Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001974.1

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Reverse (-)

14174 .. 18015

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001974.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgggtttatctgctccagccagtgtgtgcagctctctgggatggaagtcttccagcttgtgcctacagctaggggcccctactcatctcactgcattttcggtttcttctacaacaaaatgtccccaaaagaaagcttctctaacttgctcttcttcctcttcctcgtctgatccactcttggttaaggctgcaagaggggatcctgtaagtcgacctccagcatggatgatgcgccaagcaggaaggtatatggctgtttacagaaagcttgctgagaaatacccatcgttcagagagaggtcagagacaactgatctcatcgtggaaatttctttgcagccttgggaagctttccgccctgatggagtgattatattctctgacatacttacacctctacctgcatttggtgtcccatttgacatagaagatgttagaggtcccgtgatacagtcaccaattacttctgaagagggcttgaagactttgcatccaattgacttggagaaacttcactttgtgggagaatctttaaagatattacggcgggaggttggtgcgaatgctgctgttttgggttttgtaggggcgccttggacaatcgctacgtatatagcaatagcagactatattgttttccaagtagacgcaggggctcattgcatacaaatatttgattcatggggtgggcaattaccaccagccatgtgggaaagctggtcaaagccttatattgaagagattgtgagttctgtgcgaaaaagatgcccagaaacaccacttgttctctacattaatgggaatggtggcctccttgagcggatgaaaggaactggtgtcgatgtgattgggcttgactggacggtggacatggcagatggtagaaaacgattgggtagtggaatcagtgtacagggaaatgtggaccctgcttacttattttctcctcttccgacattgactgaagaaattcaaagggtggtgaggtctgcagggccaagaggacacatcctcaatctagggcatggtgttcttcaacggacaccggaagaagctgttaaacatttctttgaagtggcaagaagcttgaactatgatacgtttcttcaaaaacaaccgcaaaaggaattggtgcattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

381

Amino Acids

41.73

Weight (kDa)

6.72

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	823
AccI	GTMKAC	2 cut(s)	214, 648
AciI	CCGC	4 cut(s)	358, 550, 823, 1121
AclWI	GGATC	3 cut(s)	167, 197, 210
AcsI	RAATTY	2 cut(s)	330, 972
AcuI	CTGAAG	2 cut(s)	492, 987
AcyI	GRCGYC	1 cut(s)	593
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	915
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	7 cut(s)	484, 740, 977, 1040, 1076, 1093, 1112
AluBI	AGCT	9 cut(s)	33, 57, 70, 137, 271, 353, 720, 1058, 1089
AluI	AGCT	9 cut(s)	33, 57, 70, 137, 271, 353, 720, 1058, 1089
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	167, 197, 210
AoxI	GGCC	3 cut(s)	75, 811, 998
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	30, 191, 340, 569
ApoI	RAATTY	2 cut(s)	330, 972
AseI	ATTAAT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	2 cut(s)	237, 595
AspS9I	GGNCC	5 cut(s)	75, 76, 443, 928, 998
AsuHPI	GGTGA	2 cut(s)	450, 997
AvaII	GGWCC	2 cut(s)	443, 928
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	2 cut(s)	79, 661
BbsI	GAAGAC	2 cut(s)	42, 491
BbvI	GCAGC	4 cut(s)	42, 178, 352, 556
BccI	CCATC	4 cut(s)	36, 295, 359, 875
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	750, 784
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	71, 1022
BfmI	CTRYAG	2 cut(s)	65, 993
BfoI	RGCGCY	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	31, 192, 341, 570
BlsI	GCNGC	4 cut(s)	32, 193, 342, 571
Bme18I	GGWCC	2 cut(s)	443, 928
BmgT120I	GGNCC	5 cut(s)	75, 76, 443, 928, 998
BmiI	GGNNCC	7 cut(s)	76, 77, 78, 204, 445, 594, 930
BmsI	GCATC	3 cut(s)	222, 502, 758
BpiI	GAAGAC	2 cut(s)	42, 491
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	839
BsaAI	YACGTR	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	344, 596
BsaWI	WCCGGW	1 cut(s)	1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	3 cut(s)	21, 841, 866
Bse3DI	GCAATG	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	344, 596
BseGI	GGATG	5 cut(s)	47, 234, 493, 831, 1011
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	21, 841, 866
BseRI	GAGGAG	1 cut(s)	939
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	42, 178, 352, 556
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	77, 813, 1000
BshNI	GGYRCC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	1049
BslFI	GGGAC	3 cut(s)	108, 401, 429
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	108, 401, 429
BsmI	GAATGC	2 cut(s)	571, 1138
BsnI	GGCC	3 cut(s)	77, 813, 1000
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	79, 661
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	3 cut(s)	172, 202, 316
BspACI	CCGC	4 cut(s)	358, 550, 823, 1121
BspANI	GGCC	3 cut(s)	77, 813, 1000
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	7 cut(s)	76, 77, 78, 204, 445, 594, 930
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	3 cut(s)	167, 197, 210
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	823
BsrDI	GCAATG	1 cut(s)	661
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	3 cut(s)	21, 841, 866
BssECI	CCNNGG	2 cut(s)	344, 596
BssMI	GATC	3 cut(s)	172, 202, 316
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	344, 596
Bst4CI	ACNGT	2 cut(s)	456, 868
Bst6I	CTCTTC	5 cut(s)	157, 166, 468, 735, 957
BstACI	GRCGYC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	913
BstBAI	YACGTR	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	5 cut(s)	47, 234, 493, 831, 1011
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	237, 595
BstKTI	GATC	3 cut(s)	175, 205, 319
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	172, 202, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstSFI	CTRYAG	2 cut(s)	65, 993
BstSLI	GKGCMC	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	42, 178, 352, 556
BstV2I	GAAGAC	2 cut(s)	42, 491
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	77, 813, 1000
BtsCI	GGATG	5 cut(s)	47, 234, 493, 831, 1011
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	28, 90, 916
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	237, 595
Cfr13I	GGNCC	5 cut(s)	75, 76, 443, 928, 998
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	914
CviAII	CATG	5 cut(s)	225, 684, 709, 874, 1028
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	1 cut(s)	276
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	3 cut(s)	174, 204, 318
DpnII	GATC	3 cut(s)	172, 202, 316
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	523
Eam1104I	CTCTTC	5 cut(s)	157, 166, 468, 735, 957
EarI	CTCTTC	5 cut(s)	157, 166, 468, 735, 957
EciI	GGCGGA	1 cut(s)	347
Eco105I	TACGTA	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	344, 596
Eco24I	GRGCYC	2 cut(s)	79, 661
Eco47I	GGWCC	2 cut(s)	443, 928
Eco57I	CTGAAG	2 cut(s)	492, 987
EcoO109I	RGGNCCY	3 cut(s)	75, 76, 443
EcoT14I	CCWWGG	2 cut(s)	344, 596
EcoT38I	GRGCYC	2 cut(s)	79, 661
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	344, 596
FaeI	CATG	5 cut(s)	228, 687, 712, 877, 1031
FaqI	GGGAC	3 cut(s)	108, 401, 429
FatI	CATG	5 cut(s)	224, 683, 708, 873, 1027
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	214, 648
Fnu4HI	GCNGC	4 cut(s)	31, 192, 341, 570
FokI	GGATG	5 cut(s)	54, 241, 480, 838, 998
FriOI	GRGCYC	2 cut(s)	79, 661
Fsp4HI	GCNGC	4 cut(s)	31, 192, 341, 570
FspBI	CTAG	2 cut(s)	71, 1022
GlaI	GCGC	2 cut(s)	236, 594
GluI	GCNGC	4 cut(s)	31, 192, 341, 570
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	77, 813, 1000
HapII	CCGG	1 cut(s)	1049
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	2 cut(s)	237, 595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	228, 687, 712, 877, 1031
Hin6I	GCGC	2 cut(s)	235, 593
HinP1I	GCGC	2 cut(s)	235, 593
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HindIII	AAGCTT	4 cut(s)	135, 269, 351, 1087
HinfI	GANTC	3 cut(s)	530, 680, 906
HpaII	CCGG	1 cut(s)	1049
HphI	GGTGA	2 cut(s)	450, 997
Hpy166II	GTNNAC	6 cut(s)	215, 262, 649, 871, 914, 928
Hpy188I	TCNGA	6 cut(s)	172, 296, 307, 385, 472, 957
Hpy8I	GTNNAC	6 cut(s)	215, 262, 649, 871, 914, 928
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	456, 868
HpyCH4IV	ACGT	2 cut(s)	611, 1103
HpyCH4V	TGCA	9 cut(s)	30, 95, 194, 340, 407, 493, 666, 995, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	611, 1103
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	5 cut(s)	228, 687, 712, 877, 1031
HspAI	GCGC	2 cut(s)	235, 593
KasI	GGCGCC	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	172, 202, 316
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	4 cut(s)	42, 178, 352, 556
LweI	GCATC	3 cut(s)	222, 502, 758
MaeI	CTAG	2 cut(s)	71, 1022
MaeII	ACGT	2 cut(s)	611, 1103
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	174, 204, 318
MbiI	CCGCTC	1 cut(s)	823
MboI	GATC	3 cut(s)	172, 202, 316
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	79, 661
MluCI	AATT	6 cut(s)	330, 462, 498, 695, 972, 1130
Mly113I	GGCGCC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	980
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	4 cut(s)	186, 536, 798, 1062
MspI	CCGG	1 cut(s)	1049
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	2 cut(s)	571, 1138
MwoI	GCNNNNNNNGC	1 cut(s)	569
NarI	GGCGCC	1 cut(s)	593
NdeII	GATC	3 cut(s)	172, 202, 316
NlaIII	CATG	5 cut(s)	228, 687, 712, 877, 1031
NlaIV	GGNNCC	7 cut(s)	76, 77, 78, 204, 445, 594, 930
NmuCI	GTSAC	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	157
PctI	GAATGC	2 cut(s)	571, 1138
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	3 cut(s)	530, 680, 906
PkrI	GCNGC	4 cut(s)	32, 193, 342, 571
PluTI	GGCGCC	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	612
PpuMI	RGGWCCY	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	443
PspN4I	GGNNCC	7 cut(s)	76, 77, 78, 204, 445, 594, 930
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	5 cut(s)	75, 76, 443, 928, 998
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	997
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
SalI	GTCGAC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	186, 536, 798, 1062
SatI	GCNGC	4 cut(s)	31, 192, 341, 570
Sau3AI	GATC	3 cut(s)	172, 202, 316
Sau96I	GGNCC	5 cut(s)	75, 76, 443, 928, 998
SduI	GDGCHC	2 cut(s)	79, 661
SfaNI	GCATC	3 cut(s)	222, 502, 758
SfcI	CTRYAG	2 cut(s)	65, 993
SfoI	GGCGCC	1 cut(s)	594
SinI	GGWCC	2 cut(s)	443, 928
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	6 cut(s)	330, 462, 498, 695, 972, 1130
SsiI	CCGC	4 cut(s)	358, 550, 823, 1121
SspDI	GGCGCC	1 cut(s)	592
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	2 cut(s)	71, 1022
StyI	CCWWGG	2 cut(s)	344, 596
TaaI	ACNGT	2 cut(s)	456, 868
TaiI	ACGT	2 cut(s)	614, 1106
TaqI	TCGA	2 cut(s)	214, 843
TasI	AATT	6 cut(s)	330, 462, 498, 695, 972, 1130
TatI	WGTACW	1 cut(s)	913
TfiI	GAWTC	3 cut(s)	530, 680, 906
Tru1I	TTAA	4 cut(s)	186, 536, 798, 1062
Tru9I	TTAA	4 cut(s)	186, 536, 798, 1062
TscAI	CASTG	3 cut(s)	28, 97, 916
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	4 cut(s)	30, 191, 340, 569
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	3 cut(s)	672, 842, 1131
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	3 cut(s)	28, 97, 916
VpaK11BI	GGWCC	2 cut(s)	443, 928
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	2 cut(s)	330, 972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XmiI	GTMKAC	2 cut(s)	214, 648
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	71, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.