378
BseGI	GGATG	2 cut(s)	282, 480
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	379, 492
BslI	CCNNNNNNNGG	1 cut(s)	492
BsnI	GGCC	1 cut(s)	74
Bsp13I	TCCGGA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	99, 160, 488
BspANI	GGCC	1 cut(s)	74
BspEI	TCCGGA	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	99, 160, 488
Bst4CI	ACNGT	2 cut(s)	324, 483
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	133, 175
BstF5I	GGATG	2 cut(s)	282, 480
BstKTI	GATC	3 cut(s)	102, 163, 491
BstMBI	GATC	3 cut(s)	99, 160, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 286
BstSCI	CCNGG	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	282, 480
CviAII	CATG	2 cut(s)	281, 398
CviJI	RGCY	6 cut(s)	15, 74, 83, 179, 238, 254
CviKI_1	RGCY	6 cut(s)	15, 74, 83, 179, 238, 254
DdeI	CTNAG	2 cut(s)	133, 175
DpnI	GATC	3 cut(s)	101, 162, 490
DpnII	GATC	3 cut(s)	99, 160, 488
EaeI	YGGCCR	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	282
FaeI	CATG	2 cut(s)	284, 401
FatI	CATG	2 cut(s)	280, 397
FbaI	TGATCA	2 cut(s)	99, 160
FokI	GGATG	2 cut(s)	289, 487
FspBI	CTAG	4 cut(s)	9, 84, 251, 290
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	2 cut(s)	379, 492
Hin1II	CATG	2 cut(s)	284, 401
HinfI	GANTC	3 cut(s)	49, 90, 213
HpaII	CCGG	2 cut(s)	379, 492
HphI	GGTGA	1 cut(s)	194
Hpy188III	TCNNGA	4 cut(s)	44, 359, 379, 486
HpyAV	CCTTC	3 cut(s)	61, 249, 430
HpyCH4III	ACNGT	2 cut(s)	324, 483
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	115, 270, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 286
HpyF3I	CTNAG	2 cut(s)	133, 175
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	284, 401
Kpn2I	TCCGGA	1 cut(s)	378
Ksp22I	TGATCA	2 cut(s)	99, 160
Kzo9I	GATC	3 cut(s)	99, 160, 488
LpnPI	CCDG	8 cut(s)	165, 240, 342, 351, 392, 456, 499, 505
LweI	GCATC	2 cut(s)	133, 267
MaeI	CTAG	4 cut(s)	9, 84, 251, 290
MaeII	ACGT	1 cut(s)	346
MalI	GATC	3 cut(s)	101, 162, 490
MboI	GATC	3 cut(s)	99, 160, 488
MboII	GAAGA	2 cut(s)	32, 305
MflI	RGATCY	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	3 cut(s)	62, 363, 458
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	2 cut(s)	5, 80
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	379, 492
MspR9I	CCNGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	80, 286
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	99, 160, 488
NlaIII	CATG	2 cut(s)	284, 401
NlaIV	GGNNCC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	49, 90, 213
PfoI	TCCNGGA	1 cut(s)	491
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	99, 160, 488
ScrFI	CCNGG	1 cut(s)	493
SetI	ASST	5 cut(s)	72, 181, 256, 349, 441
SfaNI	GCATC	2 cut(s)	133, 267
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	62, 363, 458
SspMI	CTAG	4 cut(s)	9, 84, 251, 290
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	324, 483
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	507
TasI	AATT	3 cut(s)	62, 363, 458
TfiI	GAWTC	3 cut(s)	49, 90, 213
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	386, 392
XspI	CTAG	4 cut(s)	9, 84, 251, 290
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.