FvH4_3g19170

Protein of unknown function (DUF3082)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007406
Physical Location & Seq
Reverse (-)
12353834 .. 12356899
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19170.t3

Sequence Viewer

Length: 867 bp
ATGTTGCAGACCCAACACCTCCTCCTCCGTTCCACTCTCCCCATCTCCCTCTCTCCTCCTCAAACCCACTTTCTCTTTCCTCCCAATCTCTCCTCCTCACCTCTCAACTTTCTCCACAAACCCATTAACCACACCTTCCTCTCAGCCCACTCCACTCCCAGACCGGACCAATGGCTTGCCGAAGCTCCAGAACCTCCCACCGGAACCGGAACTTATACAGTTCCAGACGAAGAGGGCCCCATTGAGATTTTGGATACTGATTCTCCCATATTTGCTACCAATGATGACCCTTCTTTTATCCAAACCGCCACCAGTGTTCTCCTCACTGGAGCCATCACTGTTTTTCTCTTCAGGTCGATACGACGTCGTGCCAAGCGTGCTAAGGAGTTGAAATTTAGGTCTACTGGAGCAACCCAAAAAAAGTCATTGAAGGAAGAGGCTTTGGATAGCTTGAAAGTGATGGCTTCAGGGTCCATTGAATCAAAGACACCTTCACCTGTTCAGGCATTGTTGGGTGGAATATCAGCCGGAGTCATTGCACTTATTCTTTACAAGTTCACTACCACGATTGAGGCATCTCTCAACCGCCAAACGATTTCAGATAATTTTTCGGTTCGTCAGATTACAATCACAATAAGGACCATTATCAATGGGTTGTGCTACCTTGCAACATTTGTTTTTGGCATCAATGCTGTTGGTTTAGTTCTTTATGCTGGCCAGATTTTCATCAATGACGAATTTAAAAGTGAAGGAACTGAGAAGCAGAGTAACAAACAGTCAGGCTCACCGACTTCAATGGTTGAGAGTCCCACAGATACTGCTGTGGACAATAACAAGGGGGATGAAAGTTCAGATGAGCCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3082

Protein Analysis

289

Amino Acids

31.35

Weight (kDa)

5.77

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3082 PF11282 164 - 213 3.8e-11 Protein of unknown function (DUF3082)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 367
AccI GTMKAC 1 cut(s) 401
AciI CCGC 2 cut(s) 306, 586
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 2 cut(s) 392, 737
AcuI CTGAAG 2 cut(s) 334, 450
AcyI GRCGYC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 5 cut(s) 391, 430, 454, 479, 795
AluBI AGCT 2 cut(s) 185, 450
AluI AGCT 2 cut(s) 185, 450
AlwNI CAGNNNCTG 1 cut(s) 818
AoxI GGCC 2 cut(s) 235, 715
ApaI GGGCCC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 392, 737
AspS9I GGNCC 5 cut(s) 166, 235, 236, 471, 639
AsuHPI GGTGA 3 cut(s) 90, 486, 777
AvaII GGWCC 3 cut(s) 166, 471, 639
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BalI TGGCCA 1 cut(s) 717
BanII GRGCYC 1 cut(s) 239
BccI CCATC 3 cut(s) 50, 341, 454
BciVI GTATCC 1 cut(s) 247
BfuI GTATCC 1 cut(s) 247
Bme18I GGWCC 3 cut(s) 166, 471, 639
BmgT120I GGNCC 5 cut(s) 166, 235, 236, 471, 639
BmiI GGNNCC 5 cut(s) 205, 237, 238, 331, 472
BmsI GCATC 2 cut(s) 584, 693
BpmI CTGGAG 3 cut(s) 171, 348, 426
Bpu10I CCTNAGC 1 cut(s) 381
BsaBI GATNNNNATC 2 cut(s) 626, 725
BsaHI GRCGYC 1 cut(s) 364
BsaWI WCCGGW 3 cut(s) 163, 200, 206
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 247, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 3 cut(s) 312, 331, 409
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 2 cut(s) 626, 725
BseGI GGATG 1 cut(s) 847
BseJI GATNNNNATC 2 cut(s) 626, 725
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 156, 747
BseNI ACTGG 3 cut(s) 312, 331, 409
BseRI GAGGAG 7 cut(s) 11, 14, 45, 48, 82, 85, 311
BseSI GKGCMC 1 cut(s) 239
BshFI GGCC 2 cut(s) 237, 717
BsiSI CCGG 4 cut(s) 164, 201, 207, 528
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 792
BsnI GGCC 2 cut(s) 237, 717
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
BspACI CCGC 2 cut(s) 306, 586
BspANI GGCC 2 cut(s) 237, 717
BspCNI CTCAG 2 cut(s) 155, 748
BspLI GGNNCC 5 cut(s) 205, 237, 238, 331, 472
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 3 cut(s) 312, 331, 409
BssNI GRCGYC 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 220, 340, 777
Bst6I CTCTTC 3 cut(s) 225, 353, 429
BstACI GRCGYC 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 177, 378, 715
BstDEI CTNAG 3 cut(s) 142, 381, 756
BstF5I GGATG 1 cut(s) 847
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 2 cut(s) 237, 717
BtsCI GGATG 1 cut(s) 847
BtsIMutI CAGTG 3 cut(s) 319, 324, 336
Cac8I GCNNGC 3 cut(s) 177, 378, 715
CaiI CAGNNNCTG 1 cut(s) 818
Cfr13I GGNCC 5 cut(s) 166, 235, 236, 471, 639
DdeI CTNAG 3 cut(s) 142, 381, 756
DraI TTTAAA 1 cut(s) 742
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 3 cut(s) 225, 353, 429
EarI CTCTTC 3 cut(s) 225, 353, 429
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 3 cut(s) 166, 471, 639
Eco57I CTGAAG 2 cut(s) 334, 450
EcoO109I RGGNCCY 2 cut(s) 235, 236
EcoT38I GRGCYC 1 cut(s) 239
FaiI YATR 3 cut(s) 216, 269, 711
FaqI GGGAC 1 cut(s) 792
FblI GTMKAC 1 cut(s) 401
FokI GGATG 1 cut(s) 854
FriOI GRGCYC 1 cut(s) 239
GsuI CTGGAG 3 cut(s) 171, 348, 426
HaeIII GGCC 2 cut(s) 237, 717
HapII CCGG 4 cut(s) 164, 201, 207, 528
Hin1I GRCGYC 1 cut(s) 364
HinfI GANTC 4 cut(s) 260, 479, 531, 805
HpaII CCGG 4 cut(s) 164, 201, 207, 528
HphI GGTGA 3 cut(s) 90, 486, 777
Hpy166II GTNNAC 3 cut(s) 402, 558, 826
Hpy188I TCNGA 3 cut(s) 601, 621, 853
Hpy188III TCNNGA 2 cut(s) 188, 224
Hpy8I GTNNAC 3 cut(s) 402, 558, 826
Hpy99I CGWCG 2 cut(s) 366, 369
HpyAV CCTTC 5 cut(s) 145, 300, 424, 501, 743
HpyCH4III ACNGT 3 cut(s) 220, 340, 777
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 7, 539, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 142, 381, 756
HpySE526I ACGT 1 cut(s) 364
Hsp92I GRCGYC 1 cut(s) 364
LmnI GCTCC 3 cut(s) 190, 329, 407
LweI GCATC 2 cut(s) 584, 693
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 767
MboII GAAGA 3 cut(s) 242, 340, 446
MhlI GDGCHC 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 3 cut(s) 392, 604, 737
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 2 cut(s) 540, 814
Mox20I TGGCCA 1 cut(s) 717
MscI TGGCCA 1 cut(s) 717
MseI TTAA 2 cut(s) 126, 741
Msp20I TGGCCA 1 cut(s) 717
MspI CCGG 4 cut(s) 164, 201, 207, 528
MwoI GCNNNNNNNGC 1 cut(s) 377
NlaIV GGNNCC 5 cut(s) 205, 237, 238, 331, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PfeI GAWTC 2 cut(s) 260, 479
PleI GAGTC 2 cut(s) 539, 813
PpsI GAGTC 2 cut(s) 539, 813
PspN4I GGNNCC 5 cut(s) 205, 237, 238, 331, 472
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 5 cut(s) 166, 235, 236, 471, 639
PstNI CAGNNNCTG 1 cut(s) 818
SaqAI TTAA 2 cut(s) 126, 741
Sau96I GGNCC 5 cut(s) 166, 235, 236, 471, 639
SchI GAGTC 2 cut(s) 540, 814
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 584, 693
SinI GGWCC 3 cut(s) 166, 471, 639
Sse9I AATT 3 cut(s) 392, 604, 737
SsiI CCGC 2 cut(s) 306, 586
TaaI ACNGT 3 cut(s) 220, 340, 777
TaiI ACGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 356
TasI AATT 3 cut(s) 392, 604, 737
TfiI GAWTC 2 cut(s) 260, 479
Tru1I TTAA 2 cut(s) 126, 741
Tru9I TTAA 2 cut(s) 126, 741
TscAI CASTG 3 cut(s) 319, 331, 343
TspDTI ATGAA 2 cut(s) 715, 858
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 3 cut(s) 319, 331, 343
VpaK11BI GGWCC 3 cut(s) 166, 471, 639
XapI RAATTY 2 cut(s) 392, 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 401
ZraI GACGTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.