Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Reverse (-)

10047984 .. 10053180

Gene Structure 5197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAAGCTCACAATCAAGGTCTCAAAAACCATGCAAGTATCGCACTAGGATGAACAATAGCCAATTAGAAGAGAATGATTGTTGTGATCCTTTCGATGATATTGATTATCATGAGGAGAGAACAAGGAAACTCAATATTCTTAAAAGAAAGAAGAAGAGACGTGACCGGTGTAAAGTCAATCGCACTCCATGCCGTCGCCACAATCCCCTCCGCGAGTCGTCTTCCCCCAAGGTTGTCTTATCATACATGGACACCTTGGTCTGCGGCCTCCAGCTTGATCATCATGATGAATATTCTCACAACCATAAGCCTCAGTTTCTAAAGCAAGAAGCTGATTTCGTTGTTTTATTGAGAGAACAGAAACTGGAGAAGGATGCACCATCACTCTTTGTGGAGAGGATGAAGGAGACTCAAGCTCGACTCCAGACACCCTATATTGGAAGCAAGACATTTGATGAATATGATGATGAAGACACAATCCTCACAAGCACCACTGATAAAAATATCGGCAGCCAATTTAATTGCTGTCCTACAAGGAGGTACTCTCTAATTGGTTGTGCTTGGTTGGTTAATTTTGGAATTCCTTGGTTGATTCAGGGACGCTCTTGTGGTTTATTCAAGTGGTGCAATGAGGCCTACTGTGTGCCAGCTGCTGGTATCCTTCCAAGCTATGTGGGAAGTCTTTCACTTATCGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

27.28

Weight (kDa)

8.4

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccII	CGCG	1 cut(s)	216
AciI	CCGC	2 cut(s)	214, 267
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	582
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	440, 656
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	622
AjiI	CACGTC	1 cut(s)	164
AluBI	AGCT	6 cut(s)	9, 277, 335, 419, 653, 672
AluI	AGCT	6 cut(s)	9, 277, 335, 419, 653, 672
Alw26I	GTCTC	3 cut(s)	27, 154, 404
AlwI	GGATC	1 cut(s)	83
AlwNI	CAGNNNCTG	2 cut(s)	367, 656
AoxI	GGCC	2 cut(s)	268, 636
ApeKI	GCWGC	2 cut(s)	513, 653
ApoI	RAATTY	1 cut(s)	582
AsiGI	ACCGGT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	685
BbsI	GAAGAC	2 cut(s)	216, 480
BbvI	GCAGC	2 cut(s)	525, 640
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	27, 154, 404
BfaI	CTAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	3 cut(s)	268, 514, 654
BlsI	GCNGC	3 cut(s)	269, 515, 655
BmgBI	CACGTC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	216, 480
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpmI	CTGGAG	3 cut(s)	257, 389, 410
BpuEI	CTTGAG	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	231, 258, 587
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	440, 656
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	231, 258, 587
BseGI	GGATG	3 cut(s)	57, 382, 408
BseLI	CCNNNNNNNGG	2 cut(s)	440, 656
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	525, 640
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	270, 638
BshTI	ACCGGT	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	440, 656
BsmAI	GTCTC	3 cut(s)	27, 154, 404
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	270, 638
Bso31I	GGTCTC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	88, 280
BspACI	CCGC	2 cut(s)	214, 267
BspANI	GGCC	2 cut(s)	270, 638
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	216
BspHI	TCATGA	2 cut(s)	112, 286
BspPI	GGATC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	231, 258, 587
BssMI	GATC	2 cut(s)	88, 280
BssT1I	CCWWGG	3 cut(s)	231, 258, 587
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	2 cut(s)	66, 152
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	57, 382, 408
BstFNI	CGCG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	91, 283
BstMAI	GTCTC	3 cut(s)	27, 154, 404
BstMBI	GATC	2 cut(s)	88, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 192
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	525, 640
BstV2I	GAAGAC	2 cut(s)	216, 480
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	270, 638
BtrI	CACGTC	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	57, 382, 408
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	651
CaiI	CAGNNNCTG	2 cut(s)	367, 656
CciI	TCATGA	2 cut(s)	112, 286
Cfr10I	RCCGGY	1 cut(s)	168
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	544
CspAI	ACCGGT	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	5 cut(s)	33, 113, 192, 250, 287
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	90, 282
DpnII	GATC	2 cut(s)	88, 280
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	66, 152
EarI	CTCTTC	2 cut(s)	66, 152
Eco130I	CCWWGG	3 cut(s)	231, 258, 587
Eco147I	AGGCCT	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	582
EcoT14I	CCWWGG	3 cut(s)	231, 258, 587
ErhI	CCWWGG	3 cut(s)	231, 258, 587
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	5 cut(s)	36, 116, 195, 253, 290
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	5 cut(s)	32, 112, 191, 249, 286
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	268, 514, 654
FokI	GGATG	3 cut(s)	64, 389, 415
Fsp4HI	GCNGC	3 cut(s)	268, 514, 654
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	268, 514, 654
GsuI	CTGGAG	3 cut(s)	257, 389, 410
HaeIII	GGCC	2 cut(s)	270, 638
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	612
Hin1II	CATG	5 cut(s)	36, 116, 195, 253, 290
HinfI	GANTC	4 cut(s)	218, 412, 423, 595
HpaII	CCGG	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	113, 287, 427
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	367, 400, 674
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	36, 380, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 192
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	5 cut(s)	36, 116, 195, 253, 290
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	88, 280
LpnPI	CCDG	7 cut(s)	182, 287, 353, 440, 584, 642, 663
Lsp1109I	GCAGC	2 cut(s)	525, 640
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	90, 282
MboI	GATC	2 cut(s)	88, 280
MboII	GAAGA	5 cut(s)	83, 166, 169, 216, 485
MluCI	AATT	6 cut(s)	65, 518, 523, 552, 574, 582
MlyI	GAGTC	3 cut(s)	227, 406, 417
MnlI	CCTC	8 cut(s)	109, 221, 281, 324, 393, 494, 534, 628
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	3 cut(s)	144, 522, 573
MslI	CAYNNNNRTG	2 cut(s)	50, 288
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	42, 192
NdeII	GATC	2 cut(s)	88, 280
NlaIII	CATG	5 cut(s)	36, 116, 195, 253, 290
NmuCI	GTSAC	1 cut(s)	164
PagI	TCATGA	2 cut(s)	112, 286
PceI	AGGCCT	1 cut(s)	638
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	595
PflMI	CCANNNNNTGG	1 cut(s)	656
PinAI	ACCGGT	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	269, 515, 655
PleI	GAGTC	3 cut(s)	226, 406, 417
PpsI	GAGTC	3 cut(s)	226, 406, 417
PstNI	CAGNNNCTG	2 cut(s)	367, 656
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
RseI	CAYNNNNRTG	2 cut(s)	50, 288
SaqAI	TTAA	3 cut(s)	144, 522, 573
SatI	GCNGC	3 cut(s)	268, 514, 654
Sau3AI	GATC	2 cut(s)	88, 280
SchI	GAGTC	3 cut(s)	227, 406, 417
SfaNI	GCATC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	50, 288
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	65, 518, 523, 552, 574, 582
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	2 cut(s)	214, 267
SspI	AATATT	2 cut(s)	139, 296
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	638
StyI	CCWWGG	3 cut(s)	231, 258, 587
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	96, 421, 696
TasI	AATT	6 cut(s)	65, 518, 523, 552, 574, 582
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	3 cut(s)	144, 522, 573
Tru9I	TTAA	3 cut(s)	144, 522, 573
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	513, 653
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	5 cut(s)	68, 306, 419, 474, 486
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	656
XapI	RAATTY	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.