Rh5DG229300

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007406
Physical Location & Seq
Reverse (-)
26022765 .. 26025998
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG229300.1

Sequence Viewer

Length: 657 bp
ATGTTGCAGACCCAACACCTCCTCCGTTCCAATCTCCCCATCTCTCTCTCTCCTCCCCAAACCCACTTTCTCTTTCCTCCCAATCTCTCCTCCTCACCTCTCCATTTTCTCCACAAACCCATCAACCACATCTCCCTCTCAGCGCACTCTACTCCCAGACCGGACCAATGGCTCGCCGAAGTTCCAGAACCTTCCGCCGGAACCGGCACCTATACGATTCCAGACGAAGAGGGTCCCATTGAGATTTTGGATTCTGATTCTCCAGTGTTTGCTACCAGTGATGACCCTTCTTTTATCCAAACTGCCACCAGTGTTCTCCTCACTGGAACCATCACTGTTTTCCTCTTTCGCTCGCTACGACGTCGTGCGAGGCGTGCAAAAGAGCTGAAATTTAGGTCTAATGGAGCGAAGAAGTCGTTGAAGGAGGAGGCTTTGGATAGCTTGAAAGTGATGGCTTCAGGGTCCATTGAATCAAAGACACCTTCACCTGTTCAGGCATTGTTGGGTGGAATATCTGCCGGAGTCATTGCACTTATTCTTTACAAGTTCACTACTACAATTGAGGCATCTCTCAACCGCCAAACGATTTCAGATAATTTTTCAGTATGTTCCTTGATATCTGATGCCGCTTTTAGCAGTTTTTCTCATTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

218

Amino Acids

23.73

Weight (kDa)

7.07

Isoelectric Point (pI)

61.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 161 - 203 2.9e-08 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 3 cut(s) 195, 577, 627
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 421, 445, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 385, 441
AluI AGCT 2 cut(s) 385, 441
ApoI RAATTY 1 cut(s) 389
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 163, 233, 462
AsuHPI GGTGA 2 cut(s) 87, 477
AvaII GGWCC 3 cut(s) 163, 233, 462
BanI GGYRCC 1 cut(s) 206
BccI CCATC 4 cut(s) 47, 128, 338, 445
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme18I GGWCC 3 cut(s) 163, 233, 462
BmgT120I GGNCC 3 cut(s) 163, 233, 462
BmiI GGNNCC 6 cut(s) 202, 208, 234, 235, 328, 463
BmsI GCATC 2 cut(s) 575, 613
BpmI CTGGAG 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 4 cut(s) 263, 276, 309, 328
Bse3DI GCAATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 4 cut(s) 263, 276, 309, 328
BseRI GAGGAG 6 cut(s) 11, 42, 79, 82, 308, 440
BshNI GGYRCC 1 cut(s) 206
BsiSI CCGG 4 cut(s) 161, 198, 204, 519
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 219
BspACI CCGC 3 cut(s) 195, 577, 627
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 6 cut(s) 202, 208, 234, 235, 328, 463
BspT107I GGYRCC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 4 cut(s) 263, 276, 309, 328
BssAI RCCGGY 1 cut(s) 203
BssNI GRCGYC 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 174, 353, 375
BstDEI CTNAG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 374
BtsIMutI CAGTG 5 cut(s) 270, 283, 316, 321, 333
Cac8I GCNNGC 3 cut(s) 174, 353, 375
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 163, 233, 462
CviJI RGCY 5 cut(s) 172, 385, 431, 441, 455
CviKI_1 RGCY 5 cut(s) 172, 385, 431, 441, 455
DdeI CTNAG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
EciI GGCGGA 1 cut(s) 184
Eco32I GATATC 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 163, 233, 462
Eco57I CTGAAG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 233
EcoRV GATATC 1 cut(s) 618
FaiI YATR 2 cut(s) 213, 607
FaqI GGGAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 627
Fsp4HI GCNGC 1 cut(s) 627
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 246
HapII CCGG 4 cut(s) 161, 198, 204, 519
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 361
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 5 cut(s) 217, 251, 257, 470, 522
HpaII CCGG 4 cut(s) 161, 198, 204, 519
HphI GGTGA 2 cut(s) 87, 477
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 3 cut(s) 256, 592, 622
Hpy188III TCNNGA 2 cut(s) 185, 221
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 2 cut(s) 363, 366
HpyAV CCTTC 4 cut(s) 201, 297, 415, 492
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 3 cut(s) 7, 377, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 361
Hsp92I GRCGYC 1 cut(s) 361
HspAI GCGC 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 404
LweI GCATC 2 cut(s) 575, 613
MaeII ACGT 1 cut(s) 361
MboII GAAGA 2 cut(s) 239, 421
MfeI CAATTG 1 cut(s) 558
MluCI AATT 3 cut(s) 389, 558, 595
MlyI GAGTC 1 cut(s) 531
MspI CCGG 4 cut(s) 161, 198, 204, 519
MunI CAATTG 1 cut(s) 558
MwoI GCNNNNNNNGC 1 cut(s) 374
NlaIV GGNNCC 6 cut(s) 202, 208, 234, 235, 328, 463
PcsI WCGNNNNNNNCGW 2 cut(s) 355, 370
PfeI GAWTC 4 cut(s) 217, 251, 257, 470
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
PspN4I GGNNCC 6 cut(s) 202, 208, 234, 235, 328, 463
PspPI GGNCC 3 cut(s) 163, 233, 462
PspPPI RGGWCCY 1 cut(s) 233
SatI GCNGC 1 cut(s) 627
Sau96I GGNCC 3 cut(s) 163, 233, 462
SchI GAGTC 1 cut(s) 531
SfaNI GCATC 2 cut(s) 575, 613
SinI GGWCC 3 cut(s) 163, 233, 462
Sse9I AATT 3 cut(s) 389, 558, 595
SsiI CCGC 3 cut(s) 195, 577, 627
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 364
TasI AATT 3 cut(s) 389, 558, 595
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 4 cut(s) 217, 251, 257, 470
TscAI CASTG 5 cut(s) 270, 283, 316, 328, 340
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 5 cut(s) 270, 283, 316, 328, 340
VpaK11BI GGWCC 3 cut(s) 163, 233, 462
XapI RAATTY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
ZraI GACGTC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.