Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000039.1

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Forward (+)

49936 .. 50796

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000039.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaaagctcacaatcaaggtctaaaaaatcatgcaagtaccgcactaggatgaacaatagccaattagacgagaacgattgttgtgatgatggtctcgtcttttctgatgatattgattatcatgaggagagaacaaggaaactcaatattcttaaaaagaaagaagagaccgtgagcggtgtaaagtcaatcgcactccatgccgccaccgcaatcccctccggcgagtcatcttcccccaaggttgtcttatcatacatggacacctttgtctgcggcctccagcttgatcatcatgatgaatattctcacaaccataagcctcagtttctaaagcaagaagctgattctgagaaattagaagcaaaagacgatgctgatgaatcagaattaaatgaagatggaaatcgagtggtaatcaaggatgagaaaaaatttccggctgatggaactatacgtgaagctgcgattggaaaagggttatctggtgccctaaatttgctcagagatcgaagaaccctaacagaagaagaggagggcaagaaaaagagaaagctcgagatgacaagtcgtcatcatgtagctaaacctaaaaggtttcatgattatcaggaagaggatattcgaattgagagaaccgatgagtttgggggaagcttgacagagaaggaagcttataagagattttgtcatacctttcatgggaaaaaatctggggcaaggaagcaagaaaagagcatcaaaaaatgccagagagaacagaaactggagaaggatacaccatcactctttgcggagaggatgaaggagactcaagctcgactccagacaccctatattgtcctcagaggaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

286

Amino Acids

32.94

Weight (kDa)

8.09

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	6 cut(s)	43, 180, 207, 213, 279, 797
AcsI	RAATTY	2 cut(s)	437, 499
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	449, 705
AhdI	GACNNNNNGTC	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	9 cut(s)	9, 289, 347, 467, 559, 587, 660, 677, 821
AluI	AGCT	9 cut(s)	9, 289, 347, 467, 559, 587, 660, 677, 821
Alw26I	GTCTC	3 cut(s)	101, 164, 806
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	437, 499
AsuII	TTCGAA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	4 cut(s)	86, 398, 443, 793
BciVI	GTATCC	1 cut(s)	772
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	3 cut(s)	101, 164, 806
BfaI	CTAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	772
BisI	GCNGC	3 cut(s)	207, 280, 468
BlsI	GCNGC	3 cut(s)	208, 281, 469
BmeRI	GACNNNNNGTC	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	493
BmsI	GCATC	2 cut(s)	367, 750
BpmI	CTGGAG	3 cut(s)	269, 791, 812
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	801
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	101, 164
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 705
Bse1I	ACTGG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	57, 433, 810
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	449, 705
BseMII	CTCAG	3 cut(s)	341, 345, 520
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	2 cut(s)	143, 551
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	225, 443
BslI	CCNNNNNNNGG	2 cut(s)	449, 705
BsmAI	GTCTC	3 cut(s)	101, 164, 806
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	2 cut(s)	101, 164
BsoBI	CYCGRG	1 cut(s)	560
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	292, 511
BspACI	CCGC	6 cut(s)	43, 180, 207, 213, 279, 797
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	4 cut(s)	340, 346, 519, 861
BspHI	TCATGA	3 cut(s)	124, 298, 604
BspLI	GGNNCC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	101, 164
BsrBI	CCGCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	774
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	292, 511
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	3 cut(s)	162, 528, 612
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	628
BstDEI	CTNAG	4 cut(s)	327, 354, 506, 848
BstF5I	GGATG	3 cut(s)	57, 433, 810
BstKTI	GATC	2 cut(s)	295, 514
BstMAI	GTCTC	3 cut(s)	101, 164, 806
BstMBI	GATC	2 cut(s)	292, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	57, 433, 810
CaiI	CAGNNNCTG	1 cut(s)	769
CciI	TCATGA	3 cut(s)	124, 298, 604
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	8 cut(s)	33, 125, 203, 262, 299, 581, 605, 704
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	327, 354, 506, 848
DpnI	GATC	2 cut(s)	294, 513
DpnII	GATC	2 cut(s)	292, 511
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	1 cut(s)	573
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	162, 528, 612
Eam1105I	GACNNNNNGTC	1 cut(s)	573
EarI	CTCTTC	3 cut(s)	162, 528, 612
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	101, 164
Eco88I	CYCGRG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	8 cut(s)	36, 128, 206, 265, 302, 584, 608, 707
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	8 cut(s)	32, 124, 202, 261, 298, 580, 604, 703
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	207, 280, 468
FokI	GGATG	3 cut(s)	64, 440, 817
Fsp4HI	GCNGC	3 cut(s)	207, 280, 468
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	207, 280, 468
GsuI	CTGGAG	3 cut(s)	269, 791, 812
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	225, 443
Hin1II	CATG	8 cut(s)	36, 128, 206, 265, 302, 584, 608, 707
HindIII	AAGCTT	2 cut(s)	658, 675
HinfI	GANTC	5 cut(s)	230, 350, 386, 814, 825
HpaII	CCGG	2 cut(s)	225, 443
Hpy188I	TCNGA	5 cut(s)	109, 355, 391, 509, 851
Hpy188III	TCNNGA	6 cut(s)	125, 299, 562, 605, 614, 829
HpyAV	CCTTC	3 cut(s)	664, 769, 802
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
HpyF3I	CTNAG	4 cut(s)	327, 354, 506, 848
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	8 cut(s)	36, 128, 206, 265, 302, 584, 608, 707
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	292, 511
LpnPI	CCDG	9 cut(s)	238, 299, 456, 474, 599, 702, 755, 767, 842
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	2 cut(s)	367, 750
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	460
MalI	GATC	2 cut(s)	294, 513
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	2 cut(s)	292, 511
MboII	GAAGA	7 cut(s)	179, 228, 413, 528, 542, 545, 629
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	6 cut(s)	65, 359, 392, 437, 499, 630
MlyI	GAGTC	3 cut(s)	239, 808, 819
MseI	TTAA	2 cut(s)	156, 395
MslI	CAYNNNNRTG	2 cut(s)	50, 300
MspI	CCGG	2 cut(s)	225, 443
MwoI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
NdeII	GATC	2 cut(s)	292, 511
NlaIII	CATG	8 cut(s)	36, 128, 206, 265, 302, 584, 608, 707
NlaIV	GGNNCC	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	560
PagI	TCATGA	3 cut(s)	124, 298, 604
PfeI	GAWTC	2 cut(s)	350, 386
PkrI	GCNGC	3 cut(s)	208, 281, 469
PleI	GAGTC	3 cut(s)	238, 808, 819
PpsI	GAGTC	3 cut(s)	238, 808, 819
Ppu21I	YACGTR	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	681
PspN4I	GGNNCC	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	2 cut(s)	50, 300
SaqAI	TTAA	2 cut(s)	156, 395
SatI	GCNGC	3 cut(s)	207, 280, 468
Sau3AI	GATC	2 cut(s)	292, 511
SchI	GAGTC	3 cut(s)	239, 808, 819
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	2 cut(s)	367, 750
Sfr274I	CTCGAG	1 cut(s)	560
SfuI	TTCGAA	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	2 cut(s)	50, 300
SmlI	CTYRAG	2 cut(s)	560, 816
SmoI	CTYRAG	2 cut(s)	560, 816
Sse9I	AATT	6 cut(s)	65, 359, 392, 437, 499, 630
SsiI	CCGC	6 cut(s)	43, 180, 207, 213, 279, 797
SspI	AATATT	2 cut(s)	151, 308
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	5 cut(s)	412, 514, 561, 628, 823
TasI	AATT	6 cut(s)	65, 359, 392, 437, 499, 630
TauI	GCSGC	2 cut(s)	209, 282
TfiI	GAWTC	2 cut(s)	350, 386
Tru1I	TTAA	2 cut(s)	156, 395
Tru9I	TTAA	2 cut(s)	156, 395
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	7 cut(s)	68, 318, 399, 414, 593, 692, 821
XapI	RAATTY	2 cut(s)	437, 499
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.