Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

9588805 .. 9593000

Gene Structure 4196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGTCCCGCATTCCTCCCGCAAGTGGAAAATTTCTGCAAAATACAAATCCTCCAACTCTACATACAGTTGTCCGTCTCTCTCTCCCTCTCTATCCGAAATGGGTTTATCTGCTCCAGCCAGTGTGAACAGCTCTCTGGGATGGAAGTCTTCGAGCTTGTTCGTGCAGTCGGGGGCAAGTTCTACTTGTGCTACTCCCCGTGGTTCCATGGCTTCTTCTAAAAGAAAATGTGCCCAAAAGAAAGTTTCTGTAACCTGCTCTTCTTCTTCTTCATCTTCTGATCCACTCTTGGTTAAGGCTGCAAGAGGTGAGCCTGTAAGTCGGCCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCCGTTTACAGAAAGCTTGCAGAGAAATATCCATCATTCAGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCATCCTGACGGAGTGATTATTTTCTCAGACATACTTACCCCTCTACCTGCATTTGGTGTGCTGTTTGACATAGAAGACATTCGGGGTCCTGTTATCCAGTCACCAATTGTTTCTGAAGAGGGTTTGAAGACTTTACATCCAATTGACTTGGATAAACTTCAGTTTGTGGGGGAATCCTTAAAGATATTGCGGCAGGAGGTTGGCGGGCAAGCTGCTGTTTTGGGTTTTGTAGGGGCACCTTGGACGATTGCTACATACATAGTAGAAGGGGGTTCAACTTCCACGTATACAACAATAAAGAGCATGTGCCATACAGCACCACATGTATTGAGGGCTCTTCTTTCGCATTTGACACAGGCAATATCTGACTATATTGTTTTCCAAGTAGAAGCAGGGGCTCATTGTATACAAATATTTGATTCATGGGGTGGGCAACTACCACCAAGCATGTGGGATAGCTGGTCGAAGCCATATATTCAAGAGATCGTGAGTTCAGTTAGGAAAAGATGCCCTAAAACACCACTTGTTCTGTACATTAATGGGAATGGCGGCCTTCTTGAGCGTATGAAAGGAACTGGAGTAGATGTGATTGGGCTTGACTGGACGGTGGACATGGCAGATGGTAGAAAACGATTGGGTAGTGAGATCAGTGTACAGGGAAATGTGGACCCTGCTTACCTATTTTCTCCTCTTCCATCCCTGACTGAAGAAATTCTAAGGGTGGTGAGGTCTGCAGGGCCAAGGGGACACATTCTCAATCTAGGGCATGGTGTTCTTGTACGGACACCTGAAGAATCCGTTAGACATTTCTTTGAAGTTGCAAGAAGCTTGAATTATGATACATTTCTACAAACACAAACACCGACCGAAGGAATTGGTAGTTTAGTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

453

Amino Acids

49.27

Weight (kDa)

8.72

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	263, 520
AccB1I	GGYRCC	1 cut(s)	700
AccI	GTMKAC	2 cut(s)	752, 871
AciI	CCGC	5 cut(s)	8, 19, 655, 669, 1014
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	3 cut(s)	30, 438, 1176
AcuI	CTGAAG	4 cut(s)	600, 608, 1191, 1275
AfaI	GTAC	3 cut(s)	998, 1119, 1245
AfiI	CCNNNNNNNGG	3 cut(s)	24, 518, 1334
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	5 cut(s)	592, 741, 944, 1280, 1297
AluBI	AGCT	7 cut(s)	132, 156, 379, 461, 677, 924, 1293
AluI	AGCT	7 cut(s)	132, 156, 379, 461, 677, 924, 1293
Alw26I	GTCTC	2 cut(s)	81, 410
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	4 cut(s)	323, 363, 1015, 1202
ApeKI	GCWGC	3 cut(s)	299, 448, 677
ApoI	RAATTY	3 cut(s)	30, 438, 1176
AseI	ATTAAT	1 cut(s)	1002
Asp700I	GAANNNNTTC	2 cut(s)	543, 1176
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	4 cut(s)	4, 551, 1132, 1202
AsuHPI	GGTGA	3 cut(s)	320, 558, 1201
AvaII	GGWCC	3 cut(s)	4, 551, 1132
BaeGI	GKGCMC	2 cut(s)	235, 703
BanI	GGYRCC	1 cut(s)	700
BanII	GRGCYC	2 cut(s)	802, 865
BbsI	GAAGAC	3 cut(s)	141, 546, 599
BbvI	GCAGC	3 cut(s)	286, 460, 664
BccI	CCATC	5 cut(s)	135, 403, 474, 1079, 1168
BceAI	ACGGC	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	81, 410
BfaI	CTAG	1 cut(s)	1226
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	2 cut(s)	263, 520
BisI	GCNGC	5 cut(s)	300, 449, 656, 678, 1015
BlsI	GCNGC	5 cut(s)	301, 450, 657, 679, 1016
Bme18I	GGWCC	3 cut(s)	4, 551, 1132
BmgT120I	GGNCC	4 cut(s)	4, 551, 1132, 1202
BmiI	GGNNCC	5 cut(s)	6, 205, 552, 702, 1134
BmsI	GCATC	2 cut(s)	330, 962
BpiI	GAAGAC	3 cut(s)	141, 546, 599
BpmI	CTGGAG	3 cut(s)	99, 312, 1062
BpuEI	CTTGAG	1 cut(s)	1043
BsaAI	YACGTR	1 cut(s)	750
BsaJI	CCNNGG	5 cut(s)	199, 207, 452, 704, 1205
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 1035, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 518, 1334
Bse1I	ACTGG	4 cut(s)	120, 562, 1045, 1070
BseDI	CCNNGG	5 cut(s)	199, 207, 452, 704, 1205
BseGI	GGATG	5 cut(s)	146, 342, 466, 601, 1160
BseLI	CCNNNNNNNGG	3 cut(s)	24, 518, 1334
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	4 cut(s)	120, 562, 1045, 1070
BseRI	GAGGAG	1 cut(s)	1143
BseSI	GKGCMC	2 cut(s)	235, 703
BseXI	GCAGC	3 cut(s)	286, 460, 664
BsgI	GTGCAG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	1332
BshFI	GGCC	4 cut(s)	325, 365, 1017, 1204
BshNI	GGYRCC	1 cut(s)	700
BsiEI	CGRYCG	1 cut(s)	1332
BslFI	GGGAC	1 cut(s)	1224
BslI	CCNNNNNNNGG	3 cut(s)	24, 518, 1334
BsmAI	GTCTC	2 cut(s)	81, 410
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	1224
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	4 cut(s)	325, 365, 1017, 1204
Bsp1286I	GDGCHC	4 cut(s)	235, 703, 802, 865
Bsp1407I	TGTACA	2 cut(s)	996, 1117
Bsp143I	GATC	4 cut(s)	280, 424, 948, 1110
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	5 cut(s)	8, 19, 655, 669, 1014
BspANI	GGCC	4 cut(s)	325, 365, 1017, 1204
BspCNI	CTCAG	1 cut(s)	503
BspLI	GGNNCC	5 cut(s)	6, 205, 552, 702, 1134
BspMAI	CTGCAG	1 cut(s)	1201
BspMI	ACCTGC	2 cut(s)	263, 520
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	2 cut(s)	265, 807
BspT107I	GGYRCC	1 cut(s)	700
BsrGI	TGTACA	2 cut(s)	996, 1117
BsrI	ACTGG	4 cut(s)	120, 562, 1045, 1070
BssECI	CCNNGG	5 cut(s)	199, 207, 452, 704, 1205
BssMI	GATC	4 cut(s)	280, 424, 948, 1110
BssNAI	GTATAC	2 cut(s)	753, 872
BssT1I	CCWWGG	4 cut(s)	207, 452, 704, 1205
Bst1107I	GTATAC	2 cut(s)	753, 872
Bst4CI	ACNGT	2 cut(s)	68, 1072
Bst6I	CTCTTC	4 cut(s)	265, 576, 807, 1161
BstAUI	TGTACA	2 cut(s)	996, 1117
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	381, 671, 675
BstDEI	CTNAG	2 cut(s)	490, 1181
BstDSI	CCRYGG	2 cut(s)	199, 207
BstF5I	GGATG	5 cut(s)	146, 342, 466, 601, 1160
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	4 cut(s)	283, 427, 951, 1113
BstMAI	GTCTC	2 cut(s)	81, 410
BstMBI	GATC	4 cut(s)	280, 424, 948, 1110
BstMCI	CGRYCG	1 cut(s)	1332
BstNSI	RCATGY	3 cut(s)	772, 791, 916
BstSFI	CTRYAG	1 cut(s)	1197
BstSLI	GKGCMC	2 cut(s)	235, 703
BstV1I	GCAGC	3 cut(s)	286, 460, 664
BstV2I	GAAGAC	3 cut(s)	141, 546, 599
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstZ17I	GTATAC	2 cut(s)	753, 872
BsuRI	GGCC	4 cut(s)	325, 365, 1017, 1204
BtgI	CCRYGG	2 cut(s)	199, 207
BtsCI	GGATG	5 cut(s)	146, 342, 466, 601, 1160
BtsIMutI	CAGTG	2 cut(s)	127, 1120
BveI	ACCTGC	2 cut(s)	263, 520
Cac8I	GCNNGC	3 cut(s)	381, 671, 675
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	4 cut(s)	4, 551, 1132, 1202
Csp6I	GTAC	3 cut(s)	997, 1118, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	774, 809
CviAII	CATG	8 cut(s)	208, 333, 769, 788, 888, 913, 1078, 1232
CviQI	GTAC	3 cut(s)	997, 1118, 1244
DdeI	CTNAG	2 cut(s)	490, 1181
DpnI	GATC	4 cut(s)	282, 426, 950, 1112
DpnII	GATC	4 cut(s)	280, 424, 948, 1110
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	4 cut(s)	265, 576, 807, 1161
EarI	CTCTTC	4 cut(s)	265, 576, 807, 1161
Eco130I	CCWWGG	4 cut(s)	207, 452, 704, 1205
Eco24I	GRGCYC	2 cut(s)	802, 865
Eco47I	GGWCC	3 cut(s)	4, 551, 1132
Eco57I	CTGAAG	4 cut(s)	600, 608, 1191, 1275
EcoO109I	RGGNCCY	1 cut(s)	551
EcoT14I	CCWWGG	4 cut(s)	207, 452, 704, 1205
EcoT38I	GRGCYC	2 cut(s)	802, 865
ErhI	CCWWGG	4 cut(s)	207, 452, 704, 1205
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	8 cut(s)	211, 336, 772, 791, 891, 916, 1081, 1235
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	1224
FatI	CATG	8 cut(s)	207, 332, 768, 787, 887, 912, 1077, 1231
FauI	CCCGC	3 cut(s)	15, 26, 662
FblI	GTMKAC	2 cut(s)	752, 871
Fnu4HI	GCNGC	5 cut(s)	300, 449, 656, 678, 1015
FokI	GGATG	5 cut(s)	153, 349, 453, 588, 1147
FriOI	GRGCYC	2 cut(s)	802, 865
Fsp4HI	GCNGC	5 cut(s)	300, 449, 656, 678, 1015
FspBI	CTAG	1 cut(s)	1226
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	5 cut(s)	300, 449, 656, 678, 1015
GsuI	CTGGAG	3 cut(s)	99, 312, 1062
HaeIII	GGCC	4 cut(s)	325, 365, 1017, 1204
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	8 cut(s)	211, 336, 772, 791, 891, 916, 1081, 1235
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	3 cut(s)	377, 459, 1291
HinfI	GANTC	3 cut(s)	638, 884, 1259
HphI	GGTGA	3 cut(s)	320, 558, 1201
Hpy166II	GTNNAC	7 cut(s)	127, 370, 753, 872, 1075, 1118, 1132
Hpy188I	TCNGA	7 cut(s)	97, 280, 404, 415, 493, 580, 832
Hpy188III	TCNNGA	4 cut(s)	470, 944, 952, 1022
Hpy8I	GTNNAC	7 cut(s)	127, 370, 753, 872, 1075, 1118, 1132
HpyAV	CCTTC	4 cut(s)	348, 725, 1028, 1328
HpyCH4III	ACNGT	2 cut(s)	68, 1072
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	8 cut(s)	38, 166, 302, 383, 448, 515, 1199, 1286
HpyF3I	CTNAG	2 cut(s)	490, 1181
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	8 cut(s)	211, 336, 772, 791, 891, 916, 1081, 1235
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	280, 424, 948, 1110
LguI	GCTCTTC	2 cut(s)	265, 807
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	3 cut(s)	286, 460, 664
LweI	GCATC	2 cut(s)	330, 962
MaeI	CTAG	1 cut(s)	1226
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	250, 564
MalI	GATC	4 cut(s)	282, 426, 950, 1112
MboI	GATC	4 cut(s)	280, 424, 948, 1110
MfeI	CAATTG	2 cut(s)	570, 606
MhlI	GDGCHC	4 cut(s)	235, 703, 802, 865
MluCI	AATT	7 cut(s)	30, 438, 570, 606, 1176, 1297, 1338
MmeI	TCCRAC	1 cut(s)	78
MroXI	GAANNNNTTC	2 cut(s)	543, 1176
MseI	TTAA	3 cut(s)	294, 644, 1002
MunI	CAATTG	2 cut(s)	570, 606
Mva1269I	GAATGC	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	280, 424, 948, 1110
NlaIII	CATG	8 cut(s)	211, 336, 772, 791, 891, 916, 1081, 1235
NlaIV	GGNNCC	5 cut(s)	6, 205, 552, 702, 1134
NmuCI	GTSAC	1 cut(s)	564
NspI	RCATGY	3 cut(s)	772, 791, 916
PciI	ACATGT	1 cut(s)	787
PciSI	GCTCTTC	2 cut(s)	265, 807
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	543, 1176
PfeI	GAWTC	3 cut(s)	638, 884, 1259
PkrI	GCNGC	5 cut(s)	301, 450, 657, 679, 1016
Ppu21I	YACGTR	1 cut(s)	750
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	1 cut(s)	787
PshBI	ATTAAT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	551
PspN4I	GGNNCC	5 cut(s)	6, 205, 552, 702, 1134
PspPI	GGNCC	4 cut(s)	4, 551, 1132, 1202
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	1201
RsaI	GTAC	3 cut(s)	998, 1119, 1245
RsaNI	GTAC	3 cut(s)	997, 1118, 1244
SapI	GCTCTTC	2 cut(s)	265, 807
SaqAI	TTAA	3 cut(s)	294, 644, 1002
SatI	GCNGC	5 cut(s)	300, 449, 656, 678, 1015
Sau3AI	GATC	4 cut(s)	280, 424, 948, 1110
Sau96I	GGNCC	4 cut(s)	4, 551, 1132, 1202
SduI	GDGCHC	4 cut(s)	235, 703, 802, 865
SfaNI	GCATC	2 cut(s)	330, 962
SfcI	CTRYAG	1 cut(s)	1197
SinI	GGWCC	3 cut(s)	4, 551, 1132
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	30, 438, 570, 606, 1176, 1297, 1338
SsiI	CCGC	5 cut(s)	8, 19, 655, 669, 1014
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	1 cut(s)	1226
StyI	CCWWGG	4 cut(s)	207, 452, 704, 1205
TaaI	ACNGT	2 cut(s)	68, 1072
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	2 cut(s)	152, 929
TaqII	GACCGA	1 cut(s)	1346
TasI	AATT	7 cut(s)	30, 438, 570, 606, 1176, 1297, 1338
TatI	WGTACW	2 cut(s)	996, 1117
TauI	GCSGC	2 cut(s)	658, 1017
TfiI	GAWTC	3 cut(s)	638, 884, 1259
Tru1I	TTAA	3 cut(s)	294, 644, 1002
Tru9I	TTAA	3 cut(s)	294, 644, 1002
TscAI	CASTG	2 cut(s)	127, 1120
TseFI	GTSAC	1 cut(s)	564
TseI	GCWGC	3 cut(s)	299, 448, 677
Tsp45I	GTSAC	1 cut(s)	564
TspDTI	ATGAA	3 cut(s)	261, 876, 1046
TspGWI	ACGGA	4 cut(s)	63, 489, 1252, 1261
TspRI	CASTG	2 cut(s)	127, 1120
VpaK11BI	GGWCC	3 cut(s)	4, 551, 1132
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	3 cut(s)	30, 438, 1176
XceI	RCATGY	3 cut(s)	772, 791, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	912
XmiI	GTMKAC	2 cut(s)	752, 871
XmnI	GAANNNNTTC	2 cut(s)	543, 1176
XspI	CTAG	1 cut(s)	1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.