Rorug05G0130100

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007406
Physical Location & Seq
Forward (+)
11579432 .. 11579611
180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0130100.1

Sequence Viewer

Length: 180 bp
ATGGCCATCGACGGCGCCGACGAGGTAGACCCCAATCTGGATTTGGTCAAGGGCCGCGGCGGCGCGTTGTTAAAGGAAAAGATGGTGGAGGCCGCATCGGAGAAGTTCGTGGTGGTCGCCGACGAGACGAAACTGGTGACGGGGCTGGGAGGAAGCGGGCTGGCAATGGGTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

59

Amino Acids

5.96

Weight (kDa)

4.46

Isoelectric Point (pI)

7.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rib_5-P_isom_A PF06026 1 - 52 8e-21 Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 27
AccII CGCG 2 cut(s) 57, 65
AciI CCGC 5 cut(s) 55, 57, 60, 93, 156
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 3 cut(s) 3, 52, 90
AspLEI GCGC 2 cut(s) 17, 65
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 148
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 14
BccI CCATC 2 cut(s) 14, 76
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 119
BfoI RGCGCY 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 4 cut(s) 55, 58, 61, 93
BlsI GCNGC 4 cut(s) 56, 59, 62, 94
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 145
Bsh1236I CGCG 2 cut(s) 57, 65
BshFI GGCC 3 cut(s) 5, 54, 92
BshNI GGYRCC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsnI GGCC 3 cut(s) 5, 54, 92
BspACI CCGC 5 cut(s) 55, 57, 60, 93, 156
BspANI GGCC 3 cut(s) 5, 54, 92
BspFNI CGCG 2 cut(s) 57, 65
BspLI GGNNCC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 158, 162
BstDSI CCRYGG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 57, 65
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 65
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstUI CGCG 2 cut(s) 57, 65
BsuRI GGCC 3 cut(s) 5, 54, 92
BtgI CCRYGG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 158, 162
CfoI GCGC 2 cut(s) 17, 65
Cfr13I GGNCC 1 cut(s) 52
Cfr42I CCGCGG 1 cut(s) 58
CviJI RGCY 5 cut(s) 5, 54, 92, 145, 160
CviKI_1 RGCY 5 cut(s) 5, 54, 92, 145, 160
DinI GGCGCC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 3
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 119
FauI CCCGC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 55, 58, 61, 93
Fsp4HI GCNGC 4 cut(s) 55, 58, 61, 93
GlaI GCGC 2 cut(s) 16, 64
GluI GCNGC 4 cut(s) 55, 58, 61, 93
GsaI CCCAGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 5, 54, 92
HhaI GCGC 2 cut(s) 17, 65
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 2 cut(s) 15, 63
HinP1I GCGC 2 cut(s) 15, 63
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 38, 177
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 14, 23, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 2 cut(s) 15, 63
KasI GGCGCC 1 cut(s) 14
KspI CCGCGG 1 cut(s) 58
LpnPI CCDG 4 cut(s) 23, 119, 131, 146
LweI GCATC 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 15
MnlI CCTC 3 cut(s) 16, 82, 143
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 57
MvnI CGCG 2 cut(s) 57, 65
MwoI GCNNNNNNNGC 1 cut(s) 60
NarI GGCGCC 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 18
PkrI GCNGC 4 cut(s) 56, 59, 62, 94
PluTI GGCGCC 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 52
SacII CCGCGG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 4 cut(s) 55, 58, 61, 93
Sau96I GGNCC 1 cut(s) 52
SetI ASST 1 cut(s) 27
SfaNI GCATC 1 cut(s) 104
SfoI GGCGCC 1 cut(s) 16
Sfr303I CCGCGG 1 cut(s) 58
SgrBI CCGCGG 1 cut(s) 58
SsiI CCGC 5 cut(s) 55, 57, 60, 93, 156
SspDI GGCGCC 1 cut(s) 14
TaqI TCGA 1 cut(s) 9
TauI GCSGC 4 cut(s) 57, 60, 63, 95
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.