Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

10798730 .. 10800323

Gene Structure 1594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTAGAAGTCTTGTACAACTCACAGATCTAAAGATATCCAATTGTGAACTCATGCAAGAGATCATATCGTCAAAAAGAGAATGTGGTGAAGAAAATATGGATATCATTCTTTCCGAACTTAAGGTTTTGAAGCTTGATAAACTTCCAAACCTTGTTAGATTTAGCACAGGAAATCATATGGAATTTCCAGCCTTGGAAGAACTGAAGATAAAGGATTGCGATCAACTGTTGGAATTCATTAGTGATAAAGTTACTATGAGTAGTGAAGATAGCAGAGTATGCAAAGAAATTGGACAGTGGGTCTTGGAAGAGGATGAGAACCTTGATGTTAAGAGCGAGACTATTGTACAATATTTCCTCTTTGACAGAAAGGTAGGATTTCCTAGCTTGGAGAGATTGAGCATCAAAGGGGTAAGGGGCTTGAAGGCAATTTGGCACGTCCAACTATCTCAAAACTCTTTTTGGAGACTCAAGCAAGTTGAGGTTCGGGATTGTGACAATCTAATAAGTTTGTTTCCGCCTAGTGTCATGAGAAGATTGGATACACTGGAAACCTTGGAGATACGGAACTGCAAATCACTAGAAGTGGTATGTGAGGAAATTGTTGTTGCTGAAGAGGAACAAGAAATTGTAGAGGCAATTTGGCACGTCCAACTATCTCAAAACTCTTTTTGGAGACTCAAGCAAGTTGAGGTTCGGGAATGTGACAATCTAATAAGTTTGTTTCCGCCTAGTGTCATGAGAAGATTGAATGCGCTGGAAACCTTGAAGATATGGAGGTGCAAATCACTAGAAGTGGTATGTGAGGAAATTGTTGTTGCAGAAGAGGAACAAGAAGTCGTAGAAACAACACCTTCTCCATTTGTATTTCCAAAAGTAACATCCGTGGAGTTGGGGAACCTACCTCAACTTACGGGTTGCATAAAAGCTTCACAGTGGCCATCACTCAAACAATTGGAGGTGACGGGATGTGATAAAGTGGGAATTTTTGCCACAGAATTTTCTCACTTTGGAAAGAAATATGAGATGGAACCTCTAACGACGTCTCAAAAGCCTTTATTTCTAACCGACAAGGCTGGGAGAACTCCTAAAATATCATCAGAAGAGCCTGCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

373

Amino Acids

42.83

Weight (kDa)

4.93

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	1 - 82	7.1e-09	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	128 - 193	6.2e-15	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2	PF23247	211 - 327	6.4e-16	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1049
AciI	CCGC	2 cut(s)	521, 731
AcoI	YGGCCR	1 cut(s)	941
AcsI	RAATTY	4 cut(s)	185, 236, 987, 1001
AcuI	CTGAAG	2 cut(s)	227, 636
AcyI	GRCGYC	1 cut(s)	1046
AfaI	GTAC	2 cut(s)	18, 351
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	133, 427, 754, 772
AhdI	GACNNNNNGTC	1 cut(s)	302
AjiI	CACGTC	2 cut(s)	442, 652
AluBI	AGCT	3 cut(s)	136, 390, 932
AluI	AGCT	3 cut(s)	136, 390, 932
Alw26I	GTCTC	4 cut(s)	335, 463, 673, 1053
AoxI	GGCC	1 cut(s)	941
ApoI	RAATTY	4 cut(s)	185, 236, 987, 1001
AspLEI	GCGC	1 cut(s)	760
AsuHPI	GGTGA	2 cut(s)	101, 976
BalI	TGGCCA	1 cut(s)	943
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BccI	CCATC	2 cut(s)	952, 1024
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	4 cut(s)	335, 463, 673, 1053
BfaI	CTAG	7 cut(s)	6, 387, 525, 584, 735, 794, 1120
BfrI	CTTAAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	302
BmgBI	CACGTC	2 cut(s)	442, 652
BmiI	GGNNCC	2 cut(s)	902, 1035
BmsI	GCATC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	458, 668
BsaBI	GATNNNNATC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	1046
BsaJI	CCNNGG	3 cut(s)	195, 558, 888
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bse1I	ACTGG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	195, 558, 888
BseGI	GGATG	3 cut(s)	322, 884, 977
BseJI	GATNNNNATC	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	1079
BshFI	GGCC	1 cut(s)	943
BsmAI	GTCTC	4 cut(s)	335, 463, 673, 1053
BsmBI	CGTCTC	1 cut(s)	1053
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	943
Bsp1407I	TGTACA	2 cut(s)	16, 349
Bsp143I	GATC	3 cut(s)	28, 63, 223
BspACI	CCGC	2 cut(s)	521, 731
BspANI	GGCC	1 cut(s)	943
BspHI	TCATGA	2 cut(s)	531, 741
BspLI	GGNNCC	2 cut(s)	902, 1035
BspQI	GCTCTTC	1 cut(s)	1101
BspTI	CTTAAG	1 cut(s)	122
BsrGI	TGTACA	2 cut(s)	16, 349
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	3 cut(s)	195, 558, 888
BssMI	GATC	3 cut(s)	28, 63, 223
BssNI	GRCGYC	1 cut(s)	1046
BssT1I	CCWWGG	2 cut(s)	195, 558
Bst4CI	ACNGT	3 cut(s)	231, 300, 939
Bst6I	CTCTTC	4 cut(s)	306, 612, 822, 1101
BstACI	GRCGYC	1 cut(s)	1046
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstAUI	TGTACA	2 cut(s)	16, 349
BstC8I	GCNNGC	1 cut(s)	1113
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	3 cut(s)	322, 884, 977
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	3 cut(s)	31, 66, 226
BstMAI	GTCTC	4 cut(s)	335, 463, 673, 1053
BstMBI	GATC	3 cut(s)	28, 63, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	943
BtgI	CCRYGG	1 cut(s)	888
BtrI	CACGTC	2 cut(s)	442, 652
BtsCI	GGATG	3 cut(s)	322, 884, 977
BtsIMutI	CAGTG	3 cut(s)	305, 548, 944
Cac8I	GCNNGC	1 cut(s)	1113
CciI	TCATGA	2 cut(s)	531, 741
CfoI	GCGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	17, 350
CviAII	CATG	3 cut(s)	55, 532, 742
CviQI	GTAC	2 cut(s)	17, 350
DpnI	GATC	3 cut(s)	30, 65, 225
DpnII	GATC	3 cut(s)	28, 63, 223
DriI	GACNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	941
Eam1104I	CTCTTC	4 cut(s)	306, 612, 822, 1101
Eam1105I	GACNNNNNGTC	1 cut(s)	302
EarI	CTCTTC	4 cut(s)	306, 612, 822, 1101
EciI	GGCGGA	2 cut(s)	510, 720
Eco130I	CCWWGG	2 cut(s)	195, 558
Eco32I	GATATC	2 cut(s)	39, 106
Eco57I	CTGAAG	2 cut(s)	227, 636
EcoRI	GAATTC	1 cut(s)	236
EcoRV	GATATC	2 cut(s)	39, 106
EcoT14I	CCWWGG	2 cut(s)	195, 558
ErhI	CCWWGG	2 cut(s)	195, 558
Esp3I	CGTCTC	1 cut(s)	1053
FaeI	CATG	3 cut(s)	58, 535, 745
FatI	CATG	3 cut(s)	54, 531, 741
FauNDI	CATATG	1 cut(s)	180
FokI	GGATG	3 cut(s)	329, 871, 984
FspBI	CTAG	7 cut(s)	6, 387, 525, 584, 735, 794, 1120
GlaI	GCGC	1 cut(s)	759
GsaI	CCCAGC	1 cut(s)	1083
HaeIII	GGCC	1 cut(s)	943
HhaI	GCGC	1 cut(s)	760
Hin1I	GRCGYC	1 cut(s)	1046
Hin1II	CATG	3 cut(s)	58, 535, 745
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HindIII	AAGCTT	2 cut(s)	134, 930
HinfI	GANTC	2 cut(s)	471, 681
HphI	GGTGA	2 cut(s)	101, 976
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	118, 1105
Hpy188III	TCNNGA	4 cut(s)	491, 532, 701, 742
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	1048
HpyAV	CCTTC	2 cut(s)	421, 867
HpyCH4III	ACNGT	3 cut(s)	231, 300, 939
HpyCH4IV	ACGT	3 cut(s)	441, 651, 1046
HpyCH4V	TGCA	6 cut(s)	58, 285, 576, 786, 824, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	441, 651, 1046
Hsp92I	GRCGYC	1 cut(s)	1046
Hsp92II	CATG	3 cut(s)	58, 535, 745
HspAI	GCGC	1 cut(s)	758
Kzo9I	GATC	3 cut(s)	28, 63, 223
LguI	GCTCTTC	1 cut(s)	1101
LpnPI	CCDG	5 cut(s)	156, 204, 536, 746, 1065
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	7 cut(s)	6, 387, 525, 584, 735, 794, 1120
MaeII	ACGT	3 cut(s)	441, 651, 1046
MaeIII	GTNAC	5 cut(s)	253, 497, 707, 880, 964
MalI	GATC	3 cut(s)	30, 65, 225
MboI	GATC	3 cut(s)	28, 63, 223
MfeI	CAATTG	2 cut(s)	43, 956
MflI	RGATCY	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	943
MluNI	TGGCCA	1 cut(s)	943
MlyI	GAGTC	2 cut(s)	465, 675
MmeI	TCCRAC	3 cut(s)	213, 469, 679
Mox20I	TGGCCA	1 cut(s)	943
MscI	TGGCCA	1 cut(s)	943
MseI	TTAA	2 cut(s)	123, 333
Msp20I	TGGCCA	1 cut(s)	943
MspCI	CTTAAG	1 cut(s)	122
MunI	CAATTG	2 cut(s)	43, 956
Mva1269I	GAATGC	1 cut(s)	760
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	28, 63, 223
NlaIII	CATG	3 cut(s)	58, 535, 745
NlaIV	GGNNCC	2 cut(s)	902, 1035
NmuCI	GTSAC	3 cut(s)	497, 707, 964
PagI	TCATGA	2 cut(s)	531, 741
PciSI	GCTCTTC	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	760
PleI	GAGTC	2 cut(s)	465, 675
PpsI	GAGTC	2 cut(s)	465, 675
PspFI	CCCAGC	1 cut(s)	1079
PspN4I	GGNNCC	2 cut(s)	902, 1035
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	2 cut(s)	18, 351
RsaNI	GTAC	2 cut(s)	17, 350
SapI	GCTCTTC	1 cut(s)	1101
SaqAI	TTAA	2 cut(s)	123, 333
Sau3AI	GATC	3 cut(s)	28, 63, 223
SchI	GAGTC	2 cut(s)	465, 675
SfaNI	GCATC	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	122, 473, 683
SmoI	CTYRAG	3 cut(s)	122, 473, 683
SsiI	CCGC	2 cut(s)	521, 731
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	7 cut(s)	6, 387, 525, 584, 735, 794, 1120
StyI	CCWWGG	2 cut(s)	195, 558
TaaI	ACNGT	3 cut(s)	231, 300, 939
TaiI	ACGT	3 cut(s)	444, 654, 1049
TatI	WGTACW	2 cut(s)	16, 349
Tru1I	TTAA	2 cut(s)	123, 333
Tru9I	TTAA	2 cut(s)	123, 333
TscAI	CASTG	3 cut(s)	305, 555, 944
TseFI	GTSAC	3 cut(s)	497, 707, 964
Tsp45I	GTSAC	3 cut(s)	497, 707, 964
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	2 cut(s)	583, 877
TspRI	CASTG	3 cut(s)	305, 555, 944
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	4 cut(s)	185, 236, 987, 1001
XspI	CTAG	7 cut(s)	6, 387, 525, 584, 735, 794, 1120
ZraI	GACGTC	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.