Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

24606993 .. 24610736

Gene Structure 3744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAAGTCTTCCAGCTTGTGCCTACAGCTAGGGGCCCCTACTCATCTCACTGCATTTTCGGTTTCTTCTACAACAAAATGTCCCCAAAAGAAAGCTTCTCTAACTTGCTCTTCTTCCTCTTCCTCGTCTGGCTCTTGTATCCACTCTTGGTTAAGGCTGCAAGAGGAGATCCTGTAAGTCGACCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCTGAGAAATACCCATCGTTCAGAGAGAGGTCAGAGACAACTGATCTCATCGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGCCCTGATGGAGTGATTATATTCTCAGACATACTTACACCTCTACCTGCATTTGGTGTCCCATTTGACATAGAAGATGTTAGAGGTCCCGTGATACAGTCACCAATTACTTCTGAAGAGGGCTTGAAGACTTTGCATCCAATTGACTTGGAGAAACTTCACTTTGTGGGAGAATCTTTAAAGATATTACGGCGGGAGGTTGGTGCAAATGCTGCTGTTTTGGGTTTTGTAGGGGCGCCTTGGACAATCGCTACGTATATAGTAGAAGGGGGTTCAACTTCCACATATACAACCATAAAGAGCATGTGCCATACAGCACCGCATGTATTGAGGGCTCTGCTTTCTCATTTAACACAGGCAATAGCAGACTATATTGTTTTCCAAGTAGACGCAGGGGCTCATTGCATACAAATATTTGATTCATGGGGTGGGCAATTACCACCAGCCATGTGGGAAAGCTGGTCAAAGCCTTATATTGAAGAGATTGTGAGTTCTGTGCGAAAAAGATGCCCAGAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCCTCCTTGAGCGGATGAAAGGAACTGGTGTCGATGTGATTGGGCTTGACTGGACGGTGGACATGGCAGATGGTAGAAAACGATTGGGTAGTGGAATCAGTGTACAGGGAAATGTGGACCCTGCTTACTTATTTTCTCCTCTTCCGACATTGACTGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGAGGACACATCCTCAATCTAGGGCATGGTGTTCTTCAACGGACGCCCGAAGAAGCTGTTAAACATTTCTTTGAAGTGGCAAGAAGCTTGAACTATGATACGTTTCTTCAAAAACAACCGCAAAAGGAATTGGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

401

Amino Acids

44.82

Weight (kDa)

6.57

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	49 - 384	2.7e-116	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	886
AccI	GTMKAC	2 cut(s)	181, 711
AciI	CCGC	5 cut(s)	325, 517, 644, 886, 1184
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	297, 1035
AcuI	CTGAAG	2 cut(s)	459, 1050
AcyI	GRCGYC	2 cut(s)	560, 1109
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	978
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	8 cut(s)	451, 600, 803, 1040, 1103, 1139, 1156, 1175
AluBI	AGCT	9 cut(s)	16, 29, 96, 238, 320, 783, 1121, 1152, 1202
AluI	AGCT	9 cut(s)	16, 29, 96, 238, 320, 783, 1121, 1152, 1202
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	3 cut(s)	34, 874, 1061
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	158, 307, 536
ApoI	RAATTY	2 cut(s)	297, 1035
AseI	ATTAAT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspLEI	GCGC	2 cut(s)	204, 562
AspS9I	GGNCC	5 cut(s)	34, 35, 410, 991, 1061
AsuHPI	GGTGA	2 cut(s)	417, 1060
AvaII	GGWCC	2 cut(s)	410, 991
BaeGI	GKGCMC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	3 cut(s)	38, 661, 724
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	145, 319, 523
BccI	CCATC	3 cut(s)	262, 326, 938
BceAI	ACGGC	1 cut(s)	530
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciVI	GTATCC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	30, 1085
BfmI	CTRYAG	2 cut(s)	24, 1056
BfoI	RGCGCY	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	3 cut(s)	159, 308, 537
BlsI	GCNGC	3 cut(s)	160, 309, 538
Bme18I	GGWCC	2 cut(s)	410, 991
BmgT120I	GGNCC	5 cut(s)	34, 35, 410, 991, 1061
BmiI	GGNNCC	6 cut(s)	35, 36, 37, 412, 561, 993
BmsI	GCATC	3 cut(s)	189, 469, 821
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	902
BsaAI	YACGTR	1 cut(s)	579
BsaHI	GRCGYC	2 cut(s)	560, 1109
BsaJI	CCNNGG	2 cut(s)	311, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	904, 929
Bse3DI	GCAATG	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	311, 563
BseGI	GGATG	4 cut(s)	201, 460, 894, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	2 cut(s)	234, 363
BseNI	ACTGG	2 cut(s)	904, 929
BseRI	GAGGAG	2 cut(s)	180, 1002
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	145, 319, 523
BshFI	GGCC	3 cut(s)	36, 876, 1063
BshNI	GGYRCC	1 cut(s)	559
BslFI	GGGAC	3 cut(s)	67, 368, 396
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	3 cut(s)	67, 368, 396
BsnI	GGCC	3 cut(s)	36, 876, 1063
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	38, 661, 724
Bsp1407I	TGTACA	1 cut(s)	976
Bsp143I	GATC	2 cut(s)	169, 283
BspACI	CCGC	5 cut(s)	325, 517, 644, 886, 1184
BspANI	GGCC	3 cut(s)	36, 876, 1063
BspCNI	CTCAG	2 cut(s)	235, 362
BspLI	GGNNCC	6 cut(s)	35, 36, 37, 412, 561, 993
BspMAI	CTGCAG	1 cut(s)	1060
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	559
BsrBI	CCGCTC	1 cut(s)	886
BsrDI	GCAATG	1 cut(s)	724
BsrGI	TGTACA	1 cut(s)	976
BsrI	ACTGG	2 cut(s)	904, 929
BssECI	CCNNGG	2 cut(s)	311, 563
BssMI	GATC	2 cut(s)	169, 283
BssNI	GRCGYC	2 cut(s)	560, 1109
BssT1I	CCWWGG	2 cut(s)	311, 563
Bst4CI	ACNGT	2 cut(s)	423, 931
Bst6I	CTCTTC	5 cut(s)	116, 125, 435, 798, 1020
BstACI	GRCGYC	2 cut(s)	560, 1109
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	976
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	243, 349, 1203
BstF5I	GGATG	4 cut(s)	201, 460, 894, 1074
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	204, 562
BstKTI	GATC	2 cut(s)	172, 286
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	169, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	631, 650
BstSFI	CTRYAG	2 cut(s)	24, 1056
BstSLI	GKGCMC	1 cut(s)	38
BstSNI	TACGTA	1 cut(s)	579
BstV1I	GCAGC	3 cut(s)	145, 319, 523
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	774
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	36, 876, 1063
BtsCI	GGATG	4 cut(s)	201, 460, 894, 1074
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 979
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	2 cut(s)	204, 562
Cfr13I	GGNCC	5 cut(s)	34, 35, 410, 991, 1061
CseI	GACGC	2 cut(s)	722, 1117
Csp6I	GTAC	1 cut(s)	977
CviAII	CATG	7 cut(s)	192, 628, 647, 747, 772, 937, 1091
CviQI	GTAC	1 cut(s)	977
DdeI	CTNAG	3 cut(s)	243, 349, 1203
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	2 cut(s)	171, 285
DpnII	GATC	2 cut(s)	169, 283
DraI	TTTAAA	1 cut(s)	504
DraIII	CACNNNGTG	1 cut(s)	490
Eam1104I	CTCTTC	5 cut(s)	116, 125, 435, 798, 1020
EarI	CTCTTC	5 cut(s)	116, 125, 435, 798, 1020
EciI	GGCGGA	1 cut(s)	314
Eco105I	TACGTA	1 cut(s)	579
Eco130I	CCWWGG	2 cut(s)	311, 563
Eco24I	GRGCYC	3 cut(s)	38, 661, 724
Eco47I	GGWCC	2 cut(s)	410, 991
Eco57I	CTGAAG	2 cut(s)	459, 1050
EcoO109I	RGGNCCY	3 cut(s)	34, 35, 410
EcoT14I	CCWWGG	2 cut(s)	311, 563
EcoT38I	GRGCYC	3 cut(s)	38, 661, 724
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
ErhI	CCWWGG	2 cut(s)	311, 563
FaeI	CATG	7 cut(s)	195, 631, 650, 750, 775, 940, 1094
FaqI	GGGAC	3 cut(s)	67, 368, 396
FatI	CATG	7 cut(s)	191, 627, 646, 746, 771, 936, 1090
FauI	CCCGC	1 cut(s)	510
FblI	GTMKAC	2 cut(s)	181, 711
Fnu4HI	GCNGC	3 cut(s)	159, 308, 537
FokI	GGATG	4 cut(s)	208, 447, 901, 1061
FriOI	GRGCYC	3 cut(s)	38, 661, 724
Fsp4HI	GCNGC	3 cut(s)	159, 308, 537
FspBI	CTAG	2 cut(s)	30, 1085
GlaI	GCGC	2 cut(s)	203, 561
GluI	GCNGC	3 cut(s)	159, 308, 537
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	36, 876, 1063
HgaI	GACGC	2 cut(s)	722, 1117
HhaI	GCGC	2 cut(s)	204, 562
Hin1I	GRCGYC	2 cut(s)	560, 1109
Hin1II	CATG	7 cut(s)	195, 631, 650, 750, 775, 940, 1094
Hin6I	GCGC	2 cut(s)	202, 560
HinP1I	GCGC	2 cut(s)	202, 560
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HindIII	AAGCTT	4 cut(s)	94, 236, 318, 1150
HinfI	GANTC	3 cut(s)	497, 743, 969
HphI	GGTGA	2 cut(s)	417, 1060
Hpy166II	GTNNAC	6 cut(s)	182, 229, 712, 934, 977, 991
Hpy188I	TCNGA	5 cut(s)	263, 274, 352, 439, 1020
Hpy8I	GTNNAC	6 cut(s)	182, 229, 712, 934, 977, 991
HpyAV	CCTTC	2 cut(s)	207, 584
HpyCH4III	ACNGT	2 cut(s)	423, 931
HpyCH4IV	ACGT	2 cut(s)	578, 1166
HpyCH4V	TGCA	8 cut(s)	54, 161, 307, 374, 460, 530, 729, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	3 cut(s)	243, 349, 1203
HpySE526I	ACGT	2 cut(s)	578, 1166
Hsp92I	GRCGYC	2 cut(s)	560, 1109
Hsp92II	CATG	7 cut(s)	195, 631, 650, 750, 775, 940, 1094
HspAI	GCGC	2 cut(s)	202, 560
KasI	GGCGCC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	169, 283
LguI	GCTCTTC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	145, 319, 523
LweI	GCATC	3 cut(s)	189, 469, 821
MaeI	CTAG	2 cut(s)	30, 1085
MaeII	ACGT	2 cut(s)	578, 1166
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	2 cut(s)	171, 285
MbiI	CCGCTC	1 cut(s)	886
MboI	GATC	2 cut(s)	169, 283
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	38, 661, 724
MluCI	AATT	6 cut(s)	297, 429, 465, 758, 1035, 1193
Mly113I	GGCGCC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	1043
MroXI	GAANNNNTTC	1 cut(s)	1035
MseI	TTAA	5 cut(s)	153, 503, 674, 861, 1125
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	536
NarI	GGCGCC	1 cut(s)	560
NdeII	GATC	2 cut(s)	169, 283
NlaIII	CATG	7 cut(s)	195, 631, 650, 750, 775, 940, 1094
NlaIV	GGNNCC	6 cut(s)	35, 36, 37, 412, 561, 993
NmuCI	GTSAC	1 cut(s)	423
NspI	RCATGY	2 cut(s)	631, 650
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	1035
PfeI	GAWTC	3 cut(s)	497, 743, 969
PkrI	GCNGC	3 cut(s)	160, 309, 538
PluTI	GGCGCC	1 cut(s)	563
Ppu21I	YACGTR	1 cut(s)	579
PpuMI	RGGWCCY	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	410
PspN4I	GGNNCC	6 cut(s)	35, 36, 37, 412, 561, 993
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	5 cut(s)	34, 35, 410, 991, 1061
PspPPI	RGGWCCY	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	978
RsaNI	GTAC	1 cut(s)	977
SalI	GTCGAC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	153, 503, 674, 861, 1125
SatI	GCNGC	3 cut(s)	159, 308, 537
Sau3AI	GATC	2 cut(s)	169, 283
Sau96I	GGNCC	5 cut(s)	34, 35, 410, 991, 1061
SduI	GDGCHC	3 cut(s)	38, 661, 724
SfaNI	GCATC	3 cut(s)	189, 469, 821
SfcI	CTRYAG	2 cut(s)	24, 1056
SfoI	GGCGCC	1 cut(s)	561
SinI	GGWCC	2 cut(s)	410, 991
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SnaBI	TACGTA	1 cut(s)	579
Sse9I	AATT	6 cut(s)	297, 429, 465, 758, 1035, 1193
SsiI	CCGC	5 cut(s)	325, 517, 644, 886, 1184
SspDI	GGCGCC	1 cut(s)	559
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	2 cut(s)	30, 1085
StyI	CCWWGG	2 cut(s)	311, 563
TaaI	ACNGT	2 cut(s)	423, 931
TaiI	ACGT	2 cut(s)	581, 1169
TaqI	TCGA	2 cut(s)	181, 906
TasI	AATT	6 cut(s)	297, 429, 465, 758, 1035, 1193
TatI	WGTACW	1 cut(s)	976
TfiI	GAWTC	3 cut(s)	497, 743, 969
Tru1I	TTAA	5 cut(s)	153, 503, 674, 861, 1125
Tru9I	TTAA	5 cut(s)	153, 503, 674, 861, 1125
TscAI	CASTG	2 cut(s)	56, 979
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	3 cut(s)	158, 307, 536
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	735, 905
TspGWI	ACGGA	1 cut(s)	1120
TspRI	CASTG	2 cut(s)	56, 979
VpaK11BI	GGWCC	2 cut(s)	410, 991
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	2 cut(s)	297, 1035
XceI	RCATGY	2 cut(s)	631, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XmiI	GTMKAC	2 cut(s)	181, 711
XmnI	GAANNNNTTC	1 cut(s)	1035
XspI	CTAG	2 cut(s)	30, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.