Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

11708051 .. 11712004

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18330.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATGATGCGCCAAGCAGGAAGCCTTGGGAAGCTTTCCGCCCTGATGGAGTAATTATATTCTCTGACATACTTACACCTCTACCGGCATTTGGTGTCCCATTTGACATAGAAGATGTTAGAGGTCCCGTGATACAGTCACCAATTACTTGTGAAGAGGGCTTAAAGACTTTGCATCCAATTGACTTCGAGAAACTTCAGTTTGTGGGAGAATCTTTAAAGATCTTACGGCGGGAGGTTGGTGGGAATGCTGCTGTTTTGGGTTTTGTAGGGGCGCCTTGGACAATTGCTACGTATATAGTAGAAGGGGGTTCAACTTCCACTTATACAACCATAAAGAGCATGTGCCATACGGCACCGCATGTATTGAGGGCTCTGCTTTCTCATTTAACACAGGCAATAGCAGATTATATTGTTTTCCAAGTAGACGCAGGGGCTCATTGCATACAAATATTTGATTCATGGGGTGGGCAATTACCACCAGCCATGTGGGAAAGCTGGTCAAAACCTTATATTGAAGAGATTGTGAGTTCTGTGAGAAAAAGATGCCCAGAAACACCACTTGTTCTTTACATTAATGGGAATGGTGGCATCCTTGAGCGTATGAAAGGAACTGGAGTCGATGTGATTGGGCTTGACTGGACGGTGGACATGGCAGATGGTAGAAGACGATTGGGTAGTGGAATCAGTGTACAGGGAAATGTGGACCCTGCTTACTTATTTTCTCCTCTTCCGACATTGACTGAAGAAATTCAAAGGGTGGTGAGGGCTGCAGGGCCAAGAGGACACATCCTCAATCTAGGGCATGGTGTTCTTCAACGGACACCGGAAGAAGCTGTTAAACATTTCTTTGAAGTTGCAAGAAGCTTGAACTATAATACGTTTCTTCAAACACAACCACAAAAGGAATTGGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

307

Amino Acids

33.67

Weight (kDa)

5.64

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	56 - 392	4.5e-117	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	274, 355
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	3 cut(s)	40, 232, 359
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	2 cut(s)	182, 765
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	7 cut(s)	315, 518, 755, 818, 854, 871, 890
AluBI	AGCT	5 cut(s)	35, 498, 836, 867, 917
AluI	AGCT	5 cut(s)	35, 498, 836, 867, 917
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	2 cut(s)	251, 770
ApoI	RAATTY	1 cut(s)	750
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	13, 277
AspS9I	GGNCC	3 cut(s)	125, 706, 776
AsuHPI	GGTGA	2 cut(s)	132, 775
AvaII	GGWCC	2 cut(s)	125, 706
BanI	GGYRCC	2 cut(s)	274, 355
BanII	GRGCYC	2 cut(s)	376, 439
BbsI	GAAGAC	1 cut(s)	673
BbvI	GCAGC	2 cut(s)	238, 757
BccI	CCATC	2 cut(s)	41, 653
BceAI	ACGGC	2 cut(s)	245, 369
BfaI	CTAG	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	771
BfoI	RGCGCY	1 cut(s)	278
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	2 cut(s)	252, 771
BlsI	GCNGC	2 cut(s)	253, 772
Bme18I	GGWCC	2 cut(s)	125, 706
BmgT120I	GGNCC	3 cut(s)	125, 706, 776
BmiI	GGNNCC	4 cut(s)	127, 276, 357, 708
BmsI	GCATC	3 cut(s)	184, 536, 600
BpiI	GAAGAC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	617
BsaAI	YACGTR	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	26, 278
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	619, 644
Bse3DI	GCAATG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	26, 278
BseGI	GGATG	4 cut(s)	10, 175, 591, 789
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	439
BseNI	ACTGG	2 cut(s)	619, 644
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	238, 757
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	2 cut(s)	274, 355
BsiSI	CCGG	2 cut(s)	86, 827
BslFI	GGGAC	2 cut(s)	83, 111
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	83, 111
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	376, 439
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	3 cut(s)	40, 232, 359
BspANI	GGCC	1 cut(s)	778
BspLI	GGNNCC	4 cut(s)	127, 276, 357, 708
BspMAI	CTGCAG	1 cut(s)	775
BspT107I	GGYRCC	2 cut(s)	274, 355
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	619, 644
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	26, 278
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	2 cut(s)	26, 278
Bst4CI	ACNGT	2 cut(s)	138, 646
Bst6I	CTCTTC	3 cut(s)	150, 513, 735
BstACI	GRCGYC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	691
BstBAI	YACGTR	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	918
BstF5I	GGATG	4 cut(s)	10, 175, 591, 789
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	13, 277
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstNSI	RCATGY	2 cut(s)	346, 365
BstSFI	CTRYAG	1 cut(s)	771
BstSNI	TACGTA	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	238, 757
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	778
BtsCI	GGATG	4 cut(s)	10, 175, 591, 789
BtsIMutI	CAGTG	1 cut(s)	694
CfoI	GCGC	2 cut(s)	13, 277
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	125, 706, 776
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	6 cut(s)	343, 362, 462, 487, 652, 806
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	1 cut(s)	918
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
DraI	TTTAAA	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	150, 513, 735
EarI	CTCTTC	3 cut(s)	150, 513, 735
EciI	GGCGGA	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	26, 278
Eco24I	GRGCYC	2 cut(s)	376, 439
Eco47I	GGWCC	2 cut(s)	125, 706
Eco57I	CTGAAG	2 cut(s)	182, 765
EcoO109I	RGGNCCY	1 cut(s)	125
EcoT14I	CCWWGG	2 cut(s)	26, 278
EcoT38I	GRGCYC	2 cut(s)	376, 439
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	26, 278
FaeI	CATG	6 cut(s)	346, 365, 465, 490, 655, 809
FaqI	GGGAC	2 cut(s)	83, 111
FatI	CATG	6 cut(s)	342, 361, 461, 486, 651, 805
FauI	CCCGC	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	252, 771
FokI	GGATG	4 cut(s)	17, 162, 578, 776
FriOI	GRGCYC	2 cut(s)	376, 439
Fsp4HI	GCNGC	2 cut(s)	252, 771
FspBI	CTAG	1 cut(s)	800
GlaI	GCGC	2 cut(s)	12, 276
GluI	GCNGC	2 cut(s)	252, 771
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	2 cut(s)	86, 827
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	13, 277
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	346, 365, 465, 490, 655, 809
Hin6I	GCGC	2 cut(s)	11, 275
HinP1I	GCGC	2 cut(s)	11, 275
HindIII	AAGCTT	2 cut(s)	33, 865
HinfI	GANTC	4 cut(s)	212, 458, 618, 684
HpaII	CCGG	2 cut(s)	86, 827
HphI	GGTGA	2 cut(s)	132, 775
Hpy166II	GTNNAC	4 cut(s)	427, 649, 692, 706
Hpy188I	TCNGA	2 cut(s)	67, 735
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	4 cut(s)	427, 649, 692, 706
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	138, 646
HpyCH4IV	ACGT	2 cut(s)	293, 881
HpyCH4V	TGCA	4 cut(s)	175, 444, 773, 860
HpyF3I	CTNAG	1 cut(s)	918
HpySE526I	ACGT	2 cut(s)	293, 881
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	6 cut(s)	346, 365, 465, 490, 655, 809
HspAI	GCGC	2 cut(s)	11, 275
KasI	GGCGCC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	238, 757
LweI	GCATC	3 cut(s)	184, 536, 600
MaeI	CTAG	1 cut(s)	800
MaeII	ACGT	2 cut(s)	293, 881
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	9 cut(s)	125, 167, 530, 678, 722, 758, 806, 842, 878
MfeI	CAATTG	2 cut(s)	180, 285
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	376, 439
MluCI	AATT	7 cut(s)	54, 144, 180, 285, 473, 750, 908
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	9 cut(s)	90, 116, 151, 229, 363, 738, 759, 776, 803
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	5 cut(s)	164, 218, 389, 576, 840
MspI	CCGG	2 cut(s)	86, 827
MunI	CAATTG	2 cut(s)	180, 285
Mva1269I	GAATGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	275
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	6 cut(s)	346, 365, 465, 490, 655, 809
NlaIV	GGNNCC	4 cut(s)	127, 276, 357, 708
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	2 cut(s)	346, 365
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	212, 458, 684
PkrI	GCNGC	2 cut(s)	253, 772
PleI	GAGTC	1 cut(s)	626
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	626
Ppu21I	YACGTR	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	125
PshBI	ATTAAT	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	125
PspN4I	GGNNCC	4 cut(s)	127, 276, 357, 708
PspPI	GGNCC	3 cut(s)	125, 706, 776
PspPPI	RGGWCCY	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
SaqAI	TTAA	5 cut(s)	164, 218, 389, 576, 840
SatI	GCNGC	2 cut(s)	252, 771
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	3 cut(s)	125, 706, 776
SchI	GAGTC	1 cut(s)	627
SduI	GDGCHC	2 cut(s)	376, 439
SfaNI	GCATC	3 cut(s)	184, 536, 600
SfcI	CTRYAG	1 cut(s)	771
SfoI	GGCGCC	1 cut(s)	276
SinI	GGWCC	2 cut(s)	125, 706
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SnaBI	TACGTA	1 cut(s)	294
Sse9I	AATT	7 cut(s)	54, 144, 180, 285, 473, 750, 908
SsiI	CCGC	3 cut(s)	40, 232, 359
SspDI	GGCGCC	1 cut(s)	274
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	800
StyI	CCWWGG	2 cut(s)	26, 278
TaaI	ACNGT	2 cut(s)	138, 646
TaiI	ACGT	2 cut(s)	296, 884
TaqI	TCGA	2 cut(s)	189, 621
TasI	AATT	7 cut(s)	54, 144, 180, 285, 473, 750, 908
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	3 cut(s)	212, 458, 684
Tru1I	TTAA	5 cut(s)	164, 218, 389, 576, 840
Tru9I	TTAA	5 cut(s)	164, 218, 389, 576, 840
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	2 cut(s)	251, 770
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	450, 620
TspGWI	ACGGA	1 cut(s)	835
TspRI	CASTG	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	125, 706
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	750
XceI	RCATGY	2 cut(s)	346, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.