Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8297163.1

Orthogroup ID

OG0007406

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 773

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8297163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

aaatttaggtctaatggagcgaagaagtcgttgaaggaggaggctttggatagcttgaaagtgatggcttcagggtccattgaatcaaagacaccttcacctgttcaggcattgttgggtggaatatctgccggagtcattgcacttattctttacaagttcactactacaattgaggcatctctcaaccgccaaacgatttcagataatttttcagttcgtcagattacaataacaataaggaccattataaatgggttgtgctaccttgcaacatttgtttttggcatcaacgctgttggtttagttctttatgctggccagattttcatcaacgacgagtttaaaagtaaagaaactgagaatcaaagtaacgaccagtcaggctcaccgacttcaatggtcgagagtcccacagatagtgctgtggacagtagcaagggggatcaaagttcagatgagccacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3082

Protein Analysis

156

Amino Acids

16.69

Weight (kDa)

4.97

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15110
fragaria_vesca	FvH4_3g19170 FvH4_3g19170 FvH4_3g19170
malus_domestica	MD03G1235600.v1.1 MD11G1256600.v1.1
prunus_persica	Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1 Prupe.4G173400_v2.0.a1
pyrus_communis	pycom03g18210 pycom11g22680
rosa_chinensis	RchiOBHm_Chr5g0032261
rosa_laevigata	RLG00000033375
rosa_multiflora	Rmu_co8297163.1_g000001 Rmu_sc0018683.1_g000002 Rmu_sc0038270.1_g000002 Rmu_sc0038270.1_g000005 Rmu_sc0042408.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048200
rosa_rugosa	Rorug05G0130100
rosa_samantha	Rh5AG223900 Rh5BG224600 Rh5CG250100 Rh5DG229300
rosa_wichuraiana	Rw5G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	2
AcuI	CTGAAG	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	34, 58, 83, 399
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
AlwI	GGATC	1 cut(s)	453
AoxI	GGCC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	2
AspS9I	GGNCC	2 cut(s)	75, 243
AsuHPI	GGTGA	2 cut(s)	90, 381
AvaII	GGWCC	2 cut(s)	75, 243
BalI	TGGCCA	1 cut(s)	321
BccI	CCATC	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	75, 243
BmgT120I	GGNCC	2 cut(s)	75, 243
BmiI	GGNNCC	1 cut(s)	76
BmsI	GCATC	2 cut(s)	188, 297
BsaBI	GATNNNNATC	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	138
Bse8I	GATNNNNATC	1 cut(s)	329
BseJI	GATNNNNATC	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	360
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	75, 243
CviJI	RGCY	6 cut(s)	44, 54, 68, 321, 387, 463
CviKI_1	RGCY	6 cut(s)	44, 54, 68, 321, 387, 463
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	75, 243
Eco57I	CTGAAG	1 cut(s)	54
FaiI	YATR	2 cut(s)	251, 315
FaqI	GGGAC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	132
HinfI	GANTC	4 cut(s)	83, 135, 364, 409
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	90, 381
Hpy166II	GTNNAC	2 cut(s)	162, 430
Hpy188I	TCNGA	3 cut(s)	205, 225, 457
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	2 cut(s)	162, 430
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	28, 105
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	143, 272
HpyF3I	CTNAG	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	8 cut(s)	57, 92, 114, 145, 303, 335, 369, 392
LweI	GCATC	2 cut(s)	188, 297
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	1 cut(s)	34
MfeI	CAATTG	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	3 cut(s)	2, 171, 208
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	144, 418
MnlI	CCTC	3 cut(s)	31, 34, 169
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	171
NdeII	GATC	1 cut(s)	445
NlaIV	GGNNCC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	83, 364
PleI	GAGTC	2 cut(s)	143, 417
PpsI	GAGTC	2 cut(s)	143, 417
PsiI	TTATAA	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	75, 243
SaqAI	TTAA	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	2 cut(s)	75, 243
SchI	GAGTC	2 cut(s)	144, 418
SetI	ASST	5 cut(s)	11, 56, 97, 103, 270
SfaNI	GCATC	2 cut(s)	188, 297
SinI	GGWCC	2 cut(s)	75, 243
Sse9I	AATT	3 cut(s)	2, 171, 208
SsiI	CCGC	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	2, 171, 208
TfiI	GAWTC	2 cut(s)	83, 364
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	75, 243
XapI	RAATTY	1 cut(s)	2

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.