AT3G15110

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007406
Physical Location & Seq
Reverse (-)
5084278 .. 5085942
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15110.1

Sequence Viewer

Length: 801 bp
ATGTTAGTGTTGCAGAGCCACCAATGTCTCTTCTCTCTCCCTTACCGTCTCCGTCCAACGCGTCTTATCTCTCCAATCCATTCGCTCTCTTCCTTTACCAGGATCCGTCCCGGTATAATCCGATTATCCGCCGTAAAAGAAATCGCCGATGTGGCGGAGGTGGAAGAAGATGGTCCAATTGAGCTTCCTACGTCGTCCACGTCTCCGTTTTCGTCTACTAACTCCATTTTCGCCACTTCCGATGATCCTACTCCTCTCCAATTGGCCACCAGTGTGCTTCTTACCGGTGCCATCACTGTCTTCCTCATCCGCTCCGTTCGACGGCGCGCTAAACGCGCCAAAGAGCTGACATTTAGATCTACTGGAGCTAAGAAATCGTTGAAAGAAGAAGCAATGGATAATCTAAAAGCGTTAAGTTCAACTCCGATAGAAGGTGGTAATTCAACTCCATCGGCGGCTCAGGCGTTTCTTGGTGCGATAGCCGCAGGAGTCATTGCTCTCATTCTTTACAAATTCACTGTTACAGTTGAATCAGGACTCAATCGTCAGACTATCTCTGATAACTTCTCGGTTAGGCAAATCACGGTAACCGTAAGGACTATCATCAACGGTATATGCTATCTAGCAACATTTGTTTTCGGTCTCAACGCGTTCGGACTTCTCCTTTACTCTGGTCAATTAGCCTTCAATGAAGATTCTGCTGAAGAAAACATGAAGGCCACAACACAACCTGGAGACTCATCATCAGGTGACAACAGTGAAGTAAATAAAAGCAATGAGGATCAAAGTTCAGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

266

Amino Acids

28.61

Weight (kDa)

6.19

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 151 - 227 7e-26 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 215
AccII CGCG 4 cut(s) 61, 327, 336, 650
AciI CCGC 5 cut(s) 129, 155, 310, 455, 483
AclWI GGATC 4 cut(s) 97, 110, 239, 789
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 723
AfiI CCNNNNNNNGG 3 cut(s) 99, 321, 431
AflIII ACRYGT 2 cut(s) 59, 648
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 5 cut(s) 382, 420, 444, 530, 688
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 2 cut(s) 98, 730
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 3 cut(s) 184, 346, 368
AluI AGCT 3 cut(s) 184, 346, 368
Alw26I GTCTC 5 cut(s) 32, 53, 207, 647, 729
AlwI GGATC 4 cut(s) 97, 110, 239, 789
AoxI GGCC 2 cut(s) 264, 717
ApoI RAATTY 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 284
AspLEI GCGC 3 cut(s) 327, 329, 338
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 761
AvaII GGWCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 292
BccI CCATC 3 cut(s) 164, 299, 457
BceAI ACGGC 2 cut(s) 116, 338
BciT130I CCWGG 2 cut(s) 100, 732
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 5 cut(s) 32, 53, 207, 647, 729
BfaI CTAG 1 cut(s) 623
BglI GCCNNNNNGGC 1 cut(s) 152
BglII AGATCT 1 cut(s) 356
BisI GCNGC 2 cut(s) 456, 483
BlsI GCNGC 2 cut(s) 457, 484
Bme1390I CCNGG 3 cut(s) 100, 111, 732
Bme18I GGWCC 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 104, 289
BmrFI CCNGG 3 cut(s) 100, 111, 732
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 2 cut(s) 384, 753
Bpu10I CCTNAGC 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 647
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 321, 431
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 270, 367
Bse3DI GCAATG 3 cut(s) 399, 492, 781
BseBI CCWGG 2 cut(s) 100, 732
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 99, 321, 431
BseMI GCAATG 3 cut(s) 399, 492, 781
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 2 cut(s) 270, 367
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 243
Bsh1236I CGCG 4 cut(s) 61, 327, 336, 650
BshFI GGCC 2 cut(s) 266, 719
BshNI GGYRCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 284
BsiSI CCGG 2 cut(s) 111, 285
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 99, 321, 431
BsmAI GTCTC 5 cut(s) 32, 53, 207, 647, 729
BsmBI CGTCTC 2 cut(s) 53, 207
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 2 cut(s) 266, 719
Bso31I GGTCTC 1 cut(s) 647
Bsp143I GATC 4 cut(s) 102, 244, 356, 781
BspACI CCGC 5 cut(s) 129, 155, 310, 455, 483
BspANI GGCC 2 cut(s) 266, 719
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 4 cut(s) 61, 327, 336, 650
BspLI GGNNCC 2 cut(s) 104, 289
BspPI GGATC 4 cut(s) 97, 110, 239, 789
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 312
BsrDI GCAATG 3 cut(s) 399, 492, 781
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 270, 367
BssAI RCCGGY 1 cut(s) 284
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 4 cut(s) 102, 244, 356, 781
Bst2UI CCWGG 2 cut(s) 100, 732
Bst4CI ACNGT 8 cut(s) 47, 298, 520, 526, 586, 592, 611, 758
Bst6I CTCTTC 2 cut(s) 35, 94
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 369, 459
BstEII GGTNACC 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 4 cut(s) 61, 327, 336, 650
BstHHI GCGC 3 cut(s) 327, 329, 338
BstKTI GATC 4 cut(s) 105, 247, 359, 784
BstMAI GTCTC 5 cut(s) 32, 53, 207, 647, 729
BstMBI GATC 4 cut(s) 102, 244, 356, 781
BstMWI GCNNNNNNNGC 5 cut(s) 152, 333, 335, 461, 482
BstNI CCWGG 2 cut(s) 100, 732
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 98, 109, 730
BstUI CGCG 4 cut(s) 61, 327, 336, 650
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 102, 356
BstYI RGATCY 2 cut(s) 102, 356
BsuRI GGCC 2 cut(s) 266, 719
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 4 cut(s) 277, 294, 516, 763
Cac8I GCNNGC 1 cut(s) 327
CfoI GCGC 3 cut(s) 327, 329, 338
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 1 cut(s) 712
CviJI RGCY 9 cut(s) 18, 184, 266, 346, 368, 458, 482, 683, 719
CviKI_1 RGCY 9 cut(s) 18, 184, 266, 346, 368, 458, 482, 683, 719
DdeI CTNAG 2 cut(s) 369, 459
DpnI GATC 4 cut(s) 104, 246, 358, 783
DpnII GATC 4 cut(s) 102, 244, 356, 781
DrdI GACNNNNNNGTC 1 cut(s) 543
DseDI GACNNNNNNGTC 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 35, 94
EarI CTCTTC 2 cut(s) 35, 94
EciI GGCGGA 2 cut(s) 118, 170
Eco31I GGTCTC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 723
Eco91I GGTNACC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 98, 730
Esp3I CGTCTC 2 cut(s) 53, 207
FaeI CATG 1 cut(s) 715
FaiI YATR 4 cut(s) 116, 614, 616, 713
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 711
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 456, 483
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 456, 483
FspBI CTAG 1 cut(s) 623
GlaI GCGC 3 cut(s) 326, 328, 337
GluI GCNGC 2 cut(s) 456, 483
GsuI CTGGAG 2 cut(s) 384, 753
HaeIII GGCC 2 cut(s) 266, 719
HapII CCGG 2 cut(s) 111, 285
HgaI GACGC 1 cut(s) 50
HhaI GCGC 3 cut(s) 327, 329, 338
Hin1II CATG 1 cut(s) 715
Hin6I GCGC 3 cut(s) 325, 327, 336
HinP1I GCGC 3 cut(s) 325, 327, 336
HinfI GANTC 5 cut(s) 489, 530, 537, 695, 737
HpaII CCGG 2 cut(s) 111, 285
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 2 cut(s) 198, 216
Hpy188I TCNGA 6 cut(s) 122, 241, 426, 549, 559, 656
Hpy188III TCNNGA 1 cut(s) 534
Hpy8I GTNNAC 2 cut(s) 198, 216
Hpy99I CGWCG 2 cut(s) 196, 324
HpyAV CCTTC 3 cut(s) 425, 694, 709
HpyCH4III ACNGT 8 cut(s) 47, 298, 520, 526, 586, 592, 611, 758
HpyCH4IV ACGT 2 cut(s) 191, 200
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 333, 335, 461, 482
HpyF3I CTNAG 2 cut(s) 369, 459
HpySE526I ACGT 2 cut(s) 191, 200
Hsp92II CATG 1 cut(s) 715
HspAI GCGC 3 cut(s) 325, 327, 336
Kzo9I GATC 4 cut(s) 102, 244, 356, 781
LmnI GCTCC 2 cut(s) 317, 365
MaeI CTAG 1 cut(s) 623
MaeII ACGT 2 cut(s) 191, 200
MaeIII GTNAC 3 cut(s) 520, 586, 749
MalI GATC 4 cut(s) 104, 246, 358, 783
MbiI CCGCTC 1 cut(s) 312
MboI GATC 4 cut(s) 102, 244, 356, 781
MboII GAAGA 8 cut(s) 22, 81, 176, 179, 292, 398, 704, 716
MfeI CAATTG 2 cut(s) 177, 260
MflI RGATCY 2 cut(s) 102, 356
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 5 cut(s) 177, 260, 439, 512, 677
MluI ACGCGT 2 cut(s) 59, 648
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 3 cut(s) 498, 531, 731
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 4 cut(s) 151, 264, 314, 772
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 2 cut(s) 111, 285
MspR9I CCNGG 3 cut(s) 100, 111, 732
MunI CAATTG 2 cut(s) 177, 260
MvaI CCWGG 2 cut(s) 100, 732
MvnI CGCG 4 cut(s) 61, 327, 336, 650
MwoI GCNNNNNNNGC 5 cut(s) 152, 333, 335, 461, 482
NciI CCSGG 1 cut(s) 111
NdeII GATC 4 cut(s) 102, 244, 356, 781
NlaIII CATG 1 cut(s) 715
NlaIV GGNNCC 2 cut(s) 104, 289
NmuCI GTSAC 1 cut(s) 749
OliI CACNNNNGTG 1 cut(s) 272
PauI GCGCGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 197, 237
PfeI GAWTC 2 cut(s) 530, 695
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 2 cut(s) 457, 484
PleI GAGTC 3 cut(s) 497, 531, 731
PpsI GAGTC 3 cut(s) 497, 531, 731
Psp6I CCWGG 2 cut(s) 98, 730
PspEI GGTNACC 1 cut(s) 586
PspGI CCWGG 2 cut(s) 98, 730
PspN4I GGNNCC 2 cut(s) 104, 289
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 102, 356
PteI GCGCGC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 2 cut(s) 456, 483
Sau3AI GATC 4 cut(s) 102, 244, 356, 781
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 3 cut(s) 498, 531, 731
ScrFI CCNGG 3 cut(s) 100, 111, 732
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 5 cut(s) 177, 260, 439, 512, 677
SsiI CCGC 5 cut(s) 129, 155, 310, 455, 483
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 3 cut(s) 98, 109, 730
TaaI ACNGT 8 cut(s) 47, 298, 520, 526, 586, 592, 611, 758
TaiI ACGT 2 cut(s) 194, 203
TaqI TCGA 1 cut(s) 319
TaqII GACCGA 1 cut(s) 629
TasI AATT 5 cut(s) 177, 260, 439, 512, 677
TauI GCSGC 2 cut(s) 458, 485
TfiI GAWTC 2 cut(s) 530, 695
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 4 cut(s) 277, 301, 523, 763
TseFI GTSAC 1 cut(s) 749
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 2 cut(s) 705, 728
TspGWI ACGGA 4 cut(s) 41, 95, 195, 304
TspRI CASTG 4 cut(s) 277, 301, 523, 763
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 97
XapI RAATTY 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.