RLG00000001196

U4 U6.U5 tri-snRNP-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012539
Physical Location & Seq
Reverse (-)
11783613 .. 11784047
435 bp
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UTR
Exon/CDS
Intron
RLM00000001196

Sequence Viewer

Length: 435 bp
ATGTCAGATTGTTCTCATGGAACTATACGTGAAGCTGCGATTGGAAAAGGGTTATCTGGTGCCCTAAATTTGCTCAGAGATCGAAGAACCCTAACCGAAGAAGAGGAGTGCAAGAAAAAGAGAAAGCTCGAGACGACAAGTCGTCATCATGTAGCTAGTAGGTTACATGATTATCAGGAAGAGGATATTCGAATTGAGAGAACCGATGAGTTTGGAGGAAGCTTGACAGAGAAGGAAGCTCATAAGAGATTTTTTCATACCTTTCATGGGAAAAAATCTGGGGCAAGGAAGCAAGAAAAGCGCATAAAAAAAATGCCAGAGAGAACAGAAACTGGAGAAGGATGCACCATCGCTCTTTGTGGAGAGGATGAAGGAGACTCAAGCTCGACTCCAGACACCCTATATTGTCCTCAGAGGAAAATAAATCTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
SART-1

Protein Analysis

145

Amino Acids

16.42

Weight (kDa)

8.27

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SART-1 PF03343 62 - 107 1.7e-13 SART-1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 267
AhdI GACNNNNNGTC 2 cut(s) 138, 141
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 6 cut(s) 35, 127, 155, 222, 239, 384
AluI AGCT 6 cut(s) 35, 127, 155, 222, 239, 384
Alw26I GTCTC 2 cut(s) 125, 369
AlwNI CAGNNNCTG 1 cut(s) 332
Ama87I CYCGRG 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 67
AspLEI GCGC 1 cut(s) 303
AsuII TTCGAA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 125, 369
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmeRI GACNNNNNGTC 2 cut(s) 138, 141
BmeT110I CYCGRG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 332
BpmI CTGGAG 2 cut(s) 354, 375
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 364
BsaAI YACGTR 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 347, 373
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 88, 425
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 125, 369
BsmBI CGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 128
Bsp119I TTCGAA 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 87, 424
BspLI GGNNCC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 337
BssMI GATC 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 96, 174
BstBAI YACGTR 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 74, 411
BstF5I GGATG 2 cut(s) 347, 373
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 125, 369
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 347, 373
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 1 cut(s) 303
CviAII CATG 4 cut(s) 17, 149, 167, 266
CviJI RGCY 6 cut(s) 35, 127, 155, 222, 239, 384
CviKI_1 RGCY 6 cut(s) 35, 127, 155, 222, 239, 384
DdeI CTNAG 2 cut(s) 74, 411
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DriI GACNNNNNGTC 2 cut(s) 138, 141
Eam1104I CTCTTC 2 cut(s) 96, 174
Eam1105I GACNNNNNGTC 2 cut(s) 138, 141
EarI CTCTTC 2 cut(s) 96, 174
Eco88I CYCGRG 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 4 cut(s) 20, 152, 170, 269
FaiI YATR 9 cut(s) 18, 26, 150, 168, 243, 258, 267, 305, 403
FatI CATG 4 cut(s) 16, 148, 166, 265
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 354, 380
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 354, 375
HhaI GCGC 1 cut(s) 303
Hin1II CATG 4 cut(s) 20, 152, 170, 269
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 2 cut(s) 377, 388
Hpy188I TCNGA 3 cut(s) 7, 77, 414
Hpy188III TCNNGA 3 cut(s) 130, 176, 392
HpyAV CCTTC 3 cut(s) 226, 332, 365
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 111, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 74, 411
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 4 cut(s) 20, 152, 170, 269
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 42, 161, 264, 318, 330, 405
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 332
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 4 cut(s) 96, 110, 113, 191
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 67, 192
MlyI GAGTC 2 cut(s) 371, 382
MnlI CCTC 6 cut(s) 97, 175, 209, 358, 408, 420
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 1 cut(s) 79
NlaIII CATG 4 cut(s) 20, 152, 170, 269
NlaIV GGNNCC 1 cut(s) 61
NspV TTCGAA 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 128
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 371, 382
PpsI GAGTC 2 cut(s) 371, 382
Ppu21I YACGTR 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 332
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 2 cut(s) 371, 382
SduI GDGCHC 1 cut(s) 64
SetI ASST 9 cut(s) 31, 37, 129, 157, 164, 224, 241, 263, 386
SfaNI GCATC 1 cut(s) 332
Sfr274I CTCGAG 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 379
SmoI CTYRAG 2 cut(s) 128, 379
Sse9I AATT 2 cut(s) 67, 192
SspMI CTAG 1 cut(s) 156
TaiI ACGT 1 cut(s) 31
TaqI TCGA 4 cut(s) 82, 129, 190, 386
TasI AATT 2 cut(s) 67, 192
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 245, 254, 384
XapI RAATTY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.