Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Forward (+)

59600620 .. 59601429

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACAATAGCCAATTAGACGAGAACGATTGTTGTGATGATGGTCTCGTCTTTTCTGATGATATTGATTATCATGAGGAGAGAACAAGGAAACTCAATATTCTTAAAAAGAAAGAAGAGATCGTGAGCGGTGTAAAGTCAATCGCACTCCATGCCGCCACCGCAATCCCCTCCGGCGAGTCATCTTCCCCCAAGGTTGAAATATCATACATGGACACCTTTGTCTGCGGCCTCCAGCTTGATCATCATGATGAATATTCTCACAACCATAAGCCTCAGTTTCTAAAGCAAGAAGCTGATTCTGAGAAATTAGAAGCAAAAGACGATGCTGATGAATCAGAATTAAATGAAGATGGAAATCGAGTGGTAATCAAGGATGAGAAAAAATTTCCGGCTGATGGAACTATACGTGAAGCTGCCATTGGAAAAGGGTTATCTGGTGCCCTAAATTTGCTCAGAGATCGAAGAACCCTAACAGAAGAAGAGGAGGGCAAGAAAAAGAGAAAGCTCGAGACGACAAGTCATCATCATGTAGCTAAACCTAAAAGGTTACATGATTATCAGGAAGAGGATATTCGAATTGAGAGAACCGATGAGTTTGGGGGAAGCTTGACAGAGAAGGAAGCTTATAAGAGATTTTGTCATACCTTTCATGGGAAAAAATCTGGGGCAAGGAAGCAAGAAAAGCGCATAAAAAAATTCCAGAGAGAACAGAAACTGGAGAAGGATACACCATCACTCTTTGCGGAGAGGATGAAGGAGACTCAAGCTCGACTCCAGACACCCTATATTGTCCTCAGAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

269

Amino Acids

30.97

Weight (kDa)

6.34

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SART-1	PF03343	27 - 187	1.1e-06	SART-1 family
SART-1	PF03343	191 - 237	1.3e-15	SART-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AasI	GACNNNNNNGTC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	5 cut(s)	129, 156, 162, 228, 746
AcsI	RAATTY	3 cut(s)	386, 448, 698
AfiI	CCNNNNNNNGG	2 cut(s)	398, 654
AgsI	TTSAA	1 cut(s)	200
AhdI	GACNNNNNGTC	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	8 cut(s)	238, 296, 416, 508, 536, 609, 626, 770
AluI	AGCT	8 cut(s)	238, 296, 416, 508, 536, 609, 626, 770
Alw26I	GTCTC	3 cut(s)	50, 506, 755
AlwNI	CAGNNNCTG	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	3 cut(s)	386, 448, 698
AspLEI	GCGC	1 cut(s)	690
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	4 cut(s)	35, 347, 392, 742
BciVI	GTATCC	1 cut(s)	721
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	50, 506, 755
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	3 cut(s)	156, 229, 417
BlsI	GCNGC	3 cut(s)	157, 230, 418
BmeRI	GACNNNNNGTC	1 cut(s)	519
BmeT110I	CYCGRG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	3 cut(s)	218, 740, 761
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 654
Bse1I	ACTGG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	382, 759
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	398, 654
BseMII	CTCAG	3 cut(s)	290, 294, 469
BseNI	ACTGG	1 cut(s)	723
BseRI	GAGGAG	2 cut(s)	92, 500
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	174, 392
BslI	CCNNNNNNNGG	2 cut(s)	398, 654
BsmAI	GTCTC	3 cut(s)	50, 506, 755
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	120, 241, 460
BspACI	CCGC	5 cut(s)	129, 156, 162, 228, 746
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	289, 295, 468, 810
BspHI	TCATGA	2 cut(s)	73, 247
BspLI	GGNNCC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	120, 241, 460
BssT1I	CCWWGG	1 cut(s)	192
Bst6I	CTCTTC	3 cut(s)	111, 477, 561
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	276, 303, 455, 797
BstF5I	GGATG	2 cut(s)	382, 759
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	3 cut(s)	123, 244, 463
BstMAI	GTCTC	3 cut(s)	50, 506, 755
BstMBI	GATC	3 cut(s)	120, 241, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	382, 759
CaiI	CAGNNNCTG	1 cut(s)	718
CciI	TCATGA	2 cut(s)	73, 247
CfoI	GCGC	1 cut(s)	690
CviAII	CATG	7 cut(s)	74, 152, 211, 248, 530, 554, 653
DdeI	CTNAG	4 cut(s)	276, 303, 455, 797
DpnI	GATC	3 cut(s)	122, 243, 462
DpnII	GATC	3 cut(s)	120, 241, 460
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	519
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	111, 477, 561
Eam1105I	GACNNNNNGTC	1 cut(s)	519
EarI	CTCTTC	3 cut(s)	111, 477, 561
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
FatI	CATG	7 cut(s)	73, 151, 210, 247, 529, 553, 652
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	156, 229, 417
FokI	GGATG	2 cut(s)	389, 766
Fsp4HI	GCNGC	3 cut(s)	156, 229, 417
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	3 cut(s)	156, 229, 417
GsuI	CTGGAG	3 cut(s)	218, 740, 761
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	174, 392
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HindIII	AAGCTT	2 cut(s)	607, 624
HinfI	GANTC	5 cut(s)	179, 299, 335, 763, 774
HpaII	CCGG	2 cut(s)	174, 392
Hpy188I	TCNGA	5 cut(s)	58, 304, 340, 458, 800
Hpy188III	TCNNGA	7 cut(s)	74, 124, 248, 511, 563, 703, 778
HpyAV	CCTTC	3 cut(s)	613, 718, 751
HpyCH4IV	ACGT	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
HpyF3I	CTNAG	4 cut(s)	276, 303, 455, 797
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
HspAI	GCGC	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	120, 241, 460
LpnPI	CCDG	9 cut(s)	187, 248, 405, 423, 548, 651, 704, 716, 791
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	3 cut(s)	122, 243, 462
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	3 cut(s)	120, 241, 460
MboII	GAAGA	7 cut(s)	128, 177, 362, 477, 491, 494, 578
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
MlyI	GAGTC	3 cut(s)	188, 757, 768
MseI	TTAA	2 cut(s)	105, 344
MslI	CAYNNNNRTG	2 cut(s)	249, 528
MspI	CCGG	2 cut(s)	174, 392
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 685
NdeII	GATC	3 cut(s)	120, 241, 460
NlaIII	CATG	7 cut(s)	77, 155, 214, 251, 533, 557, 656
NlaIV	GGNNCC	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	577
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	2 cut(s)	73, 247
PfeI	GAWTC	2 cut(s)	299, 335
PkrI	GCNGC	3 cut(s)	157, 230, 418
PleI	GAGTC	3 cut(s)	187, 757, 768
PpsI	GAGTC	3 cut(s)	187, 757, 768
Ppu21I	YACGTR	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	718
RseI	CAYNNNNRTG	2 cut(s)	249, 528
SaqAI	TTAA	2 cut(s)	105, 344
SatI	GCNGC	3 cut(s)	156, 229, 417
Sau3AI	GATC	3 cut(s)	120, 241, 460
SchI	GAGTC	3 cut(s)	188, 757, 768
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	509
SfuI	TTCGAA	1 cut(s)	577
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	249, 528
SmlI	CTYRAG	2 cut(s)	509, 765
SmoI	CTYRAG	2 cut(s)	509, 765
Sse9I	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
SsiI	CCGC	5 cut(s)	129, 156, 162, 228, 746
SspI	AATATT	2 cut(s)	100, 257
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	5 cut(s)	361, 463, 510, 577, 772
TasI	AATT	7 cut(s)	14, 308, 341, 386, 448, 579, 698
TauI	GCSGC	2 cut(s)	158, 231
TfiI	GAWTC	2 cut(s)	299, 335
Tru1I	TTAA	2 cut(s)	105, 344
Tru9I	TTAA	2 cut(s)	105, 344
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	6 cut(s)	17, 267, 348, 363, 641, 770
XapI	RAATTY	3 cut(s)	386, 448, 698
XhoI	CTCGAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.