Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

5020461 .. 5023146

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAGCTTATCATCGCCAACCAGTGCTTGTAGCTCGTCCAGATGTTACTCCTCGGGATTATCGTTTCCGATTGGATTTGGATCGAATCCCATCAATGTGGGATTGGTTTGTTACCCAAAAAGATACAGTATTGCTGCTCGGAAGTTCGTAGTGGCTTGCTCCTCCTCCTCTTCCGATCCACTTTTGGTTAAGGCTGCAAAAGGGCAAGCCATAAGTCGTCCTCCAGCTTGGATGATGAGGCAAGCAGGAAGGTATATGGCTGTTTACCAAAAGCTCGCCAAGAAACATCCGTCCTTCAGAGAGAGATCAGAGAACACTGATCTAATAGTGGAAATCTCTTTGCAGCCTTGGCAAGCATTCAGACCAGACGGTGTCATCATTTTCTCTGACATCCTCACCCCTTTACCTGCATTCGGTGTCCCTTTTGATATTGAAGAGGTAAAAGGTCCTGTAATCCAATCTCCTATCCGAACTGAAGAAGATATGAAGAGATTACATCCCATTGATTTCGAGAAACTACAGTTTGTTGGAGATTCTCTCAAGATTTTGAGACGAGAGGTTGGGGAACATGCTGCGGTGTTGGGTTTCGTTGGAGCGCCTTGGACAATTGCAACATATATTGTTGAAGGAGGAACAACTCGAACATATACAGTCATAAAGAATATGTGCCACACTGCACCAGATGTATTGAGAGCTCTATTATCTCATTTAACCAAGGCCATTACCGAGTATGTGGTTTACCAAGTTGAGCACGGAGCTCACTGCATACAAATATTCGATTCCTGGGGTGGCCAACTGACTCCGGAGATGTGGGAGCGCTGGTCCAAACCATACATTGAAGAGATCATACATGCTGTAAAGAAAAGATGTCCAGATACGCCGATAGTTTTCTACATCAATGGAAATGGTGGCCTTCTTGAGCGAATGAAAGGAACTGGAGCTGATGTTATTGGACTTGACTGGACTGTAGATATGGCTGATGGAAGGAGGCGATTGGGAAGCGAGGTAAGTGTGCAGGGAAATGTTGATCCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAGAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCATTTCTTTGAAACCGCTAGAAACTTGGATTACCAAACACTTTTCCAAAATCATGTTCCTGCAGAAAAAGCTGAACCTGAATTGGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

418

Amino Acids

46.25

Weight (kDa)

6.64

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	60 - 396	6.4e-120	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	3 cut(s)	575, 1049, 1179
AclWI	GGATC	3 cut(s)	88, 170, 1022
AcoI	YGGCCR	1 cut(s)	790
AcuI	CTGAAG	2 cut(s)	280, 495
AfeI	AGCGCT	1 cut(s)	818
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	434, 626, 839, 1076, 1175
AhdI	GACNNNNNGTC	1 cut(s)	1130
AjnI	CCWGG	1 cut(s)	782
AjuI	GAANNNNNNNTTGG	2 cut(s)	1203, 1235
AluBI	AGCT	9 cut(s)	6, 33, 227, 274, 695, 758, 941, 1034, 1235
AluI	AGCT	9 cut(s)	6, 33, 227, 274, 695, 758, 941, 1034, 1235
Alw21I	GWGCWC	3 cut(s)	697, 753, 760
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	88, 170, 1022
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	802
Aor51HI	AGCGCT	1 cut(s)	818
AoxI	GGCC	3 cut(s)	717, 790, 910
ApeKI	GCWGC	4 cut(s)	134, 194, 343, 572
AspLEI	GCGC	2 cut(s)	598, 819
AspS9I	GGNCC	3 cut(s)	446, 822, 1097
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	3 cut(s)	446, 822, 1097
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	2 cut(s)	697, 760
BarI	GAAGNNNNNNTAC	2 cut(s)	831, 863
Bbv12I	GWGCWC	3 cut(s)	697, 753, 760
BbvI	GCAGC	4 cut(s)	121, 181, 355, 559
BccI	CCATC	2 cut(s)	98, 974
BceAI	ACGGC	1 cut(s)	1142
BciT130I	CCWGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	1121, 1182
BfmI	CTRYAG	3 cut(s)	518, 966, 1224
BfoI	RGCGCY	2 cut(s)	599, 820
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	4 cut(s)	135, 195, 344, 573
BlsI	GCNGC	4 cut(s)	136, 196, 345, 574
Bme1390I	CCNGG	1 cut(s)	784
Bme18I	GGWCC	3 cut(s)	446, 822, 1097
BmeRI	GACNNNNNGTC	1 cut(s)	1130
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	446, 822, 1097
BmrFI	CCNGG	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	2 cut(s)	207, 957
BpuEI	CTTGAG	2 cut(s)	524, 938
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	6 cut(s)	51, 347, 599, 714, 783, 1158
BsaWI	WCCGGW	1 cut(s)	802
BsaXI	ACNNNNNCTCC	4 cut(s)	806, 836, 930, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	3 cut(s)	21, 940, 965
Bse8I	GATNNNNATC	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	784
BseDI	CCNNGG	6 cut(s)	51, 347, 599, 714, 783, 1158
BseGI	GGATG	4 cut(s)	237, 286, 390, 496
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseNI	ACTGG	3 cut(s)	21, 940, 965
BseRI	GAGGAG	4 cut(s)	40, 151, 154, 157
BseXI	GCAGC	4 cut(s)	121, 181, 355, 559
BsgI	GTGCAG	2 cut(s)	660, 1034
BshFI	GGCC	3 cut(s)	719, 792, 912
BsiHKAI	GWGCWC	3 cut(s)	697, 753, 760
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	2 cut(s)	404, 1156
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	544
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	404, 1156
BsmI	GAATGC	2 cut(s)	356, 410
BsnI	GGCC	3 cut(s)	719, 792, 912
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	3 cut(s)	697, 753, 760
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
BspACI	CCGC	3 cut(s)	575, 1049, 1179
BspANI	GGCC	3 cut(s)	719, 792, 912
BspEI	TCCGGA	1 cut(s)	802
BspMAI	CTGCAG	1 cut(s)	1228
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	88, 170, 1022
BsrI	ACTGG	3 cut(s)	21, 940, 965
BssECI	CCNNGG	6 cut(s)	51, 347, 599, 714, 783, 1158
BssMI	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
BssT1I	CCWWGG	3 cut(s)	347, 599, 714
Bst2UI	CCWGG	1 cut(s)	784
Bst4CI	ACNGT	6 cut(s)	128, 371, 522, 652, 967, 1130
Bst6I	CTCTTC	4 cut(s)	175, 429, 482, 834
BstC8I	GCNNGC	5 cut(s)	157, 207, 243, 276, 354
BstDSI	CCRYGG	1 cut(s)	1158
BstF5I	GGATG	4 cut(s)	237, 286, 390, 496
BstH2I	RGCGCY	2 cut(s)	599, 820
BstHHI	GCGC	2 cut(s)	598, 819
BstKTI	GATC	6 cut(s)	83, 178, 308, 322, 846, 1030
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 1232
BstNI	CCWGG	1 cut(s)	784
BstNSI	RCATGY	2 cut(s)	572, 854
BstSCI	CCNGG	1 cut(s)	782
BstSFI	CTRYAG	3 cut(s)	518, 966, 1224
BstV1I	GCAGC	4 cut(s)	121, 181, 355, 559
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	719, 792, 912
BtgI	CCRYGG	1 cut(s)	1158
BtsCI	GGATG	4 cut(s)	237, 286, 390, 496
BtsI	GCAGTG	2 cut(s)	672, 760
BtsIMutI	CAGTG	4 cut(s)	28, 315, 672, 760
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	157, 207, 243, 276, 354
CfoI	GCGC	2 cut(s)	598, 819
Cfr13I	GGNCC	3 cut(s)	446, 822, 1097
CviAII	CATG	3 cut(s)	569, 851, 1217
DpnI	GATC	6 cut(s)	82, 177, 307, 321, 845, 1029
DpnII	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
DriI	GACNNNNNGTC	1 cut(s)	1130
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	4 cut(s)	175, 429, 482, 834
Eam1105I	GACNNNNNGTC	1 cut(s)	1130
EarI	CTCTTC	4 cut(s)	175, 429, 482, 834
Ecl136II	GAGCTC	2 cut(s)	695, 758
Eco130I	CCWWGG	3 cut(s)	347, 599, 714
Eco24I	GRGCYC	2 cut(s)	697, 760
Eco47I	GGWCC	3 cut(s)	446, 822, 1097
Eco47III	AGCGCT	1 cut(s)	818
Eco53kI	GAGCTC	2 cut(s)	695, 758
Eco57I	CTGAAG	2 cut(s)	280, 495
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	2 cut(s)	695, 758
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	782
EcoT14I	CCWWGG	3 cut(s)	347, 599, 714
EcoT38I	GRGCYC	2 cut(s)	697, 760
ErhI	CCWWGG	3 cut(s)	347, 599, 714
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	3 cut(s)	572, 854, 1220
FaqI	GGGAC	2 cut(s)	404, 1156
FatI	CATG	3 cut(s)	568, 850, 1216
Fnu4HI	GCNGC	4 cut(s)	135, 195, 344, 573
FokI	GGATG	4 cut(s)	244, 273, 377, 483
FriOI	GRGCYC	2 cut(s)	697, 760
Fsp4HI	GCNGC	4 cut(s)	135, 195, 344, 573
FspBI	CTAG	2 cut(s)	1121, 1182
GlaI	GCGC	2 cut(s)	597, 818
GluI	GCNGC	4 cut(s)	135, 195, 344, 573
GsuI	CTGGAG	2 cut(s)	207, 957
HaeII	RGCGCY	2 cut(s)	599, 820
HaeIII	GGCC	3 cut(s)	719, 792, 912
HapII	CCGG	1 cut(s)	803
HhaI	GCGC	2 cut(s)	598, 819
Hin1II	CATG	3 cut(s)	572, 854, 1220
Hin6I	GCGC	2 cut(s)	596, 817
HinP1I	GCGC	2 cut(s)	596, 817
HinfI	GANTC	4 cut(s)	85, 533, 779, 799
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	265, 739
Hpy188I	TCNGA	9 cut(s)	69, 141, 175, 299, 310, 362, 388, 470, 1256
Hpy188III	TCNNGA	7 cut(s)	39, 54, 511, 541, 803, 872, 917
Hpy8I	GTNNAC	2 cut(s)	265, 739
HpyAV	CCTTC	5 cut(s)	243, 304, 620, 923, 978
HpyCH4III	ACNGT	6 cut(s)	128, 371, 522, 652, 967, 1130
HpyCH4V	TGCA	8 cut(s)	197, 343, 410, 611, 677, 765, 1015, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 1232
Hsp92II	CATG	3 cut(s)	572, 854, 1220
HspAI	GCGC	2 cut(s)	596, 817
Kpn2I	TCCGGA	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
LmnI	GCTCC	5 cut(s)	164, 593, 755, 814, 938
Lsp1109I	GCAGC	4 cut(s)	121, 181, 355, 559
MaeI	CTAG	2 cut(s)	1121, 1182
MaeIII	GTNAC	2 cut(s)	44, 110
MalI	GATC	6 cut(s)	82, 177, 307, 321, 845, 1029
MboI	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
MboII	GAAGA	7 cut(s)	162, 446, 488, 491, 499, 851, 1079
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	3 cut(s)	697, 753, 760
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	3 cut(s)	606, 1071, 1244
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	2 cut(s)	508, 571
Mox20I	TGGCCA	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	2 cut(s)	189, 710
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	792
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	784
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	356, 410
MvaI	CCWGG	1 cut(s)	784
MwoI	GCNNNNNNNGC	2 cut(s)	349, 1232
NdeII	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
NlaIII	CATG	3 cut(s)	572, 854, 1220
NspI	RCATGY	2 cut(s)	572, 854
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PctI	GAATGC	2 cut(s)	356, 410
PfeI	GAWTC	3 cut(s)	85, 533, 779
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	136, 196, 345, 574
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
PpuMI	RGGWCCY	1 cut(s)	446
Psp124BI	GAGCTC	2 cut(s)	697, 760
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	782
PspPI	GGNCC	3 cut(s)	446, 822, 1097
PspPPI	RGGWCCY	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	1228
PsyI	GACNNNGTC	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	2 cut(s)	697, 760
SaqAI	TTAA	2 cut(s)	189, 710
SatI	GCNGC	4 cut(s)	135, 195, 344, 573
Sau3AI	GATC	6 cut(s)	80, 175, 305, 319, 843, 1027
Sau96I	GGNCC	3 cut(s)	446, 822, 1097
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	3 cut(s)	697, 753, 760
SfcI	CTRYAG	3 cut(s)	518, 966, 1224
SinI	GGWCC	3 cut(s)	446, 822, 1097
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	539, 917
SmoI	CTYRAG	2 cut(s)	539, 917
Sse9I	AATT	3 cut(s)	606, 1071, 1244
SsiI	CCGC	3 cut(s)	575, 1049, 1179
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	2 cut(s)	1121, 1182
SstI	GAGCTC	2 cut(s)	697, 760
StyD4I	CCNGG	1 cut(s)	782
StyI	CCWWGG	3 cut(s)	347, 599, 714
TaaI	ACNGT	6 cut(s)	128, 371, 522, 652, 967, 1130
TaqI	TCGA	4 cut(s)	83, 510, 640, 777
TaqII	GACCGA	1 cut(s)	1079
TasI	AATT	3 cut(s)	606, 1071, 1244
TfiI	GAWTC	3 cut(s)	85, 533, 779
Tru1I	TTAA	2 cut(s)	189, 710
Tru9I	TTAA	2 cut(s)	189, 710
TscAI	CASTG	4 cut(s)	28, 322, 679, 767
TseI	GCWGC	4 cut(s)	134, 194, 343, 572
TspDTI	ATGAA	2 cut(s)	500, 941
TspGWI	ACGGA	2 cut(s)	279, 768
TspRI	CASTG	4 cut(s)	28, 322, 679, 767
Tth111I	GACNNNGTC	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	446, 822, 1097
XceI	RCATGY	2 cut(s)	572, 854
XspI	CTAG	2 cut(s)	1121, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.