Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Reverse (-)

19784853 .. 19787613

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGTTTATCCGCTCCGGCCAGTGTGAACAGCTCTCTGGGATGGAAGTCATCGAGCTTGTTCGTGCGGTCAGGGGCAACTTCTACTTCTACTGCTGTCACTGGATTCTCGGCTCCTTCCAAAAGAAAATGCCCCCACAGAAAGGTTTCTGTAACATGCTCTTCCTCTTCTGATCCACTCTTGGTTAAGGCTGCAAGAGGATCGATCCTGGACGTAAGTCGGCCTCCAGCATGGATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCAGAGAAATATCCATCGTTCAGAGAGAGGTCAGAGACAACTGACCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGTCCTGATGGAGTGATTATTTTCTCTGACATACTTACGCCTCTACCTGCATTTGGTGTTCCCTTTGACATAGAGGACGTCAGGGGTCCTGTTATTCAGTCACCCATCGTCTCTGAAGAGGGCTTGAAGACCTTGCATCCGATTGACTTGGACAAACTACACTTTGTGGGGGAATCCTTAAAGATACTGCGGCGGGAGGTTGGTGGGCATGCTGCTGTTTTGGGTTTCGTAGGGGCACCATGGACGATTGCTACATACATAGTAGAAGGGGGTTCAACTTCCACGTATACAAAAATAAAGAGCATGTGCCATACATCACCACATGTATTGAGGGCTCTTCTTTCGCATTTGACTCAGGCAATATCAGACTATATTGTTTTCCAAGTAGAAGCAGGGGCACATTGCATACAAATATTTGATTCATGGGGTGGGCAACTACCACCAGCCATGTGGGATAGCTGGTCGAAGCCTTATATTCAAGAGATCGTGACTTCAGTAAGGAAAAGATGCCCTAAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCATTCTTGAGCGCATGAAAGGAACTGGTGTAGACGTGATTGGGCTCGATTGGACGGTAGACATAGCTGATGGTAGAAAACGGTTGGGTAGTGAGATCGAGTGTACAGGGAAATGTGGATCCTGCTTACCTATTTTCTCCTCTTCCTTCCTTGACCGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGGGGACACATTCTCAATCTAGGGCATGGTGTTCTAGTAAGGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

385

Amino Acids

41.85

Weight (kDa)

9.11

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	60 - 342	3.4e-92	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	3 cut(s)	650, 945, 972
AciI	CCGC	4 cut(s)	12, 67, 553, 556
AclWI	GGATC	5 cut(s)	167, 199, 208, 1026, 1039
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	336, 1075
AcuI	CTGAAG	2 cut(s)	498, 840
AcyI	GRCGYC	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	529
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	3 cut(s)	142, 331, 416
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	4 cut(s)	490, 639, 842, 1080
AjiI	CACGTC	1 cut(s)	949
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	6 cut(s)	33, 57, 277, 359, 822, 980
AluI	AGCT	6 cut(s)	33, 57, 277, 359, 822, 980
Alw26I	GTCTC	2 cut(s)	308, 478
AlwI	GGATC	5 cut(s)	167, 199, 208, 1026, 1039
AoxI	GGCC	3 cut(s)	18, 221, 1101
ApeKI	GCWGC	3 cut(s)	191, 346, 575
ApoI	RAATTY	2 cut(s)	336, 1075
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	2 cut(s)	145, 1075
AspLEI	GCGC	2 cut(s)	243, 927
AspS9I	GGNCC	2 cut(s)	449, 1101
AsuHPI	GGTGA	3 cut(s)	456, 672, 1100
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	2 cut(s)	601, 763
BamHI	GGATCC	1 cut(s)	1031
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	2 cut(s)	700, 960
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	178, 358, 562
BccI	CCATC	5 cut(s)	36, 301, 365, 476, 977
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	308, 478
BfaI	CTAG	2 cut(s)	1125, 1140
BfmI	CTRYAG	1 cut(s)	1096
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	192, 347, 554, 576
BlsI	GCNGC	4 cut(s)	193, 348, 555, 577
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	949
BmgT120I	GGNCC	2 cut(s)	449, 1101
BmiI	GGNNCC	4 cut(s)	114, 450, 600, 1033
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	228, 508, 860
BoxI	GACNNNNGTC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	648
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	350, 602, 1104
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 331, 416
Bse1I	ACTGG	3 cut(s)	21, 106, 943
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	203
BseDI	CCNNGG	3 cut(s)	350, 602, 1104
BseGI	GGATG	3 cut(s)	47, 240, 499
BseLI	CCNNNNNNNGG	3 cut(s)	142, 331, 416
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	3 cut(s)	21, 106, 943
BseRI	GAGGAG	1 cut(s)	1042
BseSI	GKGCMC	2 cut(s)	601, 763
BseXI	GCAGC	3 cut(s)	178, 358, 562
BshFI	GGCC	3 cut(s)	20, 223, 1103
BshNI	GGYRCC	1 cut(s)	598
BshVI	ATCGAT	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	1123
BslI	CCNNNNNNNGG	3 cut(s)	142, 331, 416
BsmAI	GTCTC	2 cut(s)	308, 478
BsmBI	CGTCTC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	1123
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	3 cut(s)	20, 223, 1103
Bsp1286I	GDGCHC	4 cut(s)	601, 700, 763, 960
Bsp1407I	TGTACA	1 cut(s)	1016
Bsp143I	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	4 cut(s)	12, 67, 553, 556
BspANI	GGCC	3 cut(s)	20, 223, 1103
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	1 cut(s)	203
BspLI	GGNNCC	4 cut(s)	114, 450, 600, 1033
BspMAI	CTGCAG	1 cut(s)	1100
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	5 cut(s)	167, 199, 208, 1026, 1039
BspQI	GCTCTTC	2 cut(s)	166, 705
BspT107I	GGYRCC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	763
BsrGI	TGTACA	1 cut(s)	1016
BsrI	ACTGG	3 cut(s)	21, 106, 943
BssECI	CCNNGG	3 cut(s)	350, 602, 1104
BssMI	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
BssNAI	GTATAC	1 cut(s)	651
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	3 cut(s)	350, 602, 1104
Bst1107I	GTATAC	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	970, 996
Bst6I	CTCTTC	5 cut(s)	166, 172, 474, 705, 1060
BstACI	GRCGYC	1 cut(s)	441
BstAUI	TGTACA	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	279, 573
BstDEI	CTNAG	1 cut(s)	717
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	47, 240, 499
BstHHI	GCGC	2 cut(s)	243, 927
BstKTI	GATC	6 cut(s)	175, 203, 207, 849, 1011, 1034
BstMAI	GTCTC	2 cut(s)	308, 478
BstMBI	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	4 cut(s)	159, 575, 670, 689
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	1096
BstSLI	GKGCMC	2 cut(s)	601, 763
BstV1I	GCAGC	3 cut(s)	178, 358, 562
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	1031
BstXI	CCANNNNNNTGG	1 cut(s)	813
BstYI	RGATCY	1 cut(s)	1031
BstZ17I	GTATAC	1 cut(s)	651
Bsu15I	ATCGAT	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	20, 223, 1103
BsuTUI	ATCGAT	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	949
BtsCI	GGATG	3 cut(s)	47, 240, 499
BtsIMutI	CAGTG	2 cut(s)	28, 99
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	279, 573
CfoI	GCGC	2 cut(s)	243, 927
Cfr13I	GGNCC	2 cut(s)	449, 1101
ClaI	ATCGAT	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	1017
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	6 cut(s)	174, 202, 206, 848, 1010, 1033
DpnII	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
DraIII	CACNNNGTG	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	5 cut(s)	166, 172, 474, 705, 1060
EarI	CTCTTC	5 cut(s)	166, 172, 474, 705, 1060
Eco130I	CCWWGG	3 cut(s)	350, 602, 1104
Eco24I	GRGCYC	2 cut(s)	700, 960
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	498, 840
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	3 cut(s)	350, 602, 1104
EcoT38I	GRGCYC	2 cut(s)	700, 960
ErhI	CCWWGG	3 cut(s)	350, 602, 1104
Esp3I	CGTCTC	1 cut(s)	478
FaqI	GGGAC	1 cut(s)	1123
FauI	CCCGC	1 cut(s)	549
FblI	GTMKAC	3 cut(s)	650, 945, 972
Fnu4HI	GCNGC	4 cut(s)	192, 347, 554, 576
FokI	GGATG	3 cut(s)	54, 247, 486
FriOI	GRGCYC	2 cut(s)	700, 960
Fsp4HI	GCNGC	4 cut(s)	192, 347, 554, 576
FspBI	CTAG	2 cut(s)	1125, 1140
GlaI	GCGC	2 cut(s)	242, 926
GluI	GCNGC	4 cut(s)	192, 347, 554, 576
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	20, 223, 1103
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	2 cut(s)	243, 927
Hin1I	GRCGYC	1 cut(s)	441
Hin6I	GCGC	2 cut(s)	241, 925
HinP1I	GCGC	2 cut(s)	241, 925
HindIII	AAGCTT	2 cut(s)	275, 357
HinfI	GANTC	4 cut(s)	105, 536, 715, 782
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	3 cut(s)	456, 672, 1100
Hpy166II	GTNNAC	6 cut(s)	28, 268, 651, 946, 973, 1017
Hpy188I	TCNGA	7 cut(s)	172, 302, 313, 391, 478, 504, 730
Hpy188III	TCNNGA	4 cut(s)	368, 842, 850, 920
Hpy8I	GTNNAC	6 cut(s)	28, 268, 651, 946, 973, 1017
HpyAV	CCTTC	4 cut(s)	126, 246, 623, 1069
HpyCH4III	ACNGT	2 cut(s)	970, 996
HpyCH4IV	ACGT	4 cut(s)	213, 441, 647, 948
HpyCH4V	TGCA	7 cut(s)	194, 281, 346, 413, 499, 768, 1098
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	4 cut(s)	213, 441, 647, 948
Hsp92I	GRCGYC	1 cut(s)	441
HspAI	GCGC	2 cut(s)	241, 925
Kzo9I	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
LguI	GCTCTTC	2 cut(s)	166, 705
LmnI	GCTCC	2 cut(s)	19, 118
Lsp1109I	GCAGC	3 cut(s)	178, 358, 562
LweI	GCATC	3 cut(s)	228, 508, 860
MaeI	CTAG	2 cut(s)	1125, 1140
MaeII	ACGT	4 cut(s)	213, 441, 647, 948
MaeIII	GTNAC	4 cut(s)	97, 151, 462, 850
MalI	GATC	6 cut(s)	174, 202, 206, 848, 1010, 1033
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
MboII	GAAGA	7 cut(s)	153, 159, 491, 502, 692, 1047, 1083
MflI	RGATCY	1 cut(s)	1031
MhlI	GDGCHC	4 cut(s)	601, 700, 763, 960
MluCI	AATT	2 cut(s)	336, 1075
MlyI	GAGTC	1 cut(s)	709
MroXI	GAANNNNTTC	2 cut(s)	145, 1075
MseI	TTAA	3 cut(s)	186, 542, 900
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
NlaIV	GGNNCC	4 cut(s)	114, 450, 600, 1033
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	3 cut(s)	97, 462, 850
NspI	RCATGY	4 cut(s)	159, 575, 670, 689
PaeI	GCATGC	1 cut(s)	575
PciI	ACATGT	1 cut(s)	685
PciSI	GCTCTTC	2 cut(s)	166, 705
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	2 cut(s)	145, 1075
PfeI	GAWTC	3 cut(s)	105, 536, 782
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	193, 348, 555, 577
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	1 cut(s)	648
PpuMI	RGGWCCY	1 cut(s)	449
PscI	ACATGT	1 cut(s)	685
PshAI	GACNNNNGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	900
Psp5II	RGGWCCY	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	114, 450, 600, 1033
PspPI	GGNCC	2 cut(s)	449, 1101
PspPPI	RGGWCCY	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	1100
PsuI	RGATCY	1 cut(s)	1031
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
SapI	GCTCTTC	2 cut(s)	166, 705
SaqAI	TTAA	3 cut(s)	186, 542, 900
SatI	GCNGC	4 cut(s)	192, 347, 554, 576
Sau3AI	GATC	6 cut(s)	172, 200, 204, 846, 1008, 1031
Sau96I	GGNCC	2 cut(s)	449, 1101
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	4 cut(s)	601, 700, 763, 960
SfaNI	GCATC	3 cut(s)	228, 508, 860
SfcI	CTRYAG	1 cut(s)	1096
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	2 cut(s)	336, 1075
SsiI	CCGC	4 cut(s)	12, 67, 553, 556
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	2 cut(s)	1125, 1140
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	3 cut(s)	350, 602, 1104
TaaI	ACNGT	2 cut(s)	970, 996
TaiI	ACGT	4 cut(s)	216, 444, 650, 951
TaqI	TCGA	5 cut(s)	53, 203, 827, 960, 1011
TaqII	GACCGA	1 cut(s)	1083
TasI	AATT	2 cut(s)	336, 1075
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	3 cut(s)	105, 536, 782
Tru1I	TTAA	3 cut(s)	186, 542, 900
Tru9I	TTAA	3 cut(s)	186, 542, 900
TscAI	CASTG	2 cut(s)	28, 106
TseFI	GTSAC	3 cut(s)	97, 462, 850
TseI	GCWGC	3 cut(s)	191, 346, 575
Tsp45I	GTSAC	3 cut(s)	97, 462, 850
TspDTI	ATGAA	2 cut(s)	774, 944
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	28, 106
VpaK11BI	GGWCC	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	2 cut(s)	336, 1075
XceI	RCATGY	4 cut(s)	159, 575, 670, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	810
XmiI	GTMKAC	3 cut(s)	650, 945, 972
XmnI	GAANNNNTTC	2 cut(s)	145, 1075
XspI	CTAG	2 cut(s)	1125, 1140
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.