Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012539

Physical Location & Seq

Genomic Coordinates Reverse (-)

10285795 .. 10286391

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAAGCTCACAATCAAGGTCTCAAAAATCATGCAAGTATCGCACTAGGATGAACAATAGCCAATTAGACGAGAACGATTGTTGTGATGATGGTCTCGTCTTTTCTGATGATATTGATTATCATGAGGAGAGAACAAGGAAACTCAATATTCTTAAAAAGAAAGAAGAGACCGTGAGCGGTGTAAAGTCAATCGCACTCCATGCCGCCACCGCAATCCCCTCCGGCGAGTCATCTTCCCCCAAGGTTGTCTTATCATACATGGACACCTTTGTCTGCGGCCTCCAGCTTGATCATCATGATGAATATTCTCACAACCATAAGCCTCAGTTTCTAAAGCAAGAAGCTGATTCTGAGAAATTAGAAGCAAAAGACGATGCTGATGAATCAGAATTAAATGAAGATGGAAATCGAGTGGTAATCAAGGATGAGAAAAAATTTCCGGCTGATGGAACTATACGTGAAGCTGCGATTGGAAAAGGGTTATCTGGTGCCCTAAATTTGCTCAGAGATCAAAGAACCCTAACCGAAGAAGAGGAGTGCAAGAAAAAGAGAAAGCTCGAGACGACAAGTCGTCATCATGTAGCTAGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000481 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008380 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009933 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010467 GO:0010588 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0030532 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048528 GO:0048532 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090567 GO:0090696 GO:0090698 GO:0097525 GO:0097526 GO:0099402 GO:0120114 GO:1901360 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SART-1

Protein Analysis

198

Amino Acids

22.41

Weight (kDa)

5.66

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SART-1	PF03343	34 - 188	2.8e-07	SART-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14700 AT3G14700
fragaria_vesca	FvH4_5g34310
malus_domestica	MD07G1289000.v1.1
rosa_chinensis	RchiOBHm_Chr7g0234901
rosa_laevigata	RLG00000001196 RLG00000001197 RLG00000001206
rosa_multiflora	Rmu_sc0000039.1_g000006 Rmu_sc0000768.1_g000040
rosa_roxburghii	Rroxscaffold_3G00226500 Rroxscaffold_3G00226650
rosa_rugosa	Rorug07G0286100
rosa_samantha	Rh7AG440800 Rh7BG413700 Rh7CG462600 Rh7DG430600
rosa_wichuraiana	Rw7G036640 Rw7G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	4 cut(s)	180, 207, 213, 279
AcsI	RAATTY	2 cut(s)	437, 499
AfiI	CCNNNNNNNGG	1 cut(s)	449
AhdI	GACNNNNNGTC	2 cut(s)	570, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	6 cut(s)	9, 289, 347, 467, 559, 587
AluI	AGCT	6 cut(s)	9, 289, 347, 467, 559, 587
Alw26I	GTCTC	4 cut(s)	27, 101, 164, 557
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	437, 499
AvaI	CYCGRG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	86, 398, 443
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	4 cut(s)	27, 101, 164, 557
BfaI	CTAG	2 cut(s)	48, 588
BisI	GCNGC	3 cut(s)	207, 280, 468
BlsI	GCNGC	3 cut(s)	208, 281, 469
BmeRI	GACNNNNNGTC	2 cut(s)	570, 573
BmeT110I	CYCGRG	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	493
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	3 cut(s)	27, 101, 164
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	57, 433
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	3 cut(s)	341, 345, 520
BseRI	GAGGAG	2 cut(s)	143, 551
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	225, 443
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	4 cut(s)	27, 101, 164, 557
BsmBI	CGTCTC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	3 cut(s)	27, 101, 164
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	292, 511
BspACI	CCGC	4 cut(s)	180, 207, 213, 279
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	340, 346, 519
BspHI	TCATGA	2 cut(s)	124, 298
BspLI	GGNNCC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	3 cut(s)	27, 101, 164
BsrBI	CCGCTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	292, 511
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	162, 528
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	327, 354, 506
BstF5I	GGATG	2 cut(s)	57, 433
BstKTI	GATC	2 cut(s)	295, 514
BstMAI	GTCTC	4 cut(s)	27, 101, 164, 557
BstMBI	GATC	2 cut(s)	292, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	57, 433
CciI	TCATGA	2 cut(s)	124, 298
CviAII	CATG	6 cut(s)	33, 125, 203, 262, 299, 581
DdeI	CTNAG	3 cut(s)	327, 354, 506
DpnI	GATC	2 cut(s)	294, 513
DpnII	GATC	2 cut(s)	292, 511
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	2 cut(s)	570, 573
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	162, 528
Eam1105I	GACNNNNNGTC	2 cut(s)	570, 573
EarI	CTCTTC	2 cut(s)	162, 528
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	3 cut(s)	27, 101, 164
Eco88I	CYCGRG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	6 cut(s)	36, 128, 206, 265, 302, 584
FaiI	YATR	9 cut(s)	34, 126, 204, 259, 263, 300, 321, 458, 582
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	6 cut(s)	32, 124, 202, 261, 298, 580
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	207, 280, 468
FokI	GGATG	2 cut(s)	64, 440
Fsp4HI	GCNGC	3 cut(s)	207, 280, 468
FspBI	CTAG	2 cut(s)	48, 588
GluI	GCNGC	3 cut(s)	207, 280, 468
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	225, 443
Hin1II	CATG	6 cut(s)	36, 128, 206, 265, 302, 584
HinfI	GANTC	3 cut(s)	230, 350, 386
HpaII	CCGG	2 cut(s)	225, 443
Hpy188I	TCNGA	4 cut(s)	109, 355, 391, 509
Hpy188III	TCNNGA	3 cut(s)	125, 299, 562
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	36, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
HpyF3I	CTNAG	3 cut(s)	327, 354, 506
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	6 cut(s)	36, 128, 206, 265, 302, 584
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	292, 511
LpnPI	CCDG	4 cut(s)	238, 299, 456, 474
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	48, 588
MaeII	ACGT	1 cut(s)	460
MalI	GATC	2 cut(s)	294, 513
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	2 cut(s)	292, 511
MboII	GAAGA	5 cut(s)	179, 228, 413, 542, 545
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	5 cut(s)	65, 359, 392, 437, 499
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	121, 232, 293, 336, 529
MseI	TTAA	2 cut(s)	156, 395
MslI	CAYNNNNRTG	2 cut(s)	50, 300
MspI	CCGG	2 cut(s)	225, 443
MwoI	GCNNNNNNNGC	3 cut(s)	42, 203, 212
NdeII	GATC	2 cut(s)	292, 511
NlaIII	CATG	6 cut(s)	36, 128, 206, 265, 302, 584
NlaIV	GGNNCC	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	560
PagI	TCATGA	2 cut(s)	124, 298
PfeI	GAWTC	2 cut(s)	350, 386
PkrI	GCNGC	3 cut(s)	208, 281, 469
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	493
RseI	CAYNNNNRTG	2 cut(s)	50, 300
SaqAI	TTAA	2 cut(s)	156, 395
SatI	GCNGC	3 cut(s)	207, 280, 468
Sau3AI	GATC	2 cut(s)	292, 511
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	2 cut(s)	50, 300
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	5 cut(s)	65, 359, 392, 437, 499
SsiI	CCGC	4 cut(s)	180, 207, 213, 279
SspI	AATATT	2 cut(s)	151, 308
SspMI	CTAG	2 cut(s)	48, 588
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	412, 561
TasI	AATT	5 cut(s)	65, 359, 392, 437, 499
TauI	GCSGC	2 cut(s)	209, 282
TfiI	GAWTC	2 cut(s)	350, 386
Tru1I	TTAA	2 cut(s)	156, 395
Tru9I	TTAA	2 cut(s)	156, 395
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	68, 318, 399, 414
XapI	RAATTY	2 cut(s)	437, 499
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	2 cut(s)	48, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.