Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

25625936 .. 25629678

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGGTTTATCTGCTCCAGCCAGTGTGTGCAGCTCTCTGGGATGGAAGTCTTCCAGCTTGTGCCTACAGCTAGGGGCCCCTACTCATCTCACTGCATTTTCGGTTTCTTCTACAACAAAATGTCCCCAAAAGAAAGCTTCTCTAACTTGCTCTTCTTCCTCTTCCTCGTCTGATCCACTCTTGGTTAAGGCTGCAAGAGGAGATCCTGTAAGTCGACCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCTGAGAAATACCCATCGTTCAGAGAGAGGTCAGAGACAACTGATCTCATCGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGCCCTGATGGAGTGATTATATTCTCTGACATACTTACACCTCTACCTGCATTTGGTGTCCCATTTGACATAGAAGATGTTAGAGGTCCCGTGATACAGTCACCAATTACTTCTGAAGAGGGCTTGAAGACTTTGCATCCAATTGACTTGGAGAAACTTCACTTTGTGGGAGAATCTTTAAAGATATTACGGCGGGAGGTTGGTGCGAATGCTGCTGTTTTGGGTTTTGTAGGGGCGCCTTGGACAATCGCTACGTATATAGTAGAAGGGGGTTCAACTTCCACATATACAACCATAAAGAGCATGTGCCATACAGCACCGCATGTATTGAGGGCTCTGCTTTCTCATTTAACACAGGCAATAGCAGACTATATTGTTTTCCAAGTAGATGCAGGGGCTCATTGCATACAAATATTTGATTCATGGGGTGGGCAATTACCACCAGCCATGTGGGAAAGCTGGTCAAAGCCTTATATTGAAGAGATTGTGAGTTCTGTGCGAAAAAGATGCCCAGAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCCTCCTTGAGCGGATGAAAGGAACTGGTGTCGATGTGATTGGGCTTGACTGGACGGTGGACATGGCAGATGGTAGAAAACGATTGGGTAGTGGAATCAGTGTACAGGGAAATGTGGACCCTGCTTACTTATTTTCTCCTCTTCCGACATTGACTGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGAGGACACATCCTCAATCTAGGGCATGGTGTTCTTCAACGGACACCGGAAGAAGCTGTTAAACATTTCTTTGAAGTGGCAAGAAGCTTGAACTATGATACGTTTCTTCAAAAACAACCGCAAAAGGAATTGGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

412

Amino Acids

45.0

Weight (kDa)

7.14

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	59 - 395	1.6e-116	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	919
AccI	GTMKAC	1 cut(s)	214
AciI	CCGC	5 cut(s)	358, 550, 677, 919, 1217
AclWI	GGATC	2 cut(s)	167, 197
AcsI	RAATTY	2 cut(s)	330, 1068
AcuI	CTGAAG	2 cut(s)	492, 1083
AcyI	GRCGYC	1 cut(s)	593
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	1011
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	8 cut(s)	484, 633, 836, 1073, 1136, 1172, 1189, 1208
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	167, 197
AoxI	GGCC	3 cut(s)	75, 907, 1094
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	30, 191, 340, 569
ApoI	RAATTY	2 cut(s)	330, 1068
AseI	ATTAAT	1 cut(s)	894
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	2 cut(s)	237, 595
AspS9I	GGNCC	5 cut(s)	75, 76, 443, 1024, 1094
AsuHPI	GGTGA	2 cut(s)	450, 1093
AvaII	GGWCC	2 cut(s)	443, 1024
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	3 cut(s)	79, 694, 757
BbsI	GAAGAC	2 cut(s)	42, 491
BbvI	GCAGC	4 cut(s)	42, 178, 352, 556
BccI	CCATC	4 cut(s)	36, 295, 359, 971
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	846, 880
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	71, 1118
BfmI	CTRYAG	2 cut(s)	65, 1089
BfoI	RGCGCY	1 cut(s)	596
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	31, 192, 341, 570
BlsI	GCNGC	4 cut(s)	32, 193, 342, 571
Bme18I	GGWCC	2 cut(s)	443, 1024
BmgT120I	GGNCC	5 cut(s)	75, 76, 443, 1024, 1094
BmiI	GGNNCC	6 cut(s)	76, 77, 78, 445, 594, 1026
BmsI	GCATC	4 cut(s)	222, 502, 736, 854
BpiI	GAAGAC	2 cut(s)	42, 491
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	935
BsaAI	YACGTR	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	344, 596
BsaWI	WCCGGW	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	3 cut(s)	21, 937, 962
Bse3DI	GCAATG	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	344, 596
BseGI	GGATG	5 cut(s)	47, 234, 493, 927, 1107
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	3 cut(s)	21, 937, 962
BseRI	GAGGAG	2 cut(s)	213, 1035
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	42, 178, 352, 556
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	77, 909, 1096
BshNI	GGYRCC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	1145
BslFI	GGGAC	3 cut(s)	108, 401, 429
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	108, 401, 429
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	77, 909, 1096
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	79, 694, 757
Bsp1407I	TGTACA	1 cut(s)	1009
Bsp143I	GATC	3 cut(s)	172, 202, 316
BspACI	CCGC	5 cut(s)	358, 550, 677, 919, 1217
BspANI	GGCC	3 cut(s)	77, 909, 1096
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	6 cut(s)	76, 77, 78, 445, 594, 1026
BspMAI	CTGCAG	1 cut(s)	1093
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	167, 197
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	919
BsrDI	GCAATG	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	1009
BsrI	ACTGG	3 cut(s)	21, 937, 962
BssECI	CCNNGG	2 cut(s)	344, 596
BssMI	GATC	3 cut(s)	172, 202, 316
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	344, 596
Bst4CI	ACNGT	2 cut(s)	456, 964
Bst6I	CTCTTC	5 cut(s)	157, 166, 468, 831, 1053
BstACI	GRCGYC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	1009
BstBAI	YACGTR	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	276, 1236
BstF5I	GGATG	5 cut(s)	47, 234, 493, 927, 1107
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	2 cut(s)	237, 595
BstKTI	GATC	3 cut(s)	175, 205, 319
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	172, 202, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNSI	RCATGY	2 cut(s)	664, 683
BstSFI	CTRYAG	2 cut(s)	65, 1089
BstSLI	GKGCMC	1 cut(s)	79
BstSNI	TACGTA	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	42, 178, 352, 556
BstV2I	GAAGAC	2 cut(s)	42, 491
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	77, 909, 1096
BtsCI	GGATG	5 cut(s)	47, 234, 493, 927, 1107
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	28, 90, 1012
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	237, 595
Cfr13I	GGNCC	5 cut(s)	75, 76, 443, 1024, 1094
Csp6I	GTAC	1 cut(s)	1010
CviAII	CATG	7 cut(s)	225, 661, 680, 780, 805, 970, 1124
CviQI	GTAC	1 cut(s)	1010
DdeI	CTNAG	2 cut(s)	276, 1236
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	3 cut(s)	174, 204, 318
DpnII	GATC	3 cut(s)	172, 202, 316
DraI	TTTAAA	1 cut(s)	537
DraIII	CACNNNGTG	1 cut(s)	523
Eam1104I	CTCTTC	5 cut(s)	157, 166, 468, 831, 1053
EarI	CTCTTC	5 cut(s)	157, 166, 468, 831, 1053
EciI	GGCGGA	1 cut(s)	347
Eco105I	TACGTA	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	344, 596
Eco24I	GRGCYC	3 cut(s)	79, 694, 757
Eco47I	GGWCC	2 cut(s)	443, 1024
Eco57I	CTGAAG	2 cut(s)	492, 1083
EcoO109I	RGGNCCY	3 cut(s)	75, 76, 443
EcoT14I	CCWWGG	2 cut(s)	344, 596
EcoT38I	GRGCYC	3 cut(s)	79, 694, 757
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	2 cut(s)	344, 596
FaeI	CATG	7 cut(s)	228, 664, 683, 783, 808, 973, 1127
FaqI	GGGAC	3 cut(s)	108, 401, 429
FatI	CATG	7 cut(s)	224, 660, 679, 779, 804, 969, 1123
FauI	CCCGC	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	31, 192, 341, 570
FokI	GGATG	5 cut(s)	54, 241, 480, 934, 1094
FriOI	GRGCYC	3 cut(s)	79, 694, 757
Fsp4HI	GCNGC	4 cut(s)	31, 192, 341, 570
FspBI	CTAG	2 cut(s)	71, 1118
GlaI	GCGC	2 cut(s)	236, 594
GluI	GCNGC	4 cut(s)	31, 192, 341, 570
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	3 cut(s)	77, 909, 1096
HapII	CCGG	1 cut(s)	1145
HhaI	GCGC	2 cut(s)	237, 595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	7 cut(s)	228, 664, 683, 783, 808, 973, 1127
Hin6I	GCGC	2 cut(s)	235, 593
HinP1I	GCGC	2 cut(s)	235, 593
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HindIII	AAGCTT	4 cut(s)	135, 269, 351, 1183
HinfI	GANTC	3 cut(s)	530, 776, 1002
HpaII	CCGG	1 cut(s)	1145
HphI	GGTGA	2 cut(s)	450, 1093
Hpy166II	GTNNAC	5 cut(s)	215, 262, 967, 1010, 1024
Hpy188I	TCNGA	6 cut(s)	172, 296, 307, 385, 472, 1053
Hpy8I	GTNNAC	5 cut(s)	215, 262, 967, 1010, 1024
HpyAV	CCTTC	2 cut(s)	240, 617
HpyCH4III	ACNGT	2 cut(s)	456, 964
HpyCH4IV	ACGT	2 cut(s)	611, 1199
HpyCH4V	TGCA	9 cut(s)	30, 95, 194, 340, 407, 493, 749, 762, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	2 cut(s)	276, 1236
HpySE526I	ACGT	2 cut(s)	611, 1199
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	7 cut(s)	228, 664, 683, 783, 808, 973, 1127
HspAI	GCGC	2 cut(s)	235, 593
KasI	GGCGCC	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	172, 202, 316
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	4 cut(s)	42, 178, 352, 556
LweI	GCATC	4 cut(s)	222, 502, 736, 854
MaeI	CTAG	2 cut(s)	71, 1118
MaeII	ACGT	2 cut(s)	611, 1199
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	3 cut(s)	174, 204, 318
MbiI	CCGCTC	1 cut(s)	919
MboI	GATC	3 cut(s)	172, 202, 316
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	3 cut(s)	79, 694, 757
MluCI	AATT	6 cut(s)	330, 462, 498, 791, 1068, 1226
Mly113I	GGCGCC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	1076
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	5 cut(s)	186, 536, 707, 894, 1158
MspI	CCGG	1 cut(s)	1145
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	1 cut(s)	569
NarI	GGCGCC	1 cut(s)	593
NdeII	GATC	3 cut(s)	172, 202, 316
NlaIII	CATG	7 cut(s)	228, 664, 683, 783, 808, 973, 1127
NlaIV	GGNNCC	6 cut(s)	76, 77, 78, 445, 594, 1026
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	2 cut(s)	664, 683
PciSI	GCTCTTC	1 cut(s)	157
PctI	GAATGC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	3 cut(s)	530, 776, 1002
PkrI	GCNGC	4 cut(s)	32, 193, 342, 571
PluTI	GGCGCC	1 cut(s)	596
Ppu21I	YACGTR	1 cut(s)	612
PpuMI	RGGWCCY	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	443
PspN4I	GGNNCC	6 cut(s)	76, 77, 78, 445, 594, 1026
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	5 cut(s)	75, 76, 443, 1024, 1094
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	1011
RsaNI	GTAC	1 cut(s)	1010
SalI	GTCGAC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	5 cut(s)	186, 536, 707, 894, 1158
SatI	GCNGC	4 cut(s)	31, 192, 341, 570
Sau3AI	GATC	3 cut(s)	172, 202, 316
Sau96I	GGNCC	5 cut(s)	75, 76, 443, 1024, 1094
SduI	GDGCHC	3 cut(s)	79, 694, 757
SfaNI	GCATC	4 cut(s)	222, 502, 736, 854
SfcI	CTRYAG	2 cut(s)	65, 1089
SfoI	GGCGCC	1 cut(s)	594
SinI	GGWCC	2 cut(s)	443, 1024
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	6 cut(s)	330, 462, 498, 791, 1068, 1226
SsiI	CCGC	5 cut(s)	358, 550, 677, 919, 1217
SspDI	GGCGCC	1 cut(s)	592
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	2 cut(s)	71, 1118
StyI	CCWWGG	2 cut(s)	344, 596
TaaI	ACNGT	2 cut(s)	456, 964
TaiI	ACGT	2 cut(s)	614, 1202
TaqI	TCGA	2 cut(s)	214, 939
TasI	AATT	6 cut(s)	330, 462, 498, 791, 1068, 1226
TatI	WGTACW	1 cut(s)	1009
TfiI	GAWTC	3 cut(s)	530, 776, 1002
Tru1I	TTAA	5 cut(s)	186, 536, 707, 894, 1158
Tru9I	TTAA	5 cut(s)	186, 536, 707, 894, 1158
TscAI	CASTG	3 cut(s)	28, 97, 1012
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	4 cut(s)	30, 191, 340, 569
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	2 cut(s)	768, 938
TspGWI	ACGGA	1 cut(s)	1153
TspRI	CASTG	3 cut(s)	28, 97, 1012
VpaK11BI	GGWCC	2 cut(s)	443, 1024
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	2 cut(s)	330, 1068
XceI	RCATGY	2 cut(s)	664, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	804
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	2 cut(s)	71, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.