Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007125

Physical Location & Seq

Genomic Coordinates Forward (+)

25323779 .. 25328124

Gene Structure 4346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGCGCCAAGCAGGAAGGTATATGGCTGTTTACAGAAAGCTTGCTGAGAAATACCCATCGTTCAGAGAGAGGTCAGAGACAACTGATCTCATCGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTCCGCCCTGATGGAGTGATTATATTCTCTGACATACTTACACCTCTACCTGCATTTGGTGTCCCATTTGACATAGAAGATGTTAGAGGTCCCGTGATACAGTCACCAATTACTTCTGAAGAGGGCTTGAAGACTTTGCATCCAATTGACTTGGAGAAACTTCACTTTGTGGGAGAATCTTTAAAGATATTACGGCGGGAGGTTGGTGCGAATGCTGCTGTTTTGGGTTTTGTAGGGGCGCCTTGGACAATCGCTACGTATATAGTAGAAGGGGGTTCAACTTCCACATATACAAGCATAAAGAGCATGTGCCATACAGCACCGCATGTATTGAGGGCTCTGCTTTCTCATTTAACACAGGCAATAGCAGACTATATTGTTTTCCAAGTAGACGCAGGGGCTCATTGCATACAAATATTTGATTCATGGGGTGGGCAATTACCACCAGCCATGTGGGAAAGCTGGTCAAAGCCTTATATTGAAGAGATTGTGAGTTCTGTGCGAAAAAGATGCCCAGAAACACCACTTGTTCTCTACATTAATGGGAATGGTGGCCTCCTTGAGCGGATGAAAGGAACTGGTGTCGATGTGATTGGGCTTGACTGGACGGTGGACATGGCAGATGGTAGAAAACGATTGGGTAGTGGAATCAGTGTACAGGGAAATGTGGACCCTGCTTACTTATTTTCTCCTCTTCCGACATTGACTGAAGAAATTCAAAGGGTGGTGAGGTCTGCAGGGCCAAGAGGACACATCCTCAATCTAGGGCATGGTGTTCTTCAACGGACACCGGAAGAAGCTGTTAAACATTTCTTTGAAGTGGCAAGAAGCTTGAACTATGATACGTTTCTTCAAAAACAACCGCAAAAGGAATTGGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004853 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0046686 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

URO-D

Protein Analysis

336

Amino Acids

37.3

Weight (kDa)

6.01

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
URO-D	PF01208	1 - 319	2.4e-108	Uroporphyrinogen decarboxylase (URO-D)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14930 AT3G14930 AT3G14930
fragaria_vesca	FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330 FvH4_3g18330
malus_domestica	MD03G1242800.v1.1 MD11G1263300.v1.1
prunus_persica	Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1 Prupe.4G165200_v2.0.a1
pyrus_communis	pycom03g18990 pycom11g23190
rosa_chinensis	RchiOBHm_Chr5g0030981
rosa_laevigata	RLG00000033278
rosa_multiflora	Rmu_sc0001974.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049270
rosa_rugosa	Rorug05G0122000
rosa_samantha	Rh5AG215300 Rh5BG214300 Rh5CG238200 Rh5DG218900
rosa_wichuraiana	Rw5G019690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	5 cut(s)	130, 322, 449, 691, 989
AcsI	RAATTY	2 cut(s)	102, 840
AcuI	CTGAAG	2 cut(s)	264, 855
AcyI	GRCGYC	1 cut(s)	365
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	8 cut(s)	256, 405, 608, 845, 908, 944, 961, 980
AluBI	AGCT	6 cut(s)	43, 125, 588, 926, 957, 1007
AluI	AGCT	6 cut(s)	43, 125, 588, 926, 957, 1007
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	2 cut(s)	679, 866
ApeKI	GCWGC	2 cut(s)	112, 341
ApoI	RAATTY	2 cut(s)	102, 840
AseI	ATTAAT	1 cut(s)	666
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	2 cut(s)	9, 367
AspS9I	GGNCC	3 cut(s)	215, 796, 866
AsuHPI	GGTGA	2 cut(s)	222, 865
AvaII	GGWCC	2 cut(s)	215, 796
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	2 cut(s)	466, 529
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	124, 328
BccI	CCATC	3 cut(s)	67, 131, 743
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	618, 652
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	113, 342
BlsI	GCNGC	2 cut(s)	114, 343
Bme18I	GGWCC	2 cut(s)	215, 796
BmgT120I	GGNCC	3 cut(s)	215, 796, 866
BmiI	GGNNCC	3 cut(s)	217, 366, 798
BmsI	GCATC	2 cut(s)	274, 626
BpiI	GAAGAC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	707
BsaAI	YACGTR	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	116, 368
BsaWI	WCCGGW	1 cut(s)	916
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	709, 734
Bse3DI	GCAATG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	116, 368
BseGI	GGATG	3 cut(s)	265, 699, 879
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	709, 734
BseRI	GAGGAG	1 cut(s)	807
BseXI	GCAGC	2 cut(s)	124, 328
BshFI	GGCC	2 cut(s)	681, 868
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	2 cut(s)	173, 201
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	173, 201
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	681, 868
Bsp1286I	GDGCHC	2 cut(s)	466, 529
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	5 cut(s)	130, 322, 449, 691, 989
BspANI	GGCC	2 cut(s)	681, 868
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	3 cut(s)	217, 366, 798
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	529
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	2 cut(s)	709, 734
BssECI	CCNNGG	2 cut(s)	116, 368
BssMI	GATC	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	116, 368
Bst4CI	ACNGT	2 cut(s)	228, 736
Bst6I	CTCTTC	3 cut(s)	240, 603, 825
BstACI	GRCGYC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	781
BstBAI	YACGTR	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	48, 1008
BstF5I	GGATG	3 cut(s)	265, 699, 879
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	2 cut(s)	9, 367
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 429
BstNSI	RCATGY	2 cut(s)	436, 455
BstSFI	CTRYAG	1 cut(s)	861
BstSNI	TACGTA	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	124, 328
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	681, 868
BtsCI	GGATG	3 cut(s)	265, 699, 879
BtsIMutI	CAGTG	1 cut(s)	784
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	2 cut(s)	9, 367
Cfr13I	GGNCC	3 cut(s)	215, 796, 866
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	6 cut(s)	433, 452, 552, 577, 742, 896
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	2 cut(s)	48, 1008
DinI	GGCGCC	1 cut(s)	366
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	295
Eam1104I	CTCTTC	3 cut(s)	240, 603, 825
EarI	CTCTTC	3 cut(s)	240, 603, 825
EciI	GGCGGA	1 cut(s)	119
Eco105I	TACGTA	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	116, 368
Eco24I	GRGCYC	2 cut(s)	466, 529
Eco47I	GGWCC	2 cut(s)	215, 796
Eco57I	CTGAAG	2 cut(s)	264, 855
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	116, 368
EcoT38I	GRGCYC	2 cut(s)	466, 529
EgeI	GGCGCC	1 cut(s)	366
EheI	GGCGCC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	116, 368
FaeI	CATG	6 cut(s)	436, 455, 555, 580, 745, 899
FaqI	GGGAC	2 cut(s)	173, 201
FatI	CATG	6 cut(s)	432, 451, 551, 576, 741, 895
FauI	CCCGC	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	113, 342
FokI	GGATG	3 cut(s)	252, 706, 866
FriOI	GRGCYC	2 cut(s)	466, 529
Fsp4HI	GCNGC	2 cut(s)	113, 342
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	2 cut(s)	8, 366
GluI	GCNGC	2 cut(s)	113, 342
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	681, 868
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	9, 367
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	6 cut(s)	436, 455, 555, 580, 745, 899
Hin6I	GCGC	2 cut(s)	7, 365
HinP1I	GCGC	2 cut(s)	7, 365
HindIII	AAGCTT	3 cut(s)	41, 123, 955
HinfI	GANTC	3 cut(s)	302, 548, 774
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	2 cut(s)	222, 865
Hpy166II	GTNNAC	5 cut(s)	34, 517, 739, 782, 796
Hpy188I	TCNGA	5 cut(s)	68, 79, 157, 244, 825
Hpy8I	GTNNAC	5 cut(s)	34, 517, 739, 782, 796
HpyAV	CCTTC	2 cut(s)	12, 389
HpyCH4III	ACNGT	2 cut(s)	228, 736
HpyCH4IV	ACGT	2 cut(s)	383, 971
HpyCH4V	TGCA	5 cut(s)	112, 179, 265, 534, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 429
HpyF3I	CTNAG	2 cut(s)	48, 1008
HpySE526I	ACGT	2 cut(s)	383, 971
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	6 cut(s)	436, 455, 555, 580, 745, 899
HspAI	GCGC	2 cut(s)	7, 365
KasI	GGCGCC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	124, 328
LweI	GCATC	2 cut(s)	274, 626
MaeI	CTAG	1 cut(s)	890
MaeII	ACGT	2 cut(s)	383, 971
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	90
MbiI	CCGCTC	1 cut(s)	691
MboI	GATC	1 cut(s)	88
MboII	GAAGA	9 cut(s)	215, 257, 268, 620, 812, 848, 896, 932, 968
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	466, 529
MluCI	AATT	6 cut(s)	102, 234, 270, 563, 840, 998
Mly113I	GGCGCC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	848
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	4 cut(s)	308, 479, 666, 930
MspI	CCGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	341, 429
NarI	GGCGCC	1 cut(s)	365
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	6 cut(s)	436, 455, 555, 580, 745, 899
NlaIV	GGNNCC	3 cut(s)	217, 366, 798
NmuCI	GTSAC	1 cut(s)	228
NspI	RCATGY	2 cut(s)	436, 455
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	3 cut(s)	302, 548, 774
PkrI	GCNGC	2 cut(s)	114, 343
PluTI	GGCGCC	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	217, 366, 798
PspPI	GGNCC	3 cut(s)	215, 796, 866
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	865
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
SaqAI	TTAA	4 cut(s)	308, 479, 666, 930
SatI	GCNGC	2 cut(s)	113, 342
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	215, 796, 866
SduI	GDGCHC	2 cut(s)	466, 529
SfaNI	GCATC	2 cut(s)	274, 626
SfcI	CTRYAG	1 cut(s)	861
SfoI	GGCGCC	1 cut(s)	366
SinI	GGWCC	2 cut(s)	215, 796
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SnaBI	TACGTA	1 cut(s)	384
Sse9I	AATT	6 cut(s)	102, 234, 270, 563, 840, 998
SsiI	CCGC	5 cut(s)	130, 322, 449, 691, 989
SspDI	GGCGCC	1 cut(s)	364
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	890
StyI	CCWWGG	2 cut(s)	116, 368
TaaI	ACNGT	2 cut(s)	228, 736
TaiI	ACGT	2 cut(s)	386, 974
TaqI	TCGA	1 cut(s)	711
TasI	AATT	6 cut(s)	102, 234, 270, 563, 840, 998
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	3 cut(s)	302, 548, 774
Tru1I	TTAA	4 cut(s)	308, 479, 666, 930
Tru9I	TTAA	4 cut(s)	308, 479, 666, 930
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	112, 341
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	540, 710
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	1 cut(s)	784
VpaK11BI	GGWCC	2 cut(s)	215, 796
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	2 cut(s)	102, 840
XceI	RCATGY	2 cut(s)	436, 455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.