MD11G1263300.v1.1

Belongs to the uroporphyrinogen decarboxylase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007125
Physical Location & Seq
Reverse (-)
37835250 .. 37838803
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1263300.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGGGTTTATCTGCTCCGGCCAGTGTGAACAGCTCTCTGAGATGGAAATCTTCGAGCTTATTCGTGCAGTCGGGAGCAGCTTCTACTTCTACTTCTCTCACTGGATTCTCGGTTTCTTCCAAAAGAAAATGCCCCCACAGAAAGGTTTCTGTAACATGCTCTTCTTCCTCCTCTTCATCTTCTGATCCACTCTTGGTTAAGGCTGCGAGAGGAGATCCTGTAAGTCGGCCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCAGAGAAGTATCCATCATTCAGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGTCCTGATGGAGTGATTATTTTCTCTGACATACTTACGCCTCTACCTGCATTTGGTGTTCCCTTTGACATAGAAGACGTCAAGGGTCCTGTTATTCAGACACCCATTGTTTCTGAAGAGGGATTGAAGACCTTGCATCCGATTGACTTGGACAAACTGCACTTTGTGGGGGAATCCTTAAAGATACTGCGGCGGGAGGTTGGTGGGCATGCTGCTGTTTTGGGTTTTGTAGGGGCACCCTGGACGATTGCTACATACATAGTAGAAGGGGGTTCAACTTCCACATATACAAAAATAAAGAGCATGTGCCATACAGCACCACATGTATTGAGGGCTCTTCTTTCTCATTTGACTCAAGCAATATCAGACTACATTGTTTTCCAAGTAGAAGCAGGGGCACATTGCATACAAATATTTGATTCATGGGGTGGGCAACTACCACCAGCCATGTGGGATAGCTGGTCGAAGCCTTATATCCAAGAGATCGTGACTTCAGTTAGGAAAAGATGCCCTAAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCCTTCTTGAGCGTATGAAAGGAACTGGCGTAGATGTGATTGGGCTTGACTGGACGGTAGACATAGCTGATGGTAGAAAACGACTGGGTAGTGAGATCAGTGTACAGGGAAATGTGGACCCTGCTTACCTATTTTCTCCTCTTCCTTCCTTGACCGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGGGGACACATCCTCAATCTAGGGCATGGTGTTCTTGTACGGACACCTGAAGAATCTGTTAAACATTTCTTCGAAGTTGCAAGAAGCTTGAATTATGACACATTTCTTGAAACACAAACACCGAGGGAATTGGTAGTGTAG

Protein Analysis

417

Amino Acids

45.59

Weight (kDa)

8.7

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
URO-D PF01208 63 - 399 1.1e-116 Uroporphyrinogen decarboxylase (URO-D)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 978
AciI CCGC 2 cut(s) 559, 562
AclWI GGATC 2 cut(s) 179, 209
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 342, 1080
AcuI CTGAAG 3 cut(s) 504, 846, 1179
AcyI GRCGYC 1 cut(s) 447
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 1023, 1149
AfiI CCNNNNNNNGG 2 cut(s) 142, 422
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 5 cut(s) 496, 645, 1085, 1201, 1220
AjnI CCWGG 1 cut(s) 608
AluBI AGCT 8 cut(s) 33, 57, 80, 283, 365, 828, 986, 1197
AluI AGCT 8 cut(s) 33, 57, 80, 283, 365, 828, 986, 1197
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 179, 209
AoxI GGCC 4 cut(s) 18, 227, 919, 1106
ApeKI GCWGC 4 cut(s) 77, 203, 352, 581
ApoI RAATTY 2 cut(s) 342, 1080
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 2 cut(s) 145, 1080
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 455, 1036, 1106
AsuHPI GGTGA 1 cut(s) 1105
AsuII TTCGAA 1 cut(s) 1182
AvaII GGWCC 2 cut(s) 455, 1036
BaeGI GKGCMC 2 cut(s) 607, 769
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 706
BbsI GAAGAC 2 cut(s) 450, 503
BbvI GCAGC 4 cut(s) 89, 190, 364, 568
BccI CCATC 4 cut(s) 36, 307, 371, 983
BciT130I CCWGG 1 cut(s) 610
BciVI GTATCC 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 1130
BfmI CTRYAG 1 cut(s) 1101
BfuAI ACCTGC 1 cut(s) 424
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 5 cut(s) 78, 204, 353, 560, 582
BlsI GCNGC 5 cut(s) 79, 205, 354, 561, 583
Bme1390I CCNGG 1 cut(s) 610
Bme18I GGWCC 2 cut(s) 455, 1036
BmgT120I GGNCC 3 cut(s) 455, 1036, 1106
BmiI GGNNCC 3 cut(s) 456, 606, 1038
BmrFI CCNGG 1 cut(s) 610
BmrI ACTGGG 1 cut(s) 1013
BmsI GCATC 3 cut(s) 234, 514, 866
BmuI ACTGGG 1 cut(s) 1013
BpiI GAAGAC 2 cut(s) 450, 503
BpmI CTGGAG 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 708, 947
BsaBI GATNNNNATC 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 4 cut(s) 356, 608, 1109, 1232
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 422
Bse1I ACTGG 5 cut(s) 21, 106, 949, 974, 1008
Bse3DI GCAATG 1 cut(s) 769
Bse8I GATNNNNATC 1 cut(s) 46
BseBI CCWGG 1 cut(s) 610
BseDI CCNNGG 4 cut(s) 356, 608, 1109, 1232
BseGI GGATG 3 cut(s) 246, 505, 1119
BseJI GATNNNNATC 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 142, 422
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 5 cut(s) 21, 106, 949, 974, 1008
BseRI GAGGAG 3 cut(s) 160, 225, 1047
BseSI GKGCMC 2 cut(s) 607, 769
BseXI GCAGC 4 cut(s) 89, 190, 364, 568
BsgI GTGCAG 2 cut(s) 86, 512
BshFI GGCC 4 cut(s) 20, 229, 921, 1108
BshNI GGYRCC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 2 cut(s) 142, 422
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 1128
BsnI GGCC 4 cut(s) 20, 229, 921, 1108
Bsp119I TTCGAA 1 cut(s) 1182
Bsp1286I GDGCHC 3 cut(s) 607, 706, 769
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 5 cut(s) 184, 214, 328, 852, 1014
BspACI CCGC 2 cut(s) 559, 562
BspANI GGCC 4 cut(s) 20, 229, 921, 1108
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 456, 606, 1038
BspMAI CTGCAG 1 cut(s) 1105
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 2 cut(s) 179, 209
BspQI GCTCTTC 2 cut(s) 166, 711
BspT104I TTCGAA 1 cut(s) 1182
BspT107I GGYRCC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 769
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 5 cut(s) 21, 106, 949, 974, 1008
BssECI CCNNGG 4 cut(s) 356, 608, 1109, 1232
BssMI GATC 5 cut(s) 184, 214, 328, 852, 1014
BssNI GRCGYC 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 356, 1109
Bst2UI CCWGG 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 976
Bst6I CTCTTC 5 cut(s) 166, 178, 480, 711, 1065
BstACI GRCGYC 1 cut(s) 447
BstAUI TGTACA 1 cut(s) 1021
BstBI TTCGAA 1 cut(s) 1182
BstC8I GCNNGC 2 cut(s) 285, 579
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 246, 505, 1119
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 5 cut(s) 187, 217, 331, 855, 1017
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 5 cut(s) 184, 214, 328, 852, 1014
BstNI CCWGG 1 cut(s) 610
BstNSI RCATGY 4 cut(s) 159, 581, 676, 695
BstSCI CCNGG 1 cut(s) 608
BstSFI CTRYAG 1 cut(s) 1101
BstSLI GKGCMC 2 cut(s) 607, 769
BstV1I GCAGC 4 cut(s) 89, 190, 364, 568
BstV2I GAAGAC 2 cut(s) 450, 503
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 4 cut(s) 20, 229, 921, 1108
BtsCI GGATG 3 cut(s) 246, 505, 1119
BtsIMutI CAGTG 3 cut(s) 28, 99, 1024
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 285, 579
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 3 cut(s) 455, 1036, 1106
Csp6I GTAC 2 cut(s) 1022, 1148
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviAII CATG 8 cut(s) 156, 237, 578, 673, 692, 792, 817, 1136
CviQI GTAC 2 cut(s) 1022, 1148
DdeI CTNAG 1 cut(s) 38
DpnI GATC 5 cut(s) 186, 216, 330, 854, 1016
DpnII GATC 5 cut(s) 184, 214, 328, 852, 1014
DraIII CACNNNGTG 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 5 cut(s) 166, 178, 480, 711, 1065
EarI CTCTTC 5 cut(s) 166, 178, 480, 711, 1065
Eco130I CCWWGG 2 cut(s) 356, 1109
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 455, 1036
Eco57I CTGAAG 3 cut(s) 504, 846, 1179
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 356, 1109
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 356, 1109
FaeI CATG 8 cut(s) 159, 240, 581, 676, 695, 795, 820, 1139
FaqI GGGAC 1 cut(s) 1128
FatI CATG 8 cut(s) 155, 236, 577, 672, 691, 791, 816, 1135
FauI CCCGC 1 cut(s) 555
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 5 cut(s) 78, 204, 353, 560, 582
FokI GGATG 3 cut(s) 253, 492, 1106
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 5 cut(s) 78, 204, 353, 560, 582
FspBI CTAG 1 cut(s) 1130
GlaI GCGC 1 cut(s) 248
GluI GCNGC 5 cut(s) 78, 204, 353, 560, 582
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 4 cut(s) 20, 229, 921, 1108
HapII CCGG 1 cut(s) 17
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 8 cut(s) 159, 240, 581, 676, 695, 795, 820, 1139
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HindIII AAGCTT 3 cut(s) 281, 363, 1195
HinfI GANTC 5 cut(s) 105, 542, 721, 788, 1163
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 1105
Hpy166II GTNNAC 5 cut(s) 28, 274, 979, 1022, 1036
Hpy188I TCNGA 9 cut(s) 39, 184, 308, 319, 397, 468, 484, 510, 736
Hpy188III TCNNGA 5 cut(s) 72, 374, 856, 926, 1217
Hpy8I GTNNAC 5 cut(s) 28, 274, 979, 1022, 1036
HpyAV CCTTC 4 cut(s) 252, 629, 932, 1074
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 9 cut(s) 67, 287, 352, 419, 505, 529, 774, 1103, 1190
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 447
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 8 cut(s) 159, 240, 581, 676, 695, 795, 820, 1139
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 5 cut(s) 184, 214, 328, 852, 1014
LguI GCTCTTC 2 cut(s) 166, 711
LmnI GCTCC 2 cut(s) 19, 74
Lsp1109I GCAGC 4 cut(s) 89, 190, 364, 568
LweI GCATC 3 cut(s) 234, 514, 866
MaeI CTAG 1 cut(s) 1130
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 151, 856
MalI GATC 5 cut(s) 186, 216, 330, 854, 1016
MboI GATC 5 cut(s) 184, 214, 328, 852, 1014
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 3 cut(s) 607, 706, 769
MluCI AATT 4 cut(s) 342, 1080, 1201, 1238
MlyI GAGTC 1 cut(s) 715
MroXI GAANNNNTTC 2 cut(s) 145, 1080
MseI TTAA 4 cut(s) 198, 548, 906, 1170
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 610
MvaI CCWGG 1 cut(s) 610
NdeII GATC 5 cut(s) 184, 214, 328, 852, 1014
NlaIII CATG 8 cut(s) 159, 240, 581, 676, 695, 795, 820, 1139
NlaIV GGNNCC 3 cut(s) 456, 606, 1038
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 4 cut(s) 159, 581, 676, 695
NspV TTCGAA 1 cut(s) 1182
PaeI GCATGC 1 cut(s) 581
PciI ACATGT 1 cut(s) 691
PciSI GCTCTTC 2 cut(s) 166, 711
PdmI GAANNNNTTC 2 cut(s) 145, 1080
PfeI GAWTC 4 cut(s) 105, 542, 788, 1163
PkrI GCNGC 5 cut(s) 79, 205, 354, 561, 583
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PpuMI RGGWCCY 1 cut(s) 455
PscI ACATGT 1 cut(s) 691
PshBI ATTAAT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 608
PspGI CCWGG 1 cut(s) 608
PspN4I GGNNCC 3 cut(s) 456, 606, 1038
PspPI GGNCC 3 cut(s) 455, 1036, 1106
PspPPI RGGWCCY 1 cut(s) 455
PstI CTGCAG 1 cut(s) 1105
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 1023, 1149
RsaNI GTAC 2 cut(s) 1022, 1148
SapI GCTCTTC 2 cut(s) 166, 711
SaqAI TTAA 4 cut(s) 198, 548, 906, 1170
SatI GCNGC 5 cut(s) 78, 204, 353, 560, 582
Sau3AI GATC 5 cut(s) 184, 214, 328, 852, 1014
Sau96I GGNCC 3 cut(s) 455, 1036, 1106
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 610
SduI GDGCHC 3 cut(s) 607, 706, 769
SfaNI GCATC 3 cut(s) 234, 514, 866
SfcI CTRYAG 1 cut(s) 1101
SfuI TTCGAA 1 cut(s) 1182
SinI GGWCC 2 cut(s) 455, 1036
SmlI CTYRAG 2 cut(s) 723, 926
SmoI CTYRAG 2 cut(s) 723, 926
SphI GCATGC 1 cut(s) 581
Sse9I AATT 4 cut(s) 342, 1080, 1201, 1238
SsiI CCGC 2 cut(s) 559, 562
SspI AATATT 1 cut(s) 783
SspMI CTAG 1 cut(s) 1130
StyD4I CCNGG 1 cut(s) 608
StyI CCWWGG 2 cut(s) 356, 1109
TaaI ACNGT 1 cut(s) 976
TaiI ACGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 53, 833, 1182
TaqII GACCGA 1 cut(s) 1088
TasI AATT 4 cut(s) 342, 1080, 1201, 1238
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 4 cut(s) 105, 542, 788, 1163
Tru1I TTAA 4 cut(s) 198, 548, 906, 1170
Tru9I TTAA 4 cut(s) 198, 548, 906, 1170
TscAI CASTG 3 cut(s) 28, 106, 1024
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 4 cut(s) 77, 203, 352, 581
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 3 cut(s) 165, 780, 950
TspGWI ACGGA 2 cut(s) 359, 1165
TspRI CASTG 3 cut(s) 28, 106, 1024
VpaK11BI GGWCC 2 cut(s) 455, 1036
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 2 cut(s) 342, 1080
XceI RCATGY 4 cut(s) 159, 581, 676, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmiI GTMKAC 1 cut(s) 978
XmnI GAANNNNTTC 2 cut(s) 145, 1080
XspI CTAG 1 cut(s) 1130
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.